Site-directed mutagenesis of Serine-72 reveals the location of the fructose 6-phosphate regulatory s

Alghamdi, Mashael A.; Hussien, Rania A.; Zheng, Yuanzhang; Patel, Hiral P.; Asencion Diez, Matias D.; Iglesias, Alberto A.; Liu, Dali; Ballicora, Miguel A.

doi:10.1002/pro.4376

Site-directed mutagenesis of Serine-72 reveals the location of the fructose 6-phosphate regulatory s

Journal Article · 01 July 2022 · Protein Sci.

DOI:https://doi.org/10.1002/pro.4376· OSTI ID:1877224

Alghamdi, Mashael A.; Hussien, Rania A.; Zheng, Yuanzhang; Patel, Hiral P.; Asencion Diez, Matias D.; Iglesias, Alberto A.; Liu, Dali; Ballicora, Miguel A.

Research Organization:: Advanced Photon Source (APS), Argonne National Laboratory (ANL), Argonne, IL (US)

Sponsoring Organization:: DOE - Office Of Science; NSF

OSTI ID:: 1877224

Journal Information:: Protein Sci., Journal Name: Protein Sci. Journal Issue: (7) Vol. 31

Country of Publication:: United States

Language:: ENGLISH

References (43)

The use of differential scanning fluorimetry to detect ligand interactions that promote protein stability Niesen, Frank H.; Berglund, Helena; Vedadi, Masoud Nature Protocols, Vol. 2, Issue 9 https://doi.org/10.1038/nprot.2007.321	journal	September 2007
Crystal structure of potato tuber ADP-glucose pyrophosphorylase Jin, Xiangshu; Ballicora, Miguel A.; Preiss, Jack The EMBO Journal, Vol. 24, Issue 4 https://doi.org/10.1038/sj.emboj.7600551	journal	February 2005
Structural analysis reveals a pyruvate-binding activator site in the Agrobacterium tumefaciens ADP–glucose pyrophosphorylase Hill, Benjamin L.; Mascarenhas, Romila; Patel, Hiral P. Journal of Biological Chemistry, Vol. 294, Issue 4 https://doi.org/10.1074/jbc.RA118.004246	journal	January 2019
Improving starch yield in cereals by over-expression of ADPglucose pyrophosphorylase: Expectations and unanticipated outcomes Tuncel, Aytug; Okita, Thomas W. Plant Science, Vol. 211 https://doi.org/10.1016/j.plantsci.2013.06.009	journal	October 2013
Crystal Structures of Escherichia coli Branching Enzyme in Complex with Linear Oligosaccharides Feng, Lei; Fawaz, Remie; Hovde, Stacy Biochemistry, Vol. 54, Issue 40 https://doi.org/10.1021/acs.biochem.5b00228	journal	September 2015
Scaling and assessment of data quality Evans, Philip Acta Crystallographica Section D Biological Crystallography, Vol. 62, Issue 1, p. 72-82 https://doi.org/10.1107/S0907444905036693	journal	December 2005
The CCP4 suite programs for protein crystallography No authors listed Acta Crystallographica Section D Biological Crystallography, Vol. 50, Issue 5, p. 760-763 https://doi.org/10.1107/S0907444994003112	journal	September 1994
Enzymic Synthesis of Adenosine Diphosphate Glucose from Glucose 1-Phosphate and Adenosine Triphosphate Espada, Joaquin Journal of Biological Chemistry, Vol. 237, Issue 12 https://doi.org/10.1016/S0021-9258(19)84491-5	journal	December 1962
Escherichia coli E-39 ADPglucose synthetase has different activation kinetics from the wild-type allosteric enzyme Gardiol, Alicia; Preiss, Jack Archives of Biochemistry and Biophysics, Vol. 280, Issue 1 https://doi.org/10.1016/0003-9861(90)90533-5	journal	July 1990
ADP-Glucose Pyrophosphorylase, a Regulatory Enzyme for Bacterial Glycogen Synthesis Ballicora, M. A.; Iglesias, A. A.; Preiss, J. Microbiology and Molecular Biology Reviews, Vol. 67, Issue 2 https://doi.org/10.1128/MMBR.67.2.213-225.2003	journal	June 2003
Mechanistic insights into the allosteric regulation of bacterial ADP-glucose pyrophosphorylases Comino, Natalia; Cifuente, Javier O.; Marina, Alberto Journal of Biological Chemistry, Vol. 292, Issue 15 https://doi.org/10.1074/jbc.M116.773408	journal	February 2017
A colorimetric method for the assay of ADP-glucose pyrophosphorylase Fusari, Corina; Demonte, Ana M.; Figueroa, Carlos M. Analytical Biochemistry, Vol. 352, Issue 1 https://doi.org/10.1016/j.ab.2006.01.024	journal	May 2006
Genetic modification of cassava for enhanced starch production Ihemere, Uzoma; Arias-Garzon, Diana; Lawrence, Susan Plant Biotechnology Journal, Vol. 4, Issue 4 https://doi.org/10.1111/j.1467-7652.2006.00195.x	journal	July 2006
Overview of the CCP 4 suite and current developments Winn, Martyn D.; Ballard, Charles C.; Cowtan, Kevin D. Acta Crystallographica Section D Biological Crystallography, Vol. 67, Issue 4 https://doi.org/10.1107/S0907444910045749	journal	March 2011
Crystal structure of glycogen synthase: homologous enzymes catalyze glycogen synthesis and degradation Buschiazzo, Alejandro; Ugalde, Juan E.; Guerin, Marcelo E. The EMBO Journal, Vol. 23, Issue 16 https://doi.org/10.1038/sj.emboj.7600324	journal	July 2004
On the simultaneous activation of Agrobacterium tumefaciens ADP-glucose pyrophosphorylase by pyruvate and fructose 6-phosphate Asencion Diez, Matías D.; Figueroa, Carlos M.; Esper, María C. Biochimie, Vol. 171-172 https://doi.org/10.1016/j.biochi.2020.01.012	journal	April 2020
PHENIX : building new software for automated crystallographic structure determination Adams, Paul D.; Grosse-Kunstleve, Ralf W.; Hung, Li-Wei Acta Crystallographica Section D Biological Crystallography, Vol. 58, Issue 11 https://doi.org/10.1107/S0907444902016657	journal	October 2002
DIALS : implementation and evaluation of a new integration package Winter, Graeme; Waterman, David G.; Parkhurst, James M. Acta Crystallographica Section D Structural Biology, Vol. 74, Issue 2 https://doi.org/10.1107/S2059798317017235	journal	February 2018
Bacterial glycogen and plant starch biosynthesis Iglesias, Alberto A.; Preiss, Jack Biochemical Education, Vol. 20, Issue 4 https://doi.org/10.1016/0307-4412(92)90191-N	journal	October 1992
Structure, function, and evolution of plant ADP-glucose pyrophosphorylase Figueroa, Carlos M.; Asencion Diez, Matías D.; Ballicora, Miguel A. Plant Molecular Biology, Vol. 108, Issue 4-5 https://doi.org/10.1007/s11103-021-01235-8	journal	January 2022
ADPglucose pyrophosphorylase’s N-terminus: Structural role in allosteric regulation Bejar, C. M.; Ballicora, M. A.; Iglesias, A. A. Biochemical and Biophysical Research Communications, Vol. 343, Issue 1 https://doi.org/10.1016/j.bbrc.2006.02.123	journal	April 2006
Regulation of the Amount of Starch in Plant Tissues by ADP Glucose Pyrophosphorylase Stark, D. M.; Timmerman, K. P.; Barry, G. F. Science, Vol. 258, Issue 5080 https://doi.org/10.1126/science.258.5080.287	journal	October 1992
Understanding the allosteric trigger for the fructose-1,6-bisphosphate regulation of the ADP-glucose pyrophosphorylase from Escherichia coli Figueroa, Carlos M.; Esper, María C.; Bertolo, Ana Biochimie, Vol. 93, Issue 10 https://doi.org/10.1016/j.biochi.2011.06.029	journal	October 2011
A Novel Dual Allosteric Activation Mechanism of Escherichia coli ADP-Glucose Pyrophosphorylase: The Role of Pyruvate Asención Diez, Matías D.; Aleanzi, Mabel C.; Iglesias, Alberto A. PLoS ONE, Vol. 9, Issue 8 https://doi.org/10.1371/journal.pone.0103888	journal	August 2014
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Thompson, Julie D.; Higgins, Desmond G.; Gibson, Toby J. Nucleic Acids Research, Vol. 22, Issue 22, p. 4673-4680 https://doi.org/10.1093/nar/22.22.4673	journal	January 1994
Coot model-building tools for molecular graphics Emsley, Paul; Cowtan, Kevin Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 12, p. 2126-2132 https://doi.org/10.1107/S0907444904019158	journal	November 2004
Characterization of Chimeric ADPglucose Pyrophosphorylases of Escherichia coli and Agrobacterium tumefaciens . Importance of the C-Terminus on the Selectivity for Allosteric Regulators ^† Ballicora, Miguel A.; Sesma, Juliana I.; Iglesias, Alberto A. Biochemistry, Vol. 41, Issue 30 https://doi.org/10.1021/bi025793b	journal	July 2002
Structural Analysis of ADP-Glucose Pyrophosphorylase from the Bacterium Agrobacterium tumefaciens ^† ^, ^‡ Cupp-Vickery, Jill R.; Igarashi, Robert Y.; Perez, Marco Biochemistry, Vol. 47, Issue 15 https://doi.org/10.1021/bi701933q	journal	April 2008
Identification of Regions Critically Affecting Kinetics and Allosteric Regulation of the Escherichia coli ADP-Glucose Pyrophosphorylase by Modeling and Pentapeptide-Scanning Mutagenesis Ballicora, Miguel A.; Erben, Esteban D.; Yazaki, Terutaka Journal of Bacteriology, Vol. 189, Issue 14 https://doi.org/10.1128/JB.00481-07	journal	July 2007
Conserved residues of the Pro103-Arg115 loop are involved in triggering the allosteric response of the Escherichia coli ADP-glucose pyrophosphorylase : Allosteric Signaling Hill, Benjamin L.; Wong, Jennifer; May, Brian M. Protein Science, Vol. 24, Issue 5 https://doi.org/10.1002/pro.2644	journal	March 2015
UCSF Chimera?A visualization system for exploratory research and analysis Pettersen, Eric F.; Goddard, Thomas D.; Huang, Conrad C. Journal of Computational Chemistry, Vol. 25, Issue 13 https://doi.org/10.1002/jcc.20084	journal	January 2004
Mapping of a Regulatory Site of the Escherichia coli ADP-Glucose Pyrophosphorylase Bhayani, Jaina A.; Hill, Benjamin L.; Sharma, Anisha Frontiers in Molecular Biosciences, Vol. 6 https://doi.org/10.3389/fmolb.2019.00089	journal	September 2019
xia2 : an expert system for macromolecular crystallography data reduction Winter, G. Journal of Applied Crystallography, Vol. 43, Issue 1 https://doi.org/10.1107/S0021889809045701	journal	December 2009
Polder maps: improving OMIT maps by excluding bulk solvent Liebschner, Dorothee; Afonine, Pavel V.; Moriarty, Nigel W. Acta Crystallographica Section D Structural Biology, Vol. 73, Issue 2, p. 148-157 https://doi.org/10.1107/S2059798316018210	journal	February 2017
How good are my data and what is the resolution? Evans, Philip R.; Murshudov, Garib N. Acta Crystallographica Section D Biological Crystallography, Vol. 69, Issue 7 https://doi.org/10.1107/S0907444913000061	journal	June 2013
Unraveling the Activation Mechanism of the Potato Tuber ADP-Glucose Pyrophosphorylase Figueroa, Carlos M.; Kuhn, Misty L.; Falaschetti, Christine A. PLoS ONE, Vol. 8, Issue 6 https://doi.org/10.1371/journal.pone.0066824	journal	June 2013
Identification of Functionally Important Amino-Terminal Arginines of Agrobacterium tumefaciens ADP-Glucose Pyrophosphorylase by Alanine Scanning Mutagenesis ^† Gómez-Casati, Diego F.; Igarashi, Robert Y.; Berger, Christopher N. Biochemistry, Vol. 40, Issue 34 https://doi.org/10.1021/bi002615e	journal	August 2001
The ADP-glucose pyrophosphorylase from Escherichia coli comprises two tightly bound distinct domains Bejar, Clarisa M.; Ballicora, Miguel A.; Gómez-Casati, Diego F. FEBS Letters, Vol. 573, Issue 1-3 https://doi.org/10.1016/j.febslet.2004.07.060	journal	August 2004
Thermofluor-based high-throughput stability optimization of proteins for structural studies Ericsson, Ulrika B.; Hallberg, B. Martin; DeTitta, George T. Analytical Biochemistry, Vol. 357, Issue 2 https://doi.org/10.1016/j.ab.2006.07.027	journal	October 2006
A Kinetic Study of Site-Directed Mutants ofEscherichia coliADP-Glucose Pyrophosphorylase: The Role of Residue 295 in Allosteric Regulation Meyer, Christopher R.; Yirsa, Jennifer; Gott, Bruce Archives of Biochemistry and Biophysics, Vol. 352, Issue 2 https://doi.org/10.1006/abbi.1998.0593	journal	April 1998
Regeneration and molecular characterization of intergeneric somatic hybrids between Citrus reticulata and Poncirus trifoliata Guo, W.; Cheng, Y.; Deng, X. Plant Cell Reports, Vol. 20, Issue 9 https://doi.org/10.1007/s00299-001-0399-7	journal	February 2002
Structural Basis of Glycogen Biosynthesis Regulation in Bacteria Cifuente, Javier O.; Comino, Natalia; Madariaga-Marcos, Julene Structure, Vol. 24, Issue 9 https://doi.org/10.1016/j.str.2016.06.023	journal	September 2016
Site-Directed Mutagenesis of a Regulatory Site ofEscherichia coliADP-Glucose Pyrophosphorylase: The Role of Residue 336 in Allosteric Behavior Meyer, Christopher R.; Bork, Jennifer A.; Nadler, Sam Archives of Biochemistry and Biophysics, Vol. 353, Issue 1 https://doi.org/10.1006/abbi.1998.0648	journal	May 1998

Similar Records

Site-directed mutagenesis of Serine-72 reveals the location of the fructose 6-phosphate regulatory s

Journal Article · 2022 · Protein Sci. · OSTI ID:1876068

Characterization of phosphate binding in the active site of barnase by site-directed mutagenesis and NMR

Journal Article · 1991 · Biochemistry; (United States) · OSTI ID:5687178

Hexose phosphate binding sites of fructose-6-phosphate,2-kinase:fructose-2,6-bisphosphatase

Journal Article · 1984 · J. Biol. Chem.; (United States) · OSTI ID:5273101

Site-directed mutagenesis of Serine-72 reveals the location of the fructose 6-phosphate regulatory s

Citation Formats

References (43)

Similar Records

Related Subjects