Critical assessment of methods of protein structure prediction (CASP)—Round XIV
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journal
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October 2021 |
Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction
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journal
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January 2011 |
Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10: CASP10 Target Highlights
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journal
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January 2014 |
Some of the most interesting CASP11 targets through the eyes of their authors: CASP11 Target Highlights
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journal
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November 2015 |
Target highlights from the first post‐PSI CASP experiment (CASP12, May–August 2016)
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journal
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October 2017 |
Target highlights in CASP13: Experimental target structures through the eyes of their authors
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journal
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August 2019 |
Computational models in the service of X‐ray and cryo‐ electron microscopy structure determination
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journal
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September 2021 |
Structure of a trimeric variant of the Epstein–Barr virus glycoprotein B
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journal
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February 2009 |
Crystal Structure of the Human Cytomegalovirus Glycoprotein B
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journal
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October 2015 |
Structure of HCMV glycoprotein B in the postfusion conformation bound to a neutralizing human antibody
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journal
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September 2015 |
Crystal Structure of Glycoprotein B from Herpes Simplex Virus 1
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journal
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July 2006 |
Crystal Structure of the Low-pH Form of the Vesicular Stomatitis Virus Glycoprotein G
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journal
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July 2006 |
Structure of the Prefusion Form of the Vesicular Stomatitis Virus Glycoprotein G
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journal
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February 2007 |
The postfusion structure of baculovirus gp64 supports a unified view of viral fusion machines
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journal
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September 2008 |
Common Expression of Varicella-Zoster Viral Glycoprotein Antigens in Vitro and in Chickenpox and Zoster Vesicles
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journal
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October 1983 |
Varicella zoster virus vasculopathies: diverse clinical manifestations, laboratory features, pathogenesis, and treatment
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journal
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August 2009 |
Varicella Zoster Virus Vasculopathy
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journal
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September 2018 |
Developments in Varicella Zoster Virus Vasculopathy
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journal
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January 2016 |
Capturing the Herpes Simplex Virus Core Fusion Complex (gB-gH/gL) in an Acidic Environment
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journal
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April 2011 |
Antigenic and Mutational Analyses of Herpes Simplex Virus Glycoprotein B Reveal Four Functional Regions
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journal
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January 2007 |
Human Monoclonal Antibodies Neutralizing Cytomegalovirus (CMV) for Prophylaxis of CMV Disease: Report of a Phase I Trial in Bone Marrow Transplant Recipients
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journal
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June 1991 |
B Cell Repertoire Analysis Identifies New Antigenic Domains on Glycoprotein B of Human Cytomegalovirus which Are Target of Neutralizing Antibodies
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journal
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August 2011 |
The gp116 of the gp58/116 complex of human cytomegalovirus represents the amino-terminal part of the precursor molecule and contains a neutralizing epitope
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journal
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October 1990 |
Structural Basis for the Recognition of Human Cytomegalovirus Glycoprotein B by a Neutralizing Human Antibody
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journal
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October 2014 |
Characterization of a Discontinuous Neutralizing Epitope on Glycoprotein B of Human Cytomegalovirus
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journal
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June 2013 |
Mechanism of Neutralization of Herpes Simplex Virus by Antibodies Directed at the Fusion Domain of Glycoprotein B
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journal
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December 2013 |
Two classes of protective antibodies against Pseudorabies virus variant glycoprotein B: Implications for vaccine design
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journal
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December 2017 |
A glycoprotein B-neutralizing antibody structure at 2.8 Å uncovers a critical domain for herpesvirus fusion initiation
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journal
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August 2020 |
The N-terminus of varicella-zoster virus glycoprotein B has a functional role in fusion
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journal
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January 2021 |
Contractile injection systems of bacteriophages and related systems: Conserved features of a contractile sheath-rigid tube mechanism
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journal
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February 2018 |
Insights into Bacteriophage T5 Structure from Analysis of Its Morphogenesis Genes and Protein Components
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journal
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November 2013 |
Structure, function and assembly of the long, flexible tail of siphophages
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journal
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December 2020 |
Crystal Structure of pb9, the Distal Tail Protein of Bacteriophage T5: a Conserved Structural Motif among All Siphophages
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journal
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October 2013 |
Bacteriophage T5 tail tube structure suggests a trigger mechanism for Siphoviridae DNA ejection
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journal
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December 2017 |
Structure of the cell-puncturing device of bacteriophage T4
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journal
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January 2002 |
Contact-Dependent Growth Inhibition in Bacteria: Do Not Get Too Close!
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journal
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October 2020 |
Contact-Dependent Inhibition of Growth in Escherichia coli
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journal
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August 2005 |
Toxin on a stick: Modular CDI toxin delivery systems play roles in bacterial competition
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journal
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July 2011 |
Contact-Dependent Growth Inhibition (CDI) and CdiB/CdiA Two-Partner Secretion Proteins
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journal
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November 2015 |
A comparative genomics approach identifies contact-dependent growth inhibition as a virulence determinant
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journal
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March 2020 |
Polymorphic Toxins and Their Immunity Proteins: Diversity, Evolution, and Mechanisms of Delivery
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journal
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September 2020 |
Interbacterial signaling via Burkholderia contact-dependent growth inhibition system proteins
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journal
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June 2016 |
B urkholderia BcpA mediates biofilm formation independently of interbacterial contact-dependent growth inhibition: CDI system protein-mediated biofilm
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journal
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August 2013 |
Contact‐dependent growth inhibition induces high levels of antibiotic‐tolerant persister cells in clonal bacterial populations
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journal
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March 2018 |
Pseudomonas aeruginosa Contact-Dependent Growth Inhibition Plays Dual Role in Host-Pathogen Interactions
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journal
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November 2017 |
Programmed Secretion Arrest and Receptor-Triggered Toxin Export during Antibacterial Contact-Dependent Growth Inhibition
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journal
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November 2018 |
Structural basis of toxicity and immunity in contact-dependent growth inhibition (CDI) systems
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journal
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December 2012 |
The CDI toxin of Yersinia kristensenii is a novel bacterial member of the RNase A superfamily
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journal
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April 2017 |
CdiA from Enterobacter cloacae Delivers a Toxic Ribosomal RNase into Target Bacteria
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journal
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May 2014 |
Functional plasticity of antibacterial EndoU toxins
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journal
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August 2018 |
Structure of a novel antibacterial toxin that exploits elongation factor Tu to cleave specific transfer RNAs
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journal
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August 2017 |
Convergent Evolution of the Barnase/EndoU/Colicin/RelE (BECR) Fold in Antibacterial tRNase Toxins
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journal
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November 2019 |
Contact-dependent growth inhibition toxins exploit multiple independent cell-entry pathways
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journal
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August 2015 |
Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics
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journal
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January 2012 |
Three Dimensional Structure of the MqsR:MqsA Complex: A Novel TA Pair Comprised of a Toxin Homologous to RelE and an Antitoxin with Unique Properties
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journal
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December 2009 |
Molecular Structure and Function of the Novel BrnT/BrnA Toxin-Antitoxin System of Brucella abortus
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journal
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February 2012 |
Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA–tRNA interaction
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journal
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November 2006 |
Structural inhibition of the colicin D tRNase by the tRNA-mimicking immunity protein
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journal
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March 2004 |
Protein Splicing: How Inteins Escape from Precursor Proteins
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journal
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April 2014 |
NMR structure of a non-conjugatable, ADP-ribosylation associated, ubiquitin-like domain from Tetrahymena thermophila polyubiquitin locus
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journal
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April 2019 |
New type of polyubiquitin-like genes with intein-like autoprocessing domains
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journal
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November 2004 |
Structural basis of ubiquitination mediated by protein splicing in early Eukarya
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journal
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May 2021 |
A functional interplay between intein and extein sequences in protein splicing compensates for the essential block B histidine
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journal
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January 2019 |
Crystal structure of GyrA intein from Mycobacterium xenopi reveals structural basis of protein splicing
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journal
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January 1998 |
Semisynthesis of a segmental isotopically labeled protein splicing precursor: NMR evidence for an unusual peptide bond at the N-extein-intein junction
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journal
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April 2004 |
Conditional DnaB Protein Splicing Is Reversibly Inhibited by Zinc in Mycobacteria
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journal
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August 2020 |
Zinc Inhibition of Protein trans-Splicing and Identification of Regions Essential for Splicing and Association of a Split Intein*
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journal
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June 2001 |
Zinc Ion Effects on Individual Ssp DnaE Intein Splicing Steps: Regulating Pathway Progression
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journal
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April 2003 |
BonA from Acinetobacter baumannii Forms a Divisome-Localized Decamer That Supports Outer Envelope Function
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journal
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August 2021 |
Role of Sigma E-Regulated Genes in Escherichia coli Uropathogenesis
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journal
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July 2006 |
Structure of dual BON-domain protein DolP identifies phospholipid binding as a new mechanism for protein localisation
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journal
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December 2020 |
YraP Contributes to Cell Envelope Integrity and Virulence of Salmonella enterica Serovar Typhimurium
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journal
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November 2018 |
Involvement of Neisseria meningitidis Lipoprotein GNA2091 in the Assembly of a Subset of Outer Membrane Proteins
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journal
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May 2014 |
NlpD links cell wall remodeling and outer membrane invagination during cytokinesis in Escherichia coli
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journal
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July 2017 |
The BON domain: a putative membrane-binding domain
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journal
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July 2003 |
Stock-based detection of protein oligomeric states in jsPISA
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journal
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April 2015 |
Methylation by a Unique α-class N4-Cytosine Methyltransferase Is Required for DNA Transformation of Caldicellulosiruptor bescii DSM6725
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journal
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August 2012 |
Glucosylated Hydroxymethyluracil, DNA Base J, Prevents Transcriptional Readthrough in Leishmania
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journal
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August 2012 |
The structural basis for recognition of base J containing DNA by a novel DNA binding domain in JBP1
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journal
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March 2011 |
Defining the sequence requirements for the positioning of base J in DNA using SMRT sequencing
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journal
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February 2015 |
Identification of a novel base J binding protein complex involved in RNA polymerase II transcription termination in trypanosomes
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journal
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February 2020 |
Chromatin-Associated Protein Complexes Link DNA Base J and Transcription Termination in Leishmania
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journal
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February 2021 |
ARCIMBOLDO_LITE : single-workstation implementation and use
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journal
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August 2015 |
Phaser crystallographic software
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journal
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July 2007 |
Predatory Lifestyle of Bdellovibrio bacteriovorus
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journal
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October 2009 |
Have an Ion on It: The Life‐Cycle of Bdellovibrio bacteriovorus Viewed by Helium‐Ion Microscopy
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journal
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November 2018 |
The First Bite— Profiling the Predatosome in the Bacterial Pathogen Bdellovibrio
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journal
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January 2010 |
Halobacteriovorax, an underestimated predator on bacteria: potential impact relative to viruses on bacterial mortality
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journal
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August 2015 |
The plant immune system
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journal
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November 2006 |
Trichoderma
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journal
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May 2010 |
Trichoderma Research in the Genome Era
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journal
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August 2013 |
Fungal Effector Proteins
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journal
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September 2009 |
Small proteins of plant-pathogenic fungi secreted during host colonization
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journal
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December 2005 |
Identification of effector-like proteins in Trichoderma spp. and role of a hydrophobin in the plant-fungus interaction and mycoparasitism
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journal
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February 2017 |
Expression, purification, crystallization and X-ray diffraction studies of a novel root-induced secreted protein from Trichoderma virens
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journal
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May 2020 |
Secretome of Trichoderma Interacting With Maize Roots: Role in Induced Systemic Resistance*
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journal
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April 2015 |
The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins
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journal
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June 1988 |
A secreted fungal histidine‐ and alanine‐rich protein regulates metal ion homeostasis and oxidative stress
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journal
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May 2020 |
HH-suite3 for fast remote homology detection and deep protein annotation
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journal
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September 2019 |
A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core
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journal
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July 2018 |
High‐accuracy protein structure prediction in CASP14
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journal
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July 2021 |
Engineering protein stability with atomic precision in a monomeric miniprotein
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journal
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May 2017 |
Deciphering the Origin and Evolution of Hepatitis B Viruses by Means of a Family of Non-enveloped Fish Viruses
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journal
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September 2017 |
Slowly folding surface extension in the prototypic avian hepatitis B virus capsid governs stability
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journal
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August 2020 |
Structure of Mutant Hepatitis B Core Protein Capsids with Premature Secretion Phenotype
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journal
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December 2018 |
Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy
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journal
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March 1997 |
The Crystal Structure of the Human Hepatitis B Virus Capsid
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journal
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June 1999 |
Three-dimensional structure of hepatitis B virus core particles determined by electron cryomicroscopy
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journal
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June 1994 |
Cryo-electron microscopy of hepatitis B virions reveals variability in envelope capsid interactions
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journal
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August 2007 |
Native Hepatitis B Virions and Capsids Visualized by Electron Cryomicroscopy
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journal
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June 2006 |
Alkylation damage in DNA and RNA—repair mechanisms and medical significance
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journal
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November 2004 |
Balancing repair and tolerance of DNA damage caused by alkylating agents
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journal
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January 2012 |
Phase I Trial of Temozolomide Plus O 6 -Benzylguanine for Patients With Recurrent or Progressive Malignant Glioma
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journal
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October 2005 |
Flipping of alkylated DNA damage bridges base and nucleotide excision repair
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journal
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June 2009 |
DNA binding, nucleotide flipping, and the helix-turn-helix motif in base repair by O6-alkylguanine-DNA alkyltransferase and its implications for cancer chemotherapy
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journal
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August 2007 |
XRCC1 promotes replication restart, nascent fork degradation and mutagenic DNA repair in BRCA2-deficient cells
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journal
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August 2020 |
Conserved XPB Core Structure and Motifs for DNA Unwinding: Implications for Pathway Selection of Transcription or Excision Repair
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journal
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April 2006 |
XPD Helicase Structures and Activities: Insights into the Cancer and Aging Phenotypes from XPD Mutations
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journal
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May 2008 |
An atypical BRCT–BRCT interaction with the XRCC1 scaffold protein compacts human DNA Ligase IIIα within a flexible DNA repair complex
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journal
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December 2020 |
Uncovering DNA-PKcs ancient phylogeny, unique sequence motifs and insights for human disease
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journal
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October 2020 |
Targeting Allostery with Avatars to Design Inhibitors Assessed by Cell Activity: Dissecting MRE11 Endo- and Exonuclease Activities
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book
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January 2018 |
An effective human uracil-DNA glycosylase inhibitor targets the open pre-catalytic active site conformation
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journal
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August 2021 |
The MRE11–RAD50–NBS1 Complex Conducts the Orchestration of Damage Signaling and Outcomes to Stress in DNA Replication and Repair
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journal
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June 2018 |
Human XPG nuclease structure, assembly, and activities with insights for neurodegeneration and cancer from pathogenic mutations
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journal
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June 2020 |
Envisioning how the prototypic molecular machine TFIIH functions in transcription initiation and DNA repair
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journal
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December 2020 |
Fragment- and structure-based drug discovery for developing therapeutic agents targeting the DNA Damage Response
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journal
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October 2020 |
Transcription preinitiation complex structure and dynamics provide insight into genetic diseases
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journal
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May 2019 |
SLX4IP acts with SLX4 and XPF–ERCC1 to promote interstrand crosslink repair
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journal
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September 2019 |
DNA Unwinding by ASCC3 Helicase Is Coupled to ALKBH3-Dependent DNA Alkylation Repair and Cancer Cell Proliferation
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journal
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November 2011 |
Clinical significance and therapeutic potential of prostate cancer antigen-1/ALKBH3 in human renal cell carcinoma
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journal
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May 2015 |
TP53 gene status is a critical determinant of phenotypes induced by ALKBH3 knockdown in non-small cell lung cancers
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journal
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June 2017 |
ALKBH3 Contributes to Survival and Angiogenesis of Human Urothelial Carcinoma Cells through NADPH Oxidase and Tweak/Fn14/VEGF Signals
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journal
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July 2012 |
ALKBH3, a human AlkB homologue, contributes to cell survival in human non-small-cell lung cancer
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journal
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February 2011 |
PCA-1/ALKBH3 Contributes to Pancreatic Cancer by Supporting Apoptotic Resistance and Angiogenesis
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journal
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July 2012 |
A ubiquitin-dependent signalling axis specific for ALKBH-mediated DNA dealkylation repair
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journal
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November 2017 |
Superoxide Dismutase from the Eukaryotic Thermophile Alvinella pompejana: Structures, Stability, Mechanism, and Insights into Amyotrophic Lateral Sclerosis
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journal
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February 2009 |
Evolving SAXS versatility: solution X-ray scattering for macromolecular architecture, functional landscapes, and integrative structural biology
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journal
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October 2019 |
The R-factor gap in macromolecular crystallography: an untapped potential for insights on accurate structures
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journal
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September 2014 |
A large data set comparison of protein structures determined by crystallography and NMR: Statistical test for structural differences and the effect of crystal packing
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journal
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July 2007 |
Small angle X‐ray scattering‐assisted protein structure prediction in CASP13 and emergence of solution structure differences
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journal
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August 2019 |
Flexible Tethering of ASPP Proteins Facilitates PP-1c Catalysis
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journal
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October 2019 |
HU multimerization shift controls nucleoid compaction
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journal
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July 2016 |
Cancer mutational burden is shaped by G4 DNA, replication stress and mitochondrial dysfunction
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journal
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October 2019 |
AlphaFold2 predicts the inward‐facing conformation of the multidrug transporter LmrP
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journal
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May 2021 |
Assessing the utility of CASP14 models for molecular replacement
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journal
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August 2021 |
Topology evaluation of models for difficult targets in the 14th round of the critical assessment of protein structure prediction (CASP14)
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journal
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July 2021 |
Assessment of the CASP14 assembly predictions
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journal
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August 2021 |
Engineering protein stability with atomic precision in a monomeric miniprotein
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dataset
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January 2017 |