skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Low pH structure of heliorhodopsin reveals chloride binding site and intramolecular signaling pathwa

Journal Article · · Sci. Rep.

Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Organization:
DOE - Office Of Science; FOREIGN
OSTI ID:
1900965
Journal Information:
Sci. Rep., Vol. 12
Country of Publication:
United States
Language:
ENGLISH

References (65)

A distinct abundant group of microbial rhodopsins discovered using functional metagenomics journal June 2018
Microbial Rhodopsins: The Last Two Decades journal October 2021
Photochemical Characterization of a New Heliorhodopsin from the Gram-Negative Eubacterium Bellilinea caldifistulae (BcHeR) and Comparison with Heliorhodopsin-48C12 journal May 2019
Diverse heliorhodopsins detected via functional metagenomics in freshwater Actinobacteria, Chloroflexi and Archaea journal January 2022
High-resolution structural insights into the heliorhodopsin family journal February 2020
Heliorhodopsin Evolution Is Driven by Photosensory Promiscuity in Monoderms journal December 2021
Ancient Family of Retinal Proteins Brought to Light “Sight-Unseen” journal November 2018
Heliorhodopsins are absent in diderm (Gram‐negative) bacteria: Some thoughts and possible implications for activity journal January 2019
Microbial and Animal Rhodopsins: Structures, Functions, and Molecular Mechanisms journal September 2013
Crystal structure of heliorhodopsin 48C12 journal December 2019
Resonance Raman Investigation of the Chromophore Structure of Heliorhodopsins journal October 2018
Ultrafast Dynamics of Heliorhodopsins journal February 2019
Mutation Study of Heliorhodopsin 48C12 journal July 2018
Anion binding to mutants of the Schiff base counterion in heliorhodopsin 48C12 journal January 2019
Crystal structure of heliorhodopsin journal September 2019
Color-tuning of natural variants of heliorhodopsin journal January 2021
The photochemical reactions of bacterial sensory rhodopsin-I. Flash photolysis study in the one microsecond to eight second time window journal December 1987
The Transducer Protein HtrII Modulates the Lifetimes of Sensory Rhodopsin II Photointermediates journal November 1998
Functional characterization of sensory rhodopsin II from Halobacterium salinarum expressed in Escherichia coli journal May 2005
Resonance Raman spectroscopy of sensory rhodopsin II from Natronobacterium pharaonis journal April 2000
Spectroscopic Evidence for the Formation of an N Intermediate during the Photocycle of Sensory Rhodopsin II (Phoborhodopsin) from Natronobacterium pharaonis journal February 2011
DEER Distance Measurements on Proteins journal May 2012
Electron paramagnetic resonance spectroscopy on G-protein-coupled receptors: Adopting strategies from related model systems journal August 2021
Conformational equilibria of light-activated rhodopsin in nanodiscs journal April 2017
Long Distance Measurements up to 160 Å in the GroEL Tetradecamer Using Q-Band DEER EPR Spectroscopy journal November 2016
Long-range distance determination in fully deuterated RNA with pulsed EPR spectroscopy journal January 2022
New limits of sensitivity of site-directed spin labeling electron paramagnetic resonance for membrane proteins journal April 2018
X-ray Crystallographic Structure and Oligomerization of Gloeobacter Rhodopsin journal August 2019
The contribution of modern EPR to structural biology journal February 2018
Crystallization of Membrane Proteins in Bicelles book January 2012
Structural basis for unique color tuning mechanism in heliorhodopsin journal December 2020
Zinc Binding to Heliorhodopsin journal September 2020
HOLLOW: Generating Accurate Representations of Channel and Interior Surfaces in Molecular Structures journal January 2008
Chloride and proton transport in bacteriorhodopsin mutant D85T: different modes of ion translocation in a retinal protein 1 1Edited by A.R.Fersht journal August 1997
The retinylidene Schiff base counterion in bacteriorhodopsin. journal October 1991
On the molecular mechanism of the blue to purple transition of bacteriorhodopsin. UV-difference spectroscopy and electron spin resonance studies. journal June 1988
Light-Induced Conformational Alterations in Heliorhodopsin Triggered by the Retinal Excited State journal August 2021
Crystal Structures of Acid Blue and Alkaline Purple Forms of Bacteriorhodopsin journal August 2005
Probing Allosteric Mechanism with Long-Range Rigidity Transmission Across Protein Networks book December 2020
Protein flexibility predictions using graph theory journal January 2001
Mechanistic insights into allosteric regulation of the A2A adenosine G protein-coupled receptor by physiological cations journal April 2018
Counting out to the flexibility of molecules journal November 2005
New Developments in Spin Labels for Pulsed Dipolar EPR journal October 2014
MMM: A toolbox for integrative structure modeling: A toolbox for integrative structure modeling journal September 2017
Electron-electron double resonance in electron spin echo: Model biradical systems and the sensitized photolysis of decalin journal September 1984
Sensitivity enhancement in pulse EPR distance measurements journal July 2004
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models journal November 2021
Highly accurate protein structure prediction with AlphaFold journal July 2021
xia2 : an expert system for macromolecular crystallography data reduction journal December 2009
How good are my data and what is the resolution? journal June 2013
Overview of the CCP 4 suite and current developments journal March 2011
Phaser crystallographic software journal July 2007
Features and development of Coot journal March 2010
PHENIX: a comprehensive Python-based system for macromolecular structure solution journal January 2010
Clustal W and Clustal X version 2.0 journal September 2007
The rapid generation of mutation data matrices from protein sequences journal January 1992
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms journal May 2018
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation journal October 2006
DeerAnalysis2006—a comprehensive software package for analyzing pulsed ELDOR data journal June 2006
Optimal Tikhonov regularization for DEER spectroscopy journal March 2018
Rotamer libraries of spin labelled cysteines for protein studies journal January 2011
Delineating the conformational landscape of the adenosine A2A receptor during G protein coupling journal April 2021
Structural and Functional Analysis of Proteins Using Rigidity Theory book October 2021
Generating stereochemically acceptable protein pathways journal September 2010
Hyperphosphorylation of Intrinsically Disordered Tau Protein Induces an Amyloidogenic Shift in Its Conformational Ensemble journal March 2015