T cells discriminate between groups C1 and C2 HLA-C

Sim, Malcolm J.W.; Stotz, Zachary; Lu, Jinghua; Brennan, Paul; Long, Eric O.; Sun, Peter D.

doi:10.7554/eLife.75670

T cells discriminate between groups C1 and C2 HLA-C

Journal Article · 01 May 2022 · eLife

DOI:https://doi.org/10.7554/eLife.75670· OSTI ID:1877202

Sim, Malcolm J.W.; Stotz, Zachary; Lu, Jinghua; Brennan, Paul; Long, Eric O.; Sun, Peter D.

Research Organization:: Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)

Sponsoring Organization:: DOE - Office Of Science; NIAID

OSTI ID:: 1877202

Journal Information:: eLife, Vol. 11; ISSN 2050-084X

Publisher:: eLife Sciences Publications, Ltd.

Country of Publication:: United States

Language:: ENGLISH

References (57)

Species-specific evolution of MHC class I genes in the higher primates: Species-specific MHC class I evolution Adams, Erin J.; Parham, Peter Immunological Reviews, Vol. 183, Issue 1 https://doi.org/10.1034/j.1600-065x.2001.1830104.x	journal	October 2001
PHENIX : building new software for automated crystallographic structure determination Adams, Paul D.; Grosse-Kunstleve, Ralf W.; Hung, Li-Wei Acta Crystallographica Section D Biological Crystallography, Vol. 58, Issue 11 https://doi.org/10.1107/s0907444902016657	journal	October 2002
The HIV-1 regulatory proteins Tat and Rev are frequently targeted by cytotoxic T lymphocytes derived from HIV-1-infected individuals Addo, M. M.; Altfeld, M.; Rosenberg, E. S. Proceedings of the National Academy of Sciences, Vol. 98, Issue 4 https://doi.org/10.1073/pnas.98.4.1781	journal	February 2001
Influence of HLA-C Expression Level on HIV Control Apps, Richard; Qi, Ying; Carlson, Jonathan M. Science, Vol. 340, Issue 6128 https://doi.org/10.1126/science.1232685	journal	April 2013
Relative Expression Levels of the HLA Class-I Proteins in Normal and HIV-Infected Cells Apps, Richard; Meng, Zhaojing; Del Prete, Gregory Q. The Journal of Immunology, Vol. 194, Issue 8 https://doi.org/10.4049/jimmunol.1403234	journal	March 2015
Rational discovery of a cancer neoepitope harboring the KRAS G12D driver mutation Bai, Peng; Zhou, Qiuping; Wei, Pengcheng Science China Life Sciences, Vol. 64, Issue 12 https://doi.org/10.1007/s11427-020-1888-1	journal	March 2021
Amino acid substitutions can influence the natural killer (NK)-mediated recognition of HLA-C molecules. Role of serine-77 and lysine-80 in the target cell protection from lysis mediated by "group 2" or "group 1" NK clones. Biassoni, R.; Falco, M.; Cambiaggi, A. Journal of Experimental Medicine, Vol. 182, Issue 2 https://doi.org/10.1084/jem.182.2.605	journal	August 1995
Crystal structure of an NK cell immunoglobulin-like receptor in complex with its class I MHC ligand Boyington, Jeffrey C.; Motyka, Shawn A.; Schuck, Peter Nature, Vol. 405, Issue 6786 https://doi.org/10.1038/35014520	journal	June 2000
HLA ‐Cw6 and psoriasis Chen, L.; Tsai, T. ‐F. British Journal of Dermatology, Vol. 178, Issue 4 https://doi.org/10.1111/bjd.16083	journal	March 2018
The CCP4 suite programs for protein crystallography No authors listed Acta Crystallographica Section D Biological Crystallography, Vol. 50, Issue 5, p. 760-763 https://doi.org/10.1107/S0907444994003112	journal	September 1994
Drugging the undruggable RAS: Mission Possible? Cox, Adrienne D.; Fesik, Stephen W.; Kimmelman, Alec C. Nature Reviews Drug Discovery, Vol. 13, Issue 11 https://doi.org/10.1038/nrd4389	journal	October 2014
Identifying the immune interactions underlying HLA class I disease associations Debebe, Bisrat J.; Boelen, Lies; Lee, James C. eLife, Vol. 9 https://doi.org/10.7554/eLife.54558	journal	April 2020
HLA variation and disease Dendrou, Calliope A.; Petersen, Jan; Rossjohn, Jamie Nature Reviews Immunology, Vol. 18, Issue 5 https://doi.org/10.1038/nri.2017.143	journal	January 2018
Structural dissimilarity from self drives neoepitope escape from immune tolerance Devlin, Jason R.; Alonso, Jesus A.; Ayres, Cory M. Nature Chemical Biology, Vol. 16, Issue 11 https://doi.org/10.1038/s41589-020-0610-1	journal	August 2020
Unveiling the Peptide Motifs of HLA-C and HLA-G from Naturally Presented Peptides and Generation of Binding Prediction Matrices Di Marco, Moreno; Schuster, Heiko; Backert, Linus The Journal of Immunology, Vol. 199, Issue 8 https://doi.org/10.4049/jimmunol.1700938	journal	September 2017
Tuning antiviral CD8 T-cell response via proline-altered peptide ligand vaccination Duru, Adil Doganay; Sun, Renhua; Allerbring, Eva B. PLOS Pathogens, Vol. 16, Issue 5 https://doi.org/10.1371/journal.ppat.1008244	journal	May 2020
Coot model-building tools for molecular graphics Emsley, Paul; Cowtan, Kevin Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 12, p. 2126-2132 https://doi.org/10.1107/S0907444904019158	journal	November 2004
Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules Falk, Kirsten; Rötzschke, Olaf; Stevanovié, Stefan Nature, Vol. 351, Issue 6324 https://doi.org/10.1038/351290a0	journal	May 1991
Crystal structure of the human natural killer cell inhibitory receptor KIR2DL1–HLA-Cw4 complex Fan, Qing R.; Long, Eric O.; Wiley, Don C. Nature Immunology, Vol. 2, Issue 5 https://doi.org/10.1038/87766	journal	May 2001
HLA-A2-peptide complexes: refolding and crystallization of molecules expressed in Escherichia coli and complexed with single antigenic peptides. Garboczi, D. N.; Hung, D. T.; Wiley, D. C. Proceedings of the National Academy of Sciences, Vol. 89, Issue 8 https://doi.org/10.1073/pnas.89.8.3429	journal	April 1992
Combinations of Maternal KIR and Fetal HLA-C Genes Influence the Risk of Preeclampsia and Reproductive Success Hiby, Susan E.; Walker, James J.; O'Shaughnessy, Kevin M. Journal of Experimental Medicine, Vol. 200, Issue 8 https://doi.org/10.1084/jem.20041214	journal	October 2004
Missing or altered self: human NK cell receptors that recognize HLA-C Hilton, Hugo G.; Parham, Peter Immunogenetics, Vol. 69, Issue 8-9 https://doi.org/10.1007/s00251-017-1001-y	journal	July 2017
Immune self-reactivity triggered by drug-modified HLA-peptide repertoire Illing, Patricia T.; Vivian, Julian P.; Dudek, Nadine L. Nature, Vol. 486, Issue 7404 https://doi.org/10.1038/nature11147	journal	May 2012
HLA-B57 micropolymorphism defines the sequence and conformational breadth of the immunopeptidome Illing, Patricia T.; Pymm, Phillip; Croft, Nathan P. Nature Communications, Vol. 9, Issue 1 https://doi.org/10.1038/s41467-018-07109-w	journal	November 2018
Comparative immunopeptidomics of humans and their pathogens Istrail, Sorin; Florea, Liliana; Halldórsson, Bjarni V. Proceedings of the National Academy of Sciences, Vol. 101, Issue 36 https://doi.org/10.1073/pnas.0404740101	journal	August 2004
HLA and NK Cell Inhibitory Receptor Genes in Resolving Hepatitis C Virus Infection Khakoo, Salim I.; Thio, Chloe L.; Martin, Maureen P. Science, Vol. 305, Issue 5685 https://doi.org/10.1126/science.1097670	journal	August 2004
Surface Expression of HLA-C Antigen by Human Extravillous Trophoblast King, A.; Burrows, T. D.; Hiby, S. E. Placenta, Vol. 21, Issue 4 https://doi.org/10.1053/plac.1999.0496	journal	May 2000
The Yin and Yang of HLA and KIR in human disease Kulkarni, Smita; Martin, Maureen P.; Carrington, Mary Seminars in Immunology, Vol. 20, Issue 6 https://doi.org/10.1016/j.smim.2008.06.003	journal	December 2008
The antimicrobial peptide LL37 is a T-cell autoantigen in psoriasis Lande, Roberto; Botti, Elisabetta; Jandus, Camilla Nature Communications, Vol. 5, Issue 1 https://doi.org/10.1038/ncomms6621	journal	December 2014
Identification and Validation of T-cell Receptors Targeting RAS Hotspot Mutations in Human Cancers for Use in Cell-based Immunotherapy Levin, Noam; Paria, Biman C.; Vale, Nolan R. Clinical Cancer Research, Vol. 27, Issue 18 https://doi.org/10.1158/1078-0432.CCR-21-0849	journal	June 2021
Exploring the Role of Killer Cell Immunoglobulin-Like Receptors and Their HLA Class I Ligands in Autoimmune Hepatitis Littera, Roberto; Chessa, Luchino; Onali, Simona PLOS ONE, Vol. 11, Issue 1 https://doi.org/10.1371/journal.pone.0146086	journal	January 2016
Efficient Identification of Mutated Cancer Antigens Recognized by T Cells Associated with Durable Tumor Regressions Lu, Yong-Chen; Yao, Xin; Crystal, Jessica S. Clinical Cancer Research, Vol. 20, Issue 13 https://doi.org/10.1158/1078-0432.CCR-14-0433	journal	June 2014
The Three-Dimensional Structure of Peptide-MHC Complexes Madden, Dean R. Annual Review of Immunology, Vol. 13, Issue 1 https://doi.org/10.1146/annurev.iy.13.040195.003103	journal	April 1995
Phaser crystallographic software McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D. Journal of Applied Crystallography, Vol. 40, Issue 4 https://doi.org/10.1107/S0021889807021206	journal	July 2007
Low HLA-C expression at cell surfaces correlates with increased turnover of heavy chain mRNA. McCutcheon, J. A.; Gumperz, J.; Smith, K. D. Journal of Experimental Medicine, Vol. 181, Issue 6 https://doi.org/10.1084/jem.181.6.2085	journal	June 1995
Synergistic Polymorphism at Two Positions Distal to the Ligand-Binding Site Makes KIR2DL2 a Stronger Receptor for HLA-C Than KIR2DL3 Moesta, Achim K.; Norman, Paul J.; Yawata, Makoto The Journal of Immunology, Vol. 180, Issue 6 https://doi.org/10.4049/jimmunol.180.6.3969	journal	March 2008
Landscape mapping of shared antigenic epitopes and their cognate TCRs of tumor-infiltrating T lymphocytes in melanoma Murata, Kenji; Nakatsugawa, Munehide; Rahman, Muhammed A. eLife, Vol. 9 https://doi.org/10.7554/eLife.53244	journal	April 2020
[20] Processing of X-ray diffraction data collected in oscillation mode Otwinowski, Zbyszek; Minor, Wladek Macromolecular Crystallography Part A, 307-326 https://doi.org/10.1016/S0076-6879(97)76066-X	book	January 1997
Human-specific evolution of killer cell immunoglobulin-like receptor recognition of major histocompatibility complex class I molecules Parham, Peter; Norman, Paul J.; Abi-Rached, Laurent Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 367, Issue 1590 https://doi.org/10.1098/rstb.2011.0266	journal	March 2012
Variable NK cell receptors and their MHC class I ligands in immunity, reproduction and human evolution Parham, Peter; Moffett, Ashley Nature Reviews Immunology, Vol. 13, Issue 2 https://doi.org/10.1038/nri3370	journal	January 2013
Targeting public neoantigens for cancer immunotherapy Pearlman, Alexander H.; Hwang, Michael S.; Konig, Maximilian F. Nature Cancer, Vol. 2, Issue 5 https://doi.org/10.1038/s43018-021-00210-y	journal	May 2021
Understanding how combinations of HLA and KIR genes influence disease Rajagopalan, Sumati; Long, Eric O. Journal of Experimental Medicine, Vol. 201, Issue 7 https://doi.org/10.1084/jem.20050499	journal	April 2005
Distinguishing functional polymorphism from random variation in the sequences of >10,000 HLA-A, -B and -C alleles Robinson, James; Guethlein, Lisbeth A.; Cereb, Nezih PLOS Genetics, Vol. 13, Issue 6 https://doi.org/10.1371/journal.pgen.1006862	journal	June 2017
A large peptidome dataset improves HLA class I epitope prediction across most of the human population Sarkizova, Siranush; Klaeger, Susan; Le, Phuong M. Nature Biotechnology, Vol. 38, Issue 2 https://doi.org/10.1038/s41587-019-0322-9	journal	December 2019
A bird's eye view of NK cell receptor interactions with their MHC class I ligands Saunders, Philippa M.; Vivian, Julian P.; O'Connor, Geraldine M. Immunological Reviews, Vol. 267, Issue 1 https://doi.org/10.1111/imr.12319	journal	August 2015
The molecular basis of how buried human leukocyte antigen polymorphism modulates natural killer cell function Saunders, Philippa M.; MacLachlan, Bruce J.; Pymm, Phillip Proceedings of the National Academy of Sciences, Vol. 117, Issue 21 https://doi.org/10.1073/pnas.1920570117	journal	May 2020
Canonical and Cross-reactive Binding of NK Cell Inhibitory Receptors to HLA-C Allotypes Is Dictated by Peptides Bound to HLA-C Sim, Malcolm J. W.; Malaker, Stacy A.; Khan, Ayesha Frontiers in Immunology, Vol. 8 https://doi.org/10.3389/fimmu.2017.00193	journal	March 2017
Human NK cell receptor KIR2DS4 detects a conserved bacterial epitope presented by HLA-C Sim, Malcolm J. W.; Rajagopalan, Sumati; Altmann, Daniel M. Proceedings of the National Academy of Sciences, Vol. 116, Issue 26 https://doi.org/10.1073/pnas.1903781116	journal	May 2019
High-affinity oligoclonal TCRs define effective adoptive T cell therapy targeting mutant KRAS-G12D Sim, Malcolm J. W.; Lu, Jinghua; Spencer, Matthew Proceedings of the National Academy of Sciences, Vol. 117, Issue 23 https://doi.org/10.1073/pnas.1921964117	journal	May 2020
Dragging Ras Back in the Ring Stephen, Andrew G.; Esposito, Dominic; Bagni, Rachel K. Cancer Cell, Vol. 25, Issue 3 https://doi.org/10.1016/j.ccr.2014.02.017	journal	March 2014
Structural features underlying T-cell receptor sensitivity to concealed MHC class I micropolymorphisms Stewart-Jones, Guillaume B.; Simpson, Peter; Anton van der Merwe, P. Proceedings of the National Academy of Sciences, Vol. 109, Issue 50 https://doi.org/10.1073/pnas.1207896109	journal	November 2012
αβ T Cell Receptors that Do Not Undergo Major Histocompatibility Complex-Specific Thymic Selection Possess Antibody-like Recognition Specificities Tikhonova, Anastasia N.; Van Laethem, François; Hanada, Ken-ichi Immunity, Vol. 36, Issue 1 https://doi.org/10.1016/j.immuni.2011.11.013	journal	January 2012
Immunogenicity of somatic mutations in human gastrointestinal cancers Tran, E.; Ahmadzadeh, M.; Lu, Y. -C. Science, Vol. 350, Issue 6266 https://doi.org/10.1126/science.aad1253	journal	October 2015
T-Cell Transfer Therapy Targeting Mutant KRAS in Cancer Tran, Eric; Robbins, Paul F.; Lu, Yong-Chen New England Journal of Medicine, Vol. 375, Issue 23 https://doi.org/10.1056/NEJMoa1609279	journal	December 2016
The immunogenicity of a viral cytotoxic T cell epitope is controlled by its MHC-bound conformation Tynan, Fleur E.; Elhassen, Diah; Purcell, Anthony W. Journal of Experimental Medicine, Vol. 202, Issue 9 https://doi.org/10.1084/jem.20050864	journal	November 2005
HLA-C –Dependent Prevention of Leukemia Relapse by Donor Activating KIR2DS1 Venstrom, Jeffrey M.; Pittari, Gianfranco; Gooley, Ted A. New England Journal of Medicine, Vol. 367, Issue 9 https://doi.org/10.1056/NEJMoa1200503	journal	August 2012
A single amino acid in the p58 killer cell inhibitory receptor controls the ability of natural killer cells to discriminate between the two groups of HLA-C allotypes. Winter, C. C.; Long, E. O. The Journal of Immunology, Vol. 158, Issue 9 https://doi.org/10.4049/jimmunol.158.9.4026	journal	May 1997

Similar Records

T cells discriminate between groups C1 and C2 HLA-C

Journal Article · 2022 · eLife · OSTI ID:1871608

Sim, Malcolm J. W.; Stotz, Zachary; Lu, Jinghua; +3 more

Structures of MART-126/27–35 Peptide/HLA-A2 Complexes Reveal a Remarkable Disconnect between Antigen Structural Homology and T Cell Recognition

Journal Article · 2007 · Journal of Molecular Biology · OSTI ID:1485623

Borbulevych, Oleg Y.; Insaidoo, Francis K.; Baxter, Tiffany K.; +4 more

T cells discriminate between groups C1 and C2 HLA-C

Citation Formats

References (57)

Similar Records

Related Subjects