Convolutional dictionary learning for blind deconvolution of optical coherence tomography images

Wang, Junzhe; Wohlberg, Brendt Egon; Adamson, Robert

doi:10.1364/BOE.447394

Convolutional dictionary learning for blind deconvolution of optical coherence tomography images

Journal Article · 01 April 2022 · Biomedical Optics Express

DOI:https://doi.org/10.1364/BOE.447394· OSTI ID:1883151

Wang, Junzhe ^[1]; ^[2]; Adamson, Robert ^[1]

Dalhousie University
Los Alamos National Laboratory

Research Organization:: Los Alamos National Laboratory (LANL)

Sponsoring Organization:: LDRD

DOE Contract Number:: 89233218CNA000001

OSTI ID:: 1883151

Report Number(s):: LA-UR-22-21235

Journal Information:: Biomedical Optics Express, Journal Name: Biomedical Optics Express Journal Issue: 4 Vol. 13; ISSN 2156-7085

Country of Publication:: United States

Language:: English

References (52)

Akinetic all-semiconductor programmable swept-source at 1550 nm and 1310 nm with centimeters coherence length Bonesi, M.; Minneman, M. P.; Ensher, J. Optics Express, Vol. 22, Issue 3 https://doi.org/10.1364/OE.22.002632	journal	January 2014
Multi-shaping technique reduces sidelobe magnitude in optical coherence tomography Chen, Yu; Fingler, Jeff; Fraser, Scott E. Biomedical Optics Express, Vol. 8, Issue 11 https://doi.org/10.1364/BOE.8.005267	journal	January 2017
PSF Estimation in Crowded Astronomical Imagery as a Convolutional Dictionary Learning Problem Wohlberg, Brendt; Wozniak, Przemek IEEE Signal Processing Letters, Vol. 28 https://doi.org/10.1109/LSP.2021.3050706	journal	January 2021
Stochastic speckle noise compensation in optical coherence tomography using non-stationary spline-based speckle noise modelling Cameron, Andrew; Lui, Dorothy; Boroomand, Ameneh Biomedical Optics Express, Vol. 4, Issue 9 https://doi.org/10.1364/BOE.4.001769	journal	January 2013
A ‘missing’ family of classical orthogonal polynomials Vinet, Luc; Zhedanov, Alexei Journal of Physics A: Mathematical and Theoretical, Vol. 44, Issue 8 https://doi.org/10.1088/1751-8113/44/8/085201	journal	January 2011
Learning Convolutional Sparse Coding on Complex Domain for Interferometric Phase Restoration Kang, Jian; Hong, Danfeng; Liu, Jialin IEEE Transactions on Neural Networks and Learning Systems, Vol. 32, Issue 2 https://doi.org/10.1109/TNNLS.2020.2979546	journal	February 2021
Image Quality Assessment: From Error Visibility to Structural Similarity Wang, Z.; Bovik, A. C.; Sheikh, H. R. IEEE Transactions on Image Processing, Vol. 13, Issue 4 https://doi.org/10.1109/TIP.2003.819861	journal	April 2004
Context-Dependent Piano Music Transcription With Convolutional Sparse Coding Cogliati, Andrea; Duan, Zhiyao; Wohlberg, Brendt IEEE/ACM Transactions on Audio, Speech, and Language Processing, Vol. 24, Issue 12 https://doi.org/10.1109/TASLP.2016.2598305	journal	December 2016
Fourier-Domain Optical Coherence Tomography Signal Analysis and Numerical Modeling Kalkman, J. International Journal of Optics, Vol. 2017 https://doi.org/10.1155/2017/9586067	journal	January 2017
Automatic estimation of point-spread-function for deconvoluting out-of-focus optical coherence tomographic images using information entropy-based approach Liu, Guozhong; Yousefi, Siavash; Zhi, Zhongwei Optics Express, Vol. 19, Issue 19 https://doi.org/10.1364/OE.19.018135	journal	January 2011
Compressive SD-OCT: the application of compressed sensing in spectral domain optical coherence tomography Liu, Xuan; Kang, Jin U. Optics Express, Vol. 18, Issue 21 https://doi.org/10.1364/OE.18.022010	journal	January 2010
In vivo ultrahigh-resolution optical coherence tomography Drexler, W.; Morgner, U.; Kärtner, F. X. Optics Letters, Vol. 24, Issue 17, p. 1221-1223 https://doi.org/10.1364/OL.24.001221	journal	January 1999
Structural validation of oral mucosal tissue using optical coherence tomography Hamdoon, Zaid; Jerjes, Waseem; Al-Delayme, Raed Head & Neck Oncology, Vol. 4, Issue 1 https://doi.org/10.1186/1758-3284-4-29	journal	June 2012
Distributed Basis Pursuit Mota, João F. C.; Xavier, João M. F.; Aguiar, Pedro M. Q. IEEE Transactions on Signal Processing, Vol. 60, Issue 4 https://doi.org/10.1109/TSP.2011.2182347	journal	April 2012
Sparse signal representation and its applications in ultrasonic NDE Zhang, Guang-Ming; Zhang, Cheng-Zhong; Harvey, David M. Ultrasonics, Vol. 52, Issue 3 https://doi.org/10.1016/j.ultras.2011.10.001	journal	March 2012
The Generalized Contrast-to-Noise Ratio: A Formal Definition for Lesion Detectability Rodriguez-Molares, Alfonso; Rindal, Ole Marius Hoel; D'hooge, Jan IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, Vol. 67, Issue 4 https://doi.org/10.1109/TUFFC.2019.2956855	journal	April 2020
Signal processing for sidelobe suppression in optical coherence tomography images Wang, Yingli; Liang, Yanmei; Xu, Kuanhong Journal of the Optical Society of America A, Vol. 27, Issue 3 https://doi.org/10.1364/JOSAA.27.000415	journal	January 2010
Blind image deconvolution Kundur, D.; Hatzinakos, D. IEEE Signal Processing Magazine, Vol. 13, Issue 3 https://doi.org/10.1109/79.489268	journal	May 1996
The Use of Optical Coherence Tomography in Dental Diagnostics: A State-of-the-Art Review Machoy, Monika; Seeliger, Julia; Szyszka-Sommerfeld, Liliana Journal of Healthcare Engineering, Vol. 2017 https://doi.org/10.1155/2017/7560645	journal	January 2017
Interferometric Phase Image Estimation via Sparse Coding in the Complex Domain Hongxing, Hao; Bioucas-Dias, Jose M.; Katkovnik, Vladimir IEEE Transactions on Geoscience and Remote Sensing, Vol. 53, Issue 5 https://doi.org/10.1109/TGRS.2014.2361919	journal	May 2015
Optical coherence tomography in dermatology Sattler, Elke; Kästle, Raphaela; Welzel, Julia Journal of Biomedical Optics, Vol. 18, Issue 6 https://doi.org/10.1117/1.JBO.18.6.061224	journal	January 2013
In situ imaging of lung alveoli with an optical coherence tomography needle probe Quirk, Bryden C.; McLaughlin, Robert A.; Curatolo, Andrea Journal of Biomedical Optics, Vol. 16, Issue 3 https://doi.org/10.1117/1.3556719	journal	January 2011
Optical coherence tomography use in the diagnosis of enamel defects Al-Azri, Khalifa; Melita, Lucia N.; Strange, Adam P. Journal of Biomedical Optics, Vol. 21, Issue 3 https://doi.org/10.1117/1.JBO.21.3.036004	journal	March 2016
Sensitivity advantage of swept source and Fourier domain optical coherence tomography Choma, Michael; Sarunic, Marinko; Yang, Changhuei Optics Express, Vol. 11, Issue 18, p. 2183-2189 https://doi.org/10.1364/OE.11.002183	journal	January 2003
Spatially deconvolved optical coherence tomography Woolliams, Peter D.; Ferguson, Robert A.; Hart, Christian Applied Optics, Vol. 49, Issue 11 https://doi.org/10.1364/AO.49.002014	journal	January 2010
Homotopic, non-local sparse reconstruction of optical coherence tomography imagery Liu, Chenyi; Wong, Alexander; Bizheva, Kostadinka Optics Express, Vol. 20, Issue 9 https://doi.org/10.1364/OE.20.010200	journal	January 2012
Convolutional Dictionary Learning: A Comparative Review and New Algorithms Garcia-Cardona, Cristina; Wohlberg, Brendt IEEE Transactions on Computational Imaging, Vol. 4, Issue 3 https://doi.org/10.1109/TCI.2018.2840334	journal	September 2018
Image quality improvement in optical coherence tomography using Lucy–Richardson deconvolution algorithm Hojjatoleslami, S. A.; Avanaki, M. R. N.; Podoleanu, A. Gh. Applied Optics, Vol. 52, Issue 23 https://doi.org/10.1364/AO.52.005663	journal	January 2013
Reference spectrum extraction and fixed-pattern noise removal in optical coherence tomography Moon, Sucbei; Lee, Sang-Won; Chen, Zhongping Optics Express, Vol. 18, Issue 24 https://doi.org/10.1364/OE.18.024395	journal	January 2010
Optical coherence tomography in the assessment of oral squamous cell carcinoma resection margins Hamdoon, Zaid; Jerjes, Waseem; McKenzie, Gordon Photodiagnosis and Photodynamic Therapy, Vol. 13 https://doi.org/10.1016/j.pdpdt.2015.07.170	journal	March 2016
Optical coherence tomography: fundamental principles, instrumental designs and biomedical applications Popescu, Dan P.; Choo-Smith, Lin-P’ing; Flueraru, Costel Biophysical Reviews, Vol. 3, Issue 3 https://doi.org/10.1007/s12551-011-0054-7	journal	August 2011
Cancellation of coherent artifacts in optical coherence tomography imaging Piao, Daqing; Zhu, Quing; Dutta, Niloy K. Applied Optics, Vol. 40, Issue 28 https://doi.org/10.1364/AO.40.005124	journal	January 2001
Discovering governing equations from data by sparse identification of nonlinear dynamical systems Brunton, Steven L.; Proctor, Joshua L.; Kutz, J. Nathan Proceedings of the National Academy of Sciences, Vol. 113, Issue 15 https://doi.org/10.1073/pnas.1517384113	journal	March 2016
Picometer scale vibrometry in the human middle ear using a surgical microscope based optical coherence tomography and vibrometry system Kim, Wihan; Kim, Sangmin; Huang, Shuning Biomedical Optics Express, Vol. 10, Issue 9 https://doi.org/10.1364/BOE.10.004395	journal	January 2019
Efficient Algorithms for Convolutional Sparse Representations Wohlberg, Brendt IEEE Transactions on Image Processing, Vol. 25, Issue 1 https://doi.org/10.1109/TIP.2015.2495260	journal	January 2016
Properties of basis functions generated by shift invariant sparse representations of natural images Hashimoto, Wakako; Kurata, Koji Biological Cybernetics, Vol. 83, Issue 2 https://doi.org/10.1007/s004220000149	journal	July 2000
Restoration of Optical Coherence Images of Living Tissue Using the CLEAN Algorithm Schmitt, Joseph M. Journal of Biomedical Optics, Vol. 3, Issue 1 https://doi.org/10.1117/1.429863	journal	January 1998
Estimating the effective number of looks in interferometric SAR data Gierull, C. H.; Sikaneta, I. C. IEEE Transactions on Geoscience and Remote Sensing, Vol. 40, Issue 8 https://doi.org/10.1109/TGRS.2002.802457	journal	August 2002
Long-range, wide-field swept-source optical coherence tomography with GPU accelerated digital lock-in Doppler vibrography for real-time, in vivo middle ear diagnostics MacDougall, Dan; Farrell, Joshua; Brown, Jeremy Biomedical Optics Express, Vol. 7, Issue 11 https://doi.org/10.1364/BOE.7.004621	journal	January 2016
Sparsity based denoising of spectral domain optical coherence tomography images Fang, Leyuan; Li, Shutao; Nie, Qing Biomedical Optics Express, Vol. 3, Issue 5 https://doi.org/10.1364/BOE.3.000927	journal	January 2012
Deconvolution with fall-off compensated axial point spread function in spectral domain optical coherence tomography Wang, Kai; Ding, Zhihua; Chen, Minghui Optics Communications, Vol. 284, Issue 12 https://doi.org/10.1016/j.optcom.2011.02.074	journal	June 2011
Improving lateral resolution and image quality of optical coherence tomography by the multi-frame superresolution technique for 3D tissue imaging Shen, Kai; Lu, Hui; Baig, Sarfaraz Biomedical Optics Express, Vol. 8, Issue 11 https://doi.org/10.1364/BOE.8.004887	journal	January 2017
Axial resolution improvement by modulated deconvolution in Fourier domain optical coherence tomography Bousi, Evgenia; Pitris, Costas Journal of Biomedical Optics, Vol. 17, Issue 7 https://doi.org/10.1117/1.JBO.17.7.071307	journal	May 2012
Application of the generalized contrast-to-noise ratio to assess photoacoustic image quality Kempski, Kelley M.; Graham, Michelle T.; Gubbi, Mardava R. Biomedical Optics Express, Vol. 11, Issue 7 https://doi.org/10.1364/BOE.391026	journal	January 2020
Theory, developments and applications of optical coherence tomography Tomlins, P. H.; Wang, R. K. Journal of Physics D: Applied Physics, Vol. 38, Issue 15 https://doi.org/10.1088/0022-3727/38/15/002	journal	July 2005
Depth extension and sidelobe suppression in optical coherence tomography using pupil filters Yu, Xiaojun; Liu, Xinyu; Gu, Jun Optics Express, Vol. 22, Issue 22 https://doi.org/10.1364/OE.22.026956	journal	January 2014
Optimally sparse representation in general (nonorthogonal) dictionaries via ℓ¹ minimization Donoho, D. L.; Elad, M. Proceedings of the National Academy of Sciences, Vol. 100, Issue 5, p. 2197-2202 https://doi.org/10.1073/pnas.0437847100	journal	February 2003
Optical coherence tomography system requirements for clinical diagnostic middle ear imaging MacDougall, Dan; Rainsbury, James; Brown, Jeremy Journal of Biomedical Optics, Vol. 20, Issue 5 https://doi.org/10.1117/1.JBO.20.5.056008	journal	May 2015
3-D Adaptive Sparsity Based Image Compression With Applications to Optical Coherence Tomography Fang, Leyuan; Li, Shutao; Kang, Xudong IEEE Transactions on Medical Imaging, Vol. 34, Issue 6 https://doi.org/10.1109/TMI.2014.2387336	journal	June 2015
Optical coherence tomography - principles and applications Fercher, A. F.; Drexler, W.; Hitzenberger, C. K. Reports on Progress in Physics, Vol. 66, Issue 2 https://doi.org/10.1088/0034-4885/66/2/204	journal	January 2003
Optical coherence tomography: imaging the larynx Burns, James A. Current Opinion in Otolaryngology & Head and Neck Surgery, Vol. 20, Issue 6 https://doi.org/10.1097/MOO.0b013e3283582d7d	journal	January 2012
A Survey of Sparse Representation: Algorithms and Applications Zhang, Zheng; Xu, Yong; Yang, Jian IEEE Access, Vol. 3 https://doi.org/10.1109/ACCESS.2015.2430359	journal	January 2015

Similar Records

Convolutional dictionary learning for blind deconvolution of optical coherence tomography images

Journal Article · 2022 · Biomedical Optics Express · OSTI ID:1847176

Convolutional Dictionary Learning: A Comparative Review and New Algorithms

Journal Article · 2018 · IEEE Transactions on Computational Imaging · OSTI ID:1711366

PSF Estimation in Crowded Astronomical Imagery as a Convolutional Dictionary Learning Problem

Journal Article · 2021 · IEEE Signal Processing Letters · OSTI ID:1804355

Related Subjects

Information Science
Mathematics

Convolutional dictionary learning for blind deconvolution of optical coherence tomography images

Citation Formats

References (52)

Similar Records

Related Subjects