Dominant forces in protein folding
|
journal
|
August 1990 |
Critical assessment of methods of protein structure prediction (CASP)—Round XIV
|
journal
|
October 2021 |
Improved protein structure prediction using potentials from deep learning
|
journal
|
January 2020 |
The Protein Folding Problem: The Role of Theory
|
journal
|
October 2021 |
Accessing protein conformational ensembles using room-temperature X-ray crystallography
|
journal
|
September 2011 |
Unveiling invisible protein states with NMR spectroscopy
|
journal
|
February 2020 |
The Protein-Folding Problem, 50 Years On
|
journal
|
November 2012 |
Cold Denaturation of Protein
|
journal
|
January 1990 |
Navigating the folding routes
|
journal
|
March 1995 |
Behind the folding funnel diagram
|
journal
|
June 2011 |
The hydrophobic effect and its role in cold denaturation
|
journal
|
February 2010 |
Theory of cold denaturation of proteins
|
journal
|
January 2013 |
Water–protein dynamic coupling and new opportunities for probing it at low to physiological temperatures in aqueous solutions
|
journal
|
January 2012 |
Water Determines the Structure and Dynamics of Proteins
|
journal
|
April 2016 |
Water Mediation in Protein Folding and Molecular Recognition
|
journal
|
June 2006 |
On the cooperative formation of non-hydrogen-bonded water at molecular hydrophobic interfaces
|
journal
|
July 2013 |
Dynamic hydration shell restores Kauzmann's 1959 explanation of how the hydrophobic factor drives protein folding
|
journal
|
August 2014 |
Towards a structural biology of the hydrophobic effect in protein folding
|
journal
|
July 2016 |
The new view of hydrophobic free energy
|
journal
|
January 2013 |
Hydrophobic-hydrophilic forces in protein folding
|
journal
|
June 2017 |
Cooperative Thermal Denaturation of Proteins Designed by Binary Patterning of Polar and Nonpolar Amino Acids
|
journal
|
March 2000 |
How cooperative are protein folding and unfolding transitions?: Cooperativity in Protein Folding/Unfolding Reactions
|
journal
|
September 2016 |
Limited cooperativity in protein folding
|
journal
|
February 2016 |
Low-populated folding intermediates of Fyn SH3 characterized by relaxation dispersion NMR
|
journal
|
July 2004 |
An 15 N NMR Spin Relaxation Dispersion Study of the Folding of a Pair of Engineered Mutants of Apocytochrome b 562
|
journal
|
March 2005 |
Abp1p and Fyn SH3 Domains Fold through Similar Low-Populated Intermediate States
|
journal
|
August 2006 |
Probing the Residual Structure of the Low Populated Denatured State of ADA2h under Folding Conditions by Relaxation Dispersion Nuclear Magnetic Resonance Spectroscopy
|
journal
|
July 2015 |
Protein folding by NMR
|
journal
|
May 2017 |
Converging concepts of protein folding in vitro and in vivo
|
journal
|
June 2009 |
NMR spectroscopy of hydroxyl protons in supercooled carbohydrates
|
journal
|
April 1994 |
Toward Structural Biology in Supercooled Water
|
journal
|
April 2000 |
Aromatic Ring-Flipping in Supercooled Water: Implications for NMR-Based Structural Biology of Proteins
|
journal
|
December 2000 |
Combined NMR-observation of cold denaturation in supercooled water and heat denaturation enables accurate measurement of ΔC p of protein unfolding
|
journal
|
October 2005 |
NMR-based structural biology of proteins in supercooled water
|
journal
|
March 2011 |
Cold denaturation of a protein dimer monitored at atomic resolution
|
journal
|
February 2013 |
The Cold Denatured State Is Compact but Expands at Low Temperatures: Hydrodynamic Properties of the Cold Denatured State of the C-terminal Domain of L9
|
journal
|
April 2007 |
Unbiased Cold Denaturation: Low- and High-Temperature Unfolding of Yeast Frataxin under Physiological Conditions
|
journal
|
April 2007 |
The Complex Energy Landscape of the Protein IscU
|
journal
|
September 2015 |
The Cold Denatured State of the C-terminal Domain of Protein L9 Is Compact and Contains Both Native and Non-native Structure
|
journal
|
March 2010 |
Cooperative Cold Denaturation: The Case of the C-Terminal Domain of Ribosomal Protein L9
|
journal
|
March 2013 |
The Unfolded State of the C-Terminal Domain of L9 Expands at Low but Not at Elevated Temperatures
|
journal
|
August 2018 |
The Cold-Unfolded State Is Expanded but Contains Long- and Medium-Range Contacts and Is Poorly Described by Homopolymer Models
|
journal
|
July 2020 |
Understanding Cold Denaturation: The Case Study of Yfh1
|
journal
|
October 2010 |
The Role of Hydration in Protein Stability: Comparison of the Cold and Heat Unfolded States of Yfh1
|
journal
|
April 2012 |
Yeast Frataxin Is Stabilized by Low Salt Concentrations: Cold Denaturation Disentangles Ionic Strength Effects from Specific Interactions
|
journal
|
May 2014 |
Cold Denaturation of the HIV-1 Protease Monomer
|
journal
|
February 2017 |
Macromolecular modeling and design in Rosetta: recent methods and frameworks
|
journal
|
June 2020 |
Increasing Sequence Diversity with Flexible Backbone Protein Design: The Complete Redesign of a Protein Hydrophobic Core
|
journal
|
June 2012 |
Rapid Sampling of Hydrogen Bond Networks for Computational Protein Design
|
journal
|
March 2018 |
Psychrophilic Enzymes: From Folding to Function and Biotechnology
|
journal
|
January 2013 |
Perturbing the energy landscape for improved packing during computational protein design
|
journal
|
December 2020 |
The “cold revolution”. Present and future applications of cold-active enzymes and ice-binding proteins
|
journal
|
March 2020 |
Native protein sequences are close to optimal for their structures
|
journal
|
September 2000 |
De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity
|
journal
|
May 2016 |
Combined Covalent-Electrostatic Model of Hydrogen Bonding Improves Structure Prediction with Rosetta
|
journal
|
January 2015 |
GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
|
journal
|
September 2015 |
Vapor-liquid equilibria from the triple point up to the critical point for the new generation of TIP4P-like models: TIP4P/Ew, TIP4P/2005, and TIP4P/ice
|
journal
|
July 2006 |
Computational investigation of cold denaturation in the Trp-cage miniprotein
|
journal
|
July 2016 |
Canonical sampling through velocity rescaling
|
journal
|
January 2007 |
Polymorphic transitions in single crystals: A new molecular dynamics method
|
journal
|
December 1981 |
VMD: Visual molecular dynamics
|
journal
|
February 1996 |
[20] Processing of X-ray diffraction data collected in oscillation mode
|
book
|
January 1997 |
A1H-NMR thermometer suitable for cryoprobes
|
journal
|
January 2007 |
Biological small-angle X-ray scattering facility at the Stanford Synchrotron Radiation Laboratory
|
journal
|
April 2007 |
ATSAS 3.0 : expanded functionality and new tools for small-angle scattering data analysis
|
journal
|
February 2021 |
Global analysis of the thermal and chemical denaturation of the N-terminal domain of the ribosomal protein L9 in H 2 O and D 2 O. Determination of the thermodynamic parameters, Δ H °, Δ S °, and Δ C ° p , and evaluation of solvent isotope effects
|
journal
|
November 1998 |
Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water
|
journal
|
April 1992 |
HullRad: Fast Calculations of Folded and Disordered Protein and Nucleic Acid Hydrodynamic Properties
|
journal
|
February 2018 |
Statistical survey of the buried waters in the Protein Data Bank
|
journal
|
August 2015 |
Structure and Function of Water Molecules Buried in the Protein Core
|
journal
|
March 2015 |
Hyperbolic Pressure–Temperature Phase Diagram of the Zinc-Finger Protein apoKti11 Detected by NMR Spectroscopy
|
journal
|
January 2019 |
Accurate secondary structure prediction and fold recognition for circular dichroism spectroscopy
|
journal
|
June 2015 |
BeStSel: a web server for accurate protein secondary structure prediction and fold recognition from the circular dichroism spectra
|
journal
|
June 2018 |
An exceptionally stable helix from the ribosomal protein L9: implications for protein folding and stability
|
journal
|
August 1997 |
Temperature Dependence of the Thermodynamics of Helix–Coil Transition
|
journal
|
January 2004 |
The Use of Circular Dichroism in the Investigation of Protein Structure and Function
|
journal
|
December 2000 |
Tyrosine, Phenylalanine, and Disulfide Contributions to the Circular Dichroism of Proteins: Circular Dichroism Spectra of Wild-Type and Mutant Bovine Pancreatic Trypsin Inhibitor
|
journal
|
July 1999 |
Mechanisms of Tryptophan Fluorescence Shifts in Proteins
|
journal
|
May 2001 |
Simulating electrostatic effects on electronic transitions in proteins
|
journal
|
June 2014 |
The temperature properties of human α2-macroglobulin in the range −15 to +37°C. An investigation of supercooled solutions using small-angle X-ray scattering and dilatometry
|
journal
|
August 1985 |
An Antifreeze Protein Folds with an Interior Network of More Than 400 Semi-Clathrate Waters
|
journal
|
February 2014 |
Accurate assessment of mass, models and resolution by small-angle scattering
|
journal
|
April 2013 |
Diffusion ordered nuclear magnetic resonance spectroscopy: principles and applications
|
journal
|
May 1999 |
HYDRONMR: Prediction of NMR Relaxation of Globular Proteins from Atomic-Level Structures and Hydrodynamic Calculations
|
journal
|
November 2000 |
Hydrodynamic Radii of Native and Denatured Proteins Measured by Pulse Field Gradient NMR Techniques †
|
journal
|
December 1999 |
Heat capacity of proteins
|
journal
|
May 1990 |
Cooperative protein unfolding. A statistical-mechanical model for the action of denaturants
|
journal
|
February 2018 |
α-Helix stability in proteins
|
journal
|
September 1992 |
α-helix stabilization by alanine relative to glycine: Roles of polar and apolar solvent exposures and of backbone entropy
|
journal
|
June 2006 |
A Helix Propensity Scale Based on Experimental Studies of Peptides and Proteins
|
journal
|
July 1998 |
An optimized strategy to measure protein stability highlights differences between cold and hot unfolded states
|
journal
|
May 2017 |
Protein folding ‐ seeing is deceiving
|
journal
|
May 2021 |
Supercooled Water
|
journal
|
October 1983 |
Cold Denaturation Unveiled: Molecular Mechanism of the Asymmetric Unfolding of Yeast Frataxin
|
journal
|
October 2015 |
Non-linear rate-equilibrium free energy relationships and Hammond behavior in protein folding
|
journal
|
December 2002 |
Contact order, transition state placement and the refolding rates of single domain proteins 1 1Edited by P. E. Wright
|
journal
|
April 1998 |
Room Temperature X-Ray Crystallography Reveals Conformational Heterogeneity of Engineered Proteins
|
journal
|
May 2017 |
Protein Conformational Space Populated in Solution Probed with Aromatic Residual Dipolar 13 C- 1 H Couplings
|
journal
|
March 2013 |
Role of Hydrophobic Hydration in Protein Stability: A 3D Water-Explicit Protein Model Exhibiting Cold and Heat Denaturation
|
journal
|
July 2012 |
Protein Cold Denaturation in Implicit Solvent Simulations: A Transfer Free Energy Approach
|
journal
|
May 2021 |
Cold Denaturation of α-Synuclein Amyloid Fibrils
|
journal
|
June 2014 |
Cold sensitivity of the SARS-CoV-2 spike ectodomain
|
journal
|
January 2021 |
D614G mutation in the SARS-CoV-2 spike protein enhances viral fitness by desensitizing it to temperature-dependent denaturation
|
journal
|
October 2021 |
Psychrophiles: A journey of hope
|
journal
|
June 2021 |