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Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: results of a comprehensive survey
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journal
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May 2000 |
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Selection of high-affinity Centyrin FN3 domains from a simple library diversified at a combination of strand and loop positions
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journal
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April 2014 |
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On the physics of thermal-stability changes upon mutations of a protein
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journal
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September 2015 |
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Protein stability: computation, sequence statistics, and new experimental methods
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journal
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August 2015 |
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Energy Functions for Protein Design: Adjustment with Protein–Protein Complex Affinities, Models for the Unfolded State, and Negative Design of Solubility and Specificity
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journal
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March 2005 |
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I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure
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journal
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July 2005 |
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Protein Structure Prediction Using Rosetta
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book
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January 2004 |
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Examining the Feasibility of Using Free Energy Perturbation (FEP+) in Predicting Protein Stability
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journal
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June 2017 |
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Predicting resistance of clinical Abl mutations to targeted kinase inhibitors using alchemical free-energy calculations
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journal
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June 2018 |
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Features and development of Coot
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journal
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March 2010 |
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Folding and stability of a fibronectin type III domain of human tenascin
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journal
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Predicting free energy changes using structural ensembles
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journal
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Effect of ProNectin F derivatives on cell attachment and proliferation
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journal
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February 2013 |
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Applying Physics-Based Scoring to Calculate Free Energies of Binding for Single Amino Acid Mutations in Protein-Protein Complexes
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journal
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December 2013 |
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Principles of Protein Stability and Their Application in Computational Design
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journal
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June 2018 |
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Highly conserved salt bridge stabilizes a proteinase K subfamily enzyme, Aqualysin I, from Thermus aquaticus YT-1
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journal
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August 2014 |
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Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species
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journal
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March 1999 |
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Stabilizing Salt-Bridge Enhances Protein Thermostability by Reducing the Heat Capacity Change of Unfolding
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The stability of salt bridges at high temperatures: implications for hyperthermophilic proteins 1 1Edited by B. Honig
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Improved molecular replacement by density- and energy-guided protein structure optimization
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May 2011 |
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How do thermophilic proteins deal with heat?
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journal
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August 2001 |
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Protein Thermal Stability Enhancement by Designing Salt Bridges: A Combined Computational and Experimental Study
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journal
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The three-dimensional structure of the tenth type III module of fibronectin: An insight into RGD-mediated interactions
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journal
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Molecular dynamics---Scalable algorithms for molecular dynamics simulations on commodity clusters
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conference
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Thermo- and Mesostabilizing Protein Interactions Identified by Temperature-Dependent Statistical Potentials
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journal
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February 2010 |
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The fibronectin type III domain as a scaffold for novel binding proteins
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journal
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December 1998 |
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Relationship between Ion Pair Geometries and Electrostatic Strengths in Proteins
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journal
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September 2002 |
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Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments
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journal
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March 2013 |
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Stability of "salt bridges" in membrane proteins.
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journal
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September 1984 |
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Contribution of Salt Bridges Toward Protein Thermostability
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journal
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January 2000 |
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Voronoia: analyzing packing in protein structures
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journal
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January 2009 |
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Predicting the Effect of Amino Acid Single-Point Mutations on Protein Stability—Large-Scale Validation of MD-Based Relative Free Energy Calculations
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journal
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April 2017 |
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Design of novel FN3 domains with high stability by a consensus sequence approach
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journal
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January 2012 |
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OPLS3: A Force Field Providing Broad Coverage of Drug-like Small Molecules and Proteins
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journal
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December 2015 |
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Thermophilic proteins: insight and perspective from in silico experiments
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journal
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January 2012 |
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2.0 Å Crystal Structure of a Four-Domain Segment of Human Fibronectin Encompassing the RGD Loop and Synergy Region
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journal
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January 1996 |
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Free Energy Perturbation Calculation of Relative Binding Free Energy between Broadly Neutralizing Antibodies and the gp120 Glycoprotein of HIV-1
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journal
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VMD: Visual molecular dynamics
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journal
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February 1996 |
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Relative Binding Affinity Prediction of Charge-Changing Sequence Mutations with FEP in Protein–Protein Interfaces
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journal
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March 2019 |
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Protein Stability and Surface Electrostatics: A Charged Relationship †
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journal
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March 2006 |
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Structure- and sequence-analysis inspired engineering of proteins for enhanced thermostability
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journal
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August 2013 |
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Consensus protein design
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journal
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June 2016 |
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Protein structure prediction and analysis using the Robetta server
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journal
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July 2004 |
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Engineering proteins for thermostability through rigidifying flexible sites
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journal
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March 2014 |
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The role of salt bridges on the temperature adaptation of aqualysin I, a thermostable subtilisin-like proteinase
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journal
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December 2014 |
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Electrostatic contributions to the stability of hyperthermophilic proteins 1 1Edited by J. M. Thornton
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journal
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June 1999 |
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Ion pairs and the thermotolerance of proteins from hyperthermophiles: a ‘traffic rule’ for hot roads
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journal
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September 2001 |
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Contribution of main chain and side chain atoms and their locations to the stability of thermophilic proteins
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journal
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March 2016 |
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Non-immunoglobulin scaffolds: a focus on their targets
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journal
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July 2015 |
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XDS
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January 2010 |
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Estimating the contribution of engineered surface electrostatic interactions to protein stability by using double-mutant cycles
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journal
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Engineering proteins for thermostability the use of sequence alignments versus rational design and directed evolution
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journal
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Rational stabilization of enzymes by computational redesign of surface charge–charge interactions
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February 2009 |
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Salt Bridges in the Hyperthermophilic Protein Ssh10b Are Resilient to Temperature Increases
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journal
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November 2008 |
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Surface Salt Bridges, Double-Mutant Cycles, and Protein Stability: an Experimental and Computational Analysis of the Interaction of the Asp 23 Side Chain with the N-Terminus of the N-Terminal Domain of the Ribosomal Protein L9
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journal
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May 2003 |
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MolProbity: all-atom contacts and structure validation for proteins and nucleic acids
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journal
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May 2007 |
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Protein homology detection by HMM-HMM comparison
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November 2004 |
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Consensus-Based Engineering of Protein Stability: From Intrabodies to Thermostable Enzymes
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book
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Improving the Accuracy of Protein Thermostability Predictions for Single Point Mutations
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journal
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July 2020 |
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Molecular Simulations Suggest Protein Salt Bridges Are Uniquely Suited to Life at High Temperatures
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journal
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January 2004 |
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Structure of a fibronectin type III domain from tenascin phased by MAD analysis of the selenomethionyl protein
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journal
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November 1992 |
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Knottins: disulfide-bonded therapeutic and diagnostic peptides
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journal
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April 2012 |
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Recent developments in the PHENIX software for automated crystallographic structure determination
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Adnectins: engineered target-binding protein therapeutics
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November 2010 |
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Toward the Physical Basis of Thermophilic Proteins: Linking of Enriched Polar Interactions and Reduced Heat Capacity of Unfolding
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journal
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December 2002 |