skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Solution Structural Studies of Pre-amyloid Oligomer States of the Biofilm Protein Aap

Journal Article · · J. Mol. Biol.

Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Organization:
DOE - Office Of Science; National Institutes of Health (NIH)
OSTI ID:
1878386
Journal Information:
J. Mol. Biol., Vol. 434, Issue (16)
Country of Publication:
United States
Language:
ENGLISH

References (73)

Staphylococcus epidermidis — the 'accidental' pathogen journal August 2009
Surface Proteins of Staphylococcus epidermidis journal July 2020
Bacterial surface properties of clinically isolatedStaphylococcus epidermidis strains determine adhesion on polyethylene journal December 1998
Polysaccharide intercellular adhesin or protein factors in biofilm accumulation of Staphylococcus epidermidis and Staphylococcus aureus isolated from prosthetic hip and knee joint infections journal March 2007
Accumulation-Associated Protein Enhances Staphylococcus epidermidis Biofilm Formation under Dynamic Conditions and Is Required for Infection in a Rat Catheter Model journal October 2014
Glycan-Dependent Corneocyte Adherence of Staphylococcus epidermidis Mediated by the Lectin Subdomain of Aap journal August 2021
Role for the A Domain of Unprocessed Accumulation-Associated Protein (Aap) in the Attachment Phase of the Staphylococcus epidermidis Biofilm Phenotype journal December 2014
The Terminal A Domain of the Fibrillar Accumulation-Associated Protein (Aap) of Staphylococcus epidermidis Mediates Adhesion to Human Corneocytes journal November 2009
The metalloprotease SepA governs processing of accumulation-associated protein and shapes intercellular adhesive surface properties in S taphylococcus epidermidis: Metalloprotease SepA journal January 2017
A zinc-dependent adhesion module is responsible for intercellular adhesion in staphylococcal biofilms journal December 2008
The Proline/Glycine-Rich Region of the Biofilm Adhesion Protein Aap Forms an Extended Stalk that Resists Compaction journal January 2017
Induction of Staphylococcus epidermidis biofilm formation via proteolytic processing of the accumulation-associated protein by staphylococcal and host proteases: Aap mediated S. epidermidis biofilm formation journal January 2005
The biofilm adhesion protein Aap from Staphylococcus epidermidis forms zinc-dependent amyloid fibers journal April 2020
Functional consequences of B-repeat sequence variation in the staphylococcal biofilm protein Aap: deciphering the assembly code journal January 2017
Structural basis for Zn2+-dependent intercellular adhesion in staphylococcal biofilms journal December 2012
Defining the metal specificity of a multifunctional biofilm adhesion protein: Metal Specificity of Aap Assembly journal July 2017
The staphylococcal biofilm protein Aap forms a tetrameric species as a necessary intermediate before amyloidogenesis journal September 2020
Role of Escherichia coli Curli Operons in Directing Amyloid Fiber Formation journal February 2002
Diversity, biogenesis and function of microbial amyloids journal February 2012
Amyloid fibers provide structural integrity to Bacillus subtilis biofilms journal January 2010
Amyloid Structures as Biofilm Matrix Scaffolds journal May 2016
The Amyloid State of Proteins in Human Diseases journal March 2012
The expanding amyloid family: Structure, stability, function, and pathogenesis journal September 2021
Arrangement of subunits and ordering of β-strands in an amyloid sheet journal September 2002
The role of Staphylococcus aureus surface protein SasG in adherence and biofilm formation journal August 2007
Improved methods for fitting sedimentation coefficient distributions derived by time-derivative techniques journal July 2006
Boundary analysis in sedimentation transport experiments: A procedure for obtaining sedimentation coefficient distributions using the time derivative of the concentration profile journal June 1992
Methodological aspects of gel filtration with special reference to desalting operations journal January 1961
Viscous fingering in packed chromatographic columns: Linear stability analysis journal May 2007
Viscous fingering in chromatography visualized via magnetic resonance imaging journal July 1994
Proximity energies: a framework for understanding concentrated solutions: PROXIMITY ENERGIES journal February 2012
Analysis of nonideality: insights from high concentration simulations of sedimentation velocity data journal November 2020
Weak Interactions Govern the Viscosity of Concentrated Antibody Solutions: High-Throughput Analysis Using the Diffusion Interaction Parameter journal July 2012
Small-angle scattering studies of biological macromolecules in solution journal September 2003
A practical guide to small angle X-ray scattering (SAXS) of flexible and intrinsically disordered proteins journal August 2015
Effect of interdomain dynamics on the structure determination of modular proteins by small-angle scattering journal October 2009
Structural Characterization of Flexible Proteins Using Small-Angle X-ray Scattering journal May 2007
Advanced ensemble modelling of flexible macromolecules using X-ray solution scattering journal February 2015
2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update journal August 2017
SASSIE: A program to study intrinsically disordered biological molecules and macromolecular ensembles using experimental scattering restraints journal February 2012
Cooperative folding of intrinsically disordered domains drives assembly of a strong elongated protein journal June 2015
Validating Solution Ensembles from Molecular Dynamics Simulation by Wide-Angle X-ray Scattering Data journal July 2014
WAXSiS: a web server for the calculation of SAXS/WAXS curves based on explicit-solvent molecular dynamics journal April 2015
HullRad: Fast Calculations of Folded and Disordered Protein and Nucleic Acid Hydrodynamic Properties journal February 2018
A Consensus Method for the Prediction of ‘Aggregation-Prone’ Peptides in Globular Proteins journal January 2013
Atomic structures of amyloid cross-β spines reveal varied steric zippers journal April 2007
Role of Intermolecular Forces in Defining Material Properties of Protein Nanofibrils journal December 2007
Protein folding and misfolding journal December 2003
Protein Misfolding, Amyloid Formation, and Human Disease: A Summary of Progress Over the Last Decade journal June 2017
Amyloid assembly and disassembly journal April 2018
Size-Distribution Analysis of Macromolecules by Sedimentation Velocity Ultracentrifugation and Lamm Equation Modeling journal March 2000
Calculations and Publication-Quality Illustrations for Analytical Ultracentrifugation Data book January 2015
Using circular dichroism collected as a function of temperature to determine the thermodynamics of protein unfolding and binding interactions journal December 2006
Improved radiation dose efficiency in solution SAXS using a sheath flow sample environment journal November 2016
BioXTAS RAW : improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis journal September 2017
Small-angle scattering: a view on the properties, structures and structural changes of biological macromolecules in solution journal May 2003
BioXTAS RAW , a software program for high-throughput automated small-angle X-ray scattering data reduction and preliminary analysis journal August 2009
PRIMUS: a Windows PC-based system for small-angle scattering data analysis journal September 2003
CRYSOL – a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates journal December 1995
Protein hydration in solution: Experimental observation by x-ray and neutron scattering journal March 1998
Accurate SAXS Profile Computation and its Assessment by Contrast Variation Experiments journal August 2013
Rapid and accurate calculation of small-angle scattering profiles using the golden ratio journal July 2013
Interpretation of Solution X-Ray Scattering by Explicit-Solvent Molecular Dynamics journal May 2015
GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers journal September 2015
Improved side-chain torsion potentials for the Amber ff99SB protein force field journal January 2010
Comparison of multiple Amber force fields and development of improved protein backbone parameters journal November 2006
Comparison of simple potential functions for simulating liquid water journal July 1983
Canonical sampling through velocity rescaling journal January 2007
Molecular dynamics with coupling to an external bath journal October 1984
Settle: An analytical version of the SHAKE and RATTLE algorithm for rigid water models journal October 1992
P-LINCS:  A Parallel Linear Constraint Solver for Molecular Simulation journal December 2007
Particle mesh Ewald: An N ⋅log( N ) method for Ewald sums in large systems journal June 1993
Interpreting solution X-ray scattering data using molecular simulations journal April 2018