The Disordered Amino Terminus of the Circadian Enzyme Nocturnin Modulates Its NADP(H) Phosphatase Ac

Wickramaratne, AnushkacC.; Li, Li; Hopkins, Jesse B.; Joachimiak, Lukasz A.; Green, Carla B.

doi:10.1021/acs.biochem.2c00072

The Disordered Amino Terminus of the Circadian Enzyme Nocturnin Modulates Its NADP(H) Phosphatase Ac

Journal Article · 01 May 2022 · Biochemistry-US

DOI:https://doi.org/10.1021/acs.biochem.2c00072· OSTI ID:1872632

Wickramaratne, AnushkacC.; Li, Li; Hopkins, Jesse B.; Joachimiak, Lukasz A.; Green, Carla B.

Research Organization:: Advanced Photon Source (APS), Argonne National Laboratory (ANL), Argonne, IL (US)

Sponsoring Organization:: DOE - Office Of Science; NIH

OSTI ID:: 1872632

Journal Information:: Biochemistry-US, Journal Name: Biochemistry-US Journal Issue: (11) Vol. 61

Country of Publication:: United States

Language:: ENGLISH

References (46)

Nocturnin, a Deadenylase in Xenopus laevis Retina Baggs, Julie E.; Green, Carla B. Current Biology, Vol. 13, Issue 3 https://doi.org/10.1016/S0960-9822(03)00014-9	journal	February 2003
Machine Learning Methods for X-Ray Scattering Data Analysis from Biomacromolecular Solutions Franke, Daniel; Jeffries, Cy M.; Svergun, Dmitri I. Biophysical Journal, Vol. 114, Issue 11 https://doi.org/10.1016/j.bpj.2018.04.018	journal	June 2018
Spontaneous Assembly of Photosynthetic Supramolecular Complexes as Mediated by the Intrinsically Unstructured Protein CP12 Marri, Lucia; Trost, Paolo; Trivelli, Xavier Journal of Biological Chemistry, Vol. 283, Issue 4 https://doi.org/10.1074/jbc.M705650200	journal	January 2008
Phosphorylated CREB binds specifically to the nuclear protein CBP Chrivia, John C.; Kwok, Roland P. S.; Lamb, Ned Nature, Vol. 365, Issue 6449 https://doi.org/10.1038/365855a0	journal	October 1993
The metabolites NADP+ and NADPH are the targets of the circadian protein Nocturnin (Curled) Estrella, Michael A.; Du, Jin; Chen, Li Nature Communications, Vol. 10, Issue 1 https://doi.org/10.1038/s41467-019-10125-z	journal	May 2019
The structure of human Nocturnin reveals a conserved ribonuclease domain that represses target transcript translation and abundance in cells Abshire, Elizabeth T.; Chasseur, Jennifer; Bohn, Jennifer A. Nucleic Acids Research, Vol. 46, Issue 12 https://doi.org/10.1093/nar/gky412	journal	June 2018
A novel mouse model overexpressing Nocturnin results in decreased fat mass in male mice Le, Phuong T.; Bornstein, Sheila A.; Motyl, Katherine J. Journal of Cellular Physiology, Vol. 234, Issue 11 https://doi.org/10.1002/jcp.28623	journal	April 2019
Loss of Nocturnin, a circadian deadenylase, confers resistance to hepatic steatosis and diet-induced obesity Green, C. B.; Douris, N.; Kojima, S. Proceedings of the National Academy of Sciences, Vol. 104, Issue 23 https://doi.org/10.1073/pnas.0702448104	journal	May 2007
Toward a quantitative theory of intrinsically disordered proteins and their function Liu, Jintao; Faeder, James R.; Camacho, Carlos J. Proceedings of the National Academy of Sciences, Vol. 106, Issue 47 https://doi.org/10.1073/pnas.0907710106	journal	November 2009
Crystal Structure of Human Nocturnin Catalytic Domain Estrella, Michael A.; Du, Jin; Korennykh, Alexei Scientific Reports, Vol. 8, Issue 1 https://doi.org/10.1038/s41598-018-34615-0	journal	November 2018
Consensus Bayesian assessment of protein molecular mass from solution X-ray scattering data Hajizadeh, Nelly R.; Franke, Daniel; Jeffries, Cy M. Scientific Reports, Vol. 8, Issue 1 https://doi.org/10.1038/s41598-018-25355-2	journal	May 2018
Oxidative Stress in Obesity: A Critical Component in Human Diseases Marseglia, Lucia; Manti, Sara; D’Angelo, Gabriella International Journal of Molecular Sciences, Vol. 16, Issue 1 https://doi.org/10.3390/ijms16010378	journal	December 2014
Quantitative Proteomics Reveals a Dynamic Interactome and Phase-Specific Phosphorylation in the Neurospora Circadian Clock Baker, Christopher L.; Kettenbach, Arminja N.; Loros, Jennifer J. Molecular Cell, Vol. 34, Issue 3 https://doi.org/10.1016/j.molcel.2009.04.023	journal	May 2009
SASBDB: Towards an automatically curated and validated repository for biological scattering data Kikhney, Alexey G.; Borges, Clemente R.; Molodenskiy, Dmitry S. Protein Science, Vol. 29, Issue 1 https://doi.org/10.1002/pro.3731	journal	October 2019
Roles of Reactive Oxygen Species on Insulin Resistance in Adipose Tissue Han, Chang Yeop Diabetes & Metabolism Journal, Vol. 40, Issue 4 https://doi.org/10.4093/dmj.2016.40.4.272	journal	January 2016
Kiss your tail goodbye: The role of PARN, Nocturnin, and Angel deadenylases in mRNA biology Godwin, Alan R.; Kojima, Shihoko; Green, Carla B. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, Vol. 1829, Issue 6-7 https://doi.org/10.1016/j.bbagrm.2012.12.004	journal	June 2013
Molecular chaperone function of Mia40 triggers consecutive induced folding steps of the substrate in mitochondrial protein import Banci, Lucia; Bertini, Ivano; Cefaro, Chiara Proceedings of the National Academy of Sciences, Vol. 107, Issue 47 https://doi.org/10.1073/pnas.1010095107	journal	November 2010
The relationship between folding and activity in UreG, an intrinsically disordered enzyme Palombo, Marta; Bonucci, Alessio; Etienne, Emilien Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/s41598-017-06330-9	journal	July 2017
ATSAS 3.0 : expanded functionality and new tools for small-angle scattering data analysis Manalastas-Cantos, Karen; Konarev, Petr V.; Hajizadeh, Nelly R. Journal of Applied Crystallography, Vol. 54, Issue 1 https://doi.org/10.1107/S1600576720013412	journal	February 2021
The Calvin cycle in cyanobacteria is regulated by CP12 via the NAD(H)/NADP(H) ratio under light/dark conditions: Regulation of the Calvin cycle by cyanobacterial CP12 Tamoi, Masahiro; Miyazaki, Takashi; Fukamizo, Tamo The Plant Journal, Vol. 42, Issue 4 https://doi.org/10.1111/j.1365-313X.2005.02391.x	journal	April 2005
Circadian Integration of Metabolism and Energetics Bass, J.; Takahashi, J. S. Science, Vol. 330, Issue 6009 https://doi.org/10.1126/science.1195027	journal	December 2010
Determination of the regularization parameter in indirect-transform methods using perceptual criteria Svergun, D. I. Journal of Applied Crystallography, Vol. 25, Issue 4, p. 495-503 https://doi.org/10.1107/S0021889892001663	journal	August 1992
Solution Structure of the KIX Domain of CBP Bound to the Transactivation Domain of CREB: A Model for Activator:Coactivator Interactions Radhakrishnan, Ishwar; Pérez-Alvarado, Gabriela C.; Parker, David Cell, Vol. 91, Issue 6 https://doi.org/10.1016/S0092-8674(00)80463-8	journal	December 1997
Advanced ensemble modelling of flexible macromolecules using X-ray solution scattering Tria, Giancarlo; Mertens, Haydyn D. T.; Kachala, Michael IUCrJ, Vol. 2, Issue 2 https://doi.org/10.1107/S205225251500202X	journal	February 2015
Multifunctional deadenylase complexes diversify mRNA control Goldstrohm, Aaron C.; Wickens, Marvin Nature Reviews Molecular Cell Biology, Vol. 9, Issue 4 https://doi.org/10.1038/nrm2370	journal	April 2008
Graded enhancement of p53 binding to CREB-binding protein (CBP) by multisite phosphorylation Lee, Chul Won; Ferreon, Josephine C.; Ferreon, Allan Chris M. Proceedings of the National Academy of Sciences, Vol. 107, Issue 45 https://doi.org/10.1073/pnas.1013078107	journal	October 2010
Identification of cross-linked peptides from large sequence databases Rinner, Oliver; Seebacher, Jan; Walzthoeni, Thomas Nature Methods, Vol. 5, Issue 4 https://doi.org/10.1038/nmeth.1192	journal	March 2008
Accurate assessment of mass, models and resolution by small-angle scattering Rambo, Robert P.; Tainer, John A. Nature, Vol. 496, Issue 7446 https://doi.org/10.1038/nature12070	journal	April 2013
FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles Schneidman-Duhovny, Dina; Hammel, Michal; Tainer, John A. Nucleic Acids Research, Vol. 44, Issue W1 https://doi.org/10.1093/nar/gkw389	journal	May 2016
SAXSMoW 2.0: Online calculator of the molecular weight of proteins in dilute solution from experimental SAXS data measured on a relative scale Piiadov, Vassili; Ares de Araújo, Evandro; Oliveira Neto, Mario Protein Science, Vol. 28, Issue 2 https://doi.org/10.1002/pro.3528	journal	December 2018
Differential processing and localization of human Nocturnin controls metabolism of mRNA and nicotinamide adenine dinucleotide cofactors Abshire, Elizabeth T.; Hughes, Kelsey L.; Diao, Rucheng Journal of Biological Chemistry, Vol. 295, Issue 44 https://doi.org/10.1074/jbc.RA120.012618	journal	October 2020
Identification of a novel vertebrate circadian clock-regulated gene encoding the protein nocturnin Green, C. B.; Besharse, J. C. Proceedings of the National Academy of Sciences, Vol. 93, Issue 25 https://doi.org/10.1073/pnas.93.25.14884	journal	December 1996
Temporal Control of Metabolic Amplitude by Nocturnin Stubblefield, Jeremy J.; Gao, Peng; Kilaru, Gokhul Cell Reports, Vol. 22, Issue 5 https://doi.org/10.1016/j.celrep.2018.01.011	journal	January 2018
Conformational heterogeneity and intrinsic disorder in enzyme regulation: Glucokinase as a case study Larion, Mioara; Miller, Brian; Brüschweiler, Rafael Intrinsically Disordered Proteins, Vol. 3, Issue 1 https://doi.org/10.1080/21690707.2015.1011008	journal	January 2015
Spatiotemporal regulation of NADP(H) phosphatase Nocturnin and its role in oxidative stress response Laothamatas, Isara; Gao, Peng; Wickramaratne, Anushka Proceedings of the National Academy of Sciences, Vol. 117, Issue 2 https://doi.org/10.1073/pnas.1913712117	journal	December 2019
BioXTAS RAW : improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis Hopkins, Jesse Bennett; Gillilan, Richard E.; Skou, Soren Journal of Applied Crystallography, Vol. 50, Issue 5 https://doi.org/10.1107/S1600576717011438	journal	September 2017
Improved radiation dose efficiency in solution SAXS using a sheath flow sample environment Kirby, Nigel; Cowieson, Nathan; Hawley, Adrian M. Acta Crystallographica Section D Structural Biology, Vol. 72, Issue 12 https://doi.org/10.1107/S2059798316017174	journal	November 2016
Domain Movements upon Activation of Phenylalanine Hydroxylase Characterized by Crystallography and Chromatography-Coupled Small-Angle X-ray Scattering Meisburger, Steve P.; Taylor, Alexander B.; Khan, Crystal A. Journal of the American Chemical Society, Vol. 138, Issue 20 https://doi.org/10.1021/jacs.6b01563	journal	May 2016
Setting the pace of the Neurospora circadian clock by multiple independent FRQ phosphorylation events Tang, C. -T.; Li, S.; Long, C. Proceedings of the National Academy of Sciences, Vol. 106, Issue 26 https://doi.org/10.1073/pnas.0904898106	journal	June 2009
2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update Trewhella, Jill; Duff, Anthony P.; Durand, Dominique Acta Crystallographica Section D Structural Biology, Vol. 73, Issue 9 https://doi.org/10.1107/S2059798317011597	journal	August 2017
Oxidative Stress and Obesity: The Chicken or the Egg? Aroor, A. R.; DeMarco, V. G. Diabetes, Vol. 63, Issue 7 https://doi.org/10.2337/db14-0424	journal	June 2014
Changes in poly(A) tail length dynamics from the loss of the circadian deadenylase Nocturnin Kojima, Shihoko; Gendreau, Kerry L.; Sher-Chen, Elaine L. Scientific Reports, Vol. 5, Issue 1 https://doi.org/10.1038/srep17059	journal	November 2015
The Meter of Metabolism Green, Carla B.; Takahashi, Joseph S.; Bass, Joseph Cell, Vol. 134, Issue 5 https://doi.org/10.1016/j.cell.2008.08.022	journal	September 2008
Circadian physiology of metabolism Panda, Satchidananda Science, Vol. 354, Issue 6315 https://doi.org/10.1126/science.aah4967	journal	November 2016
The redox-switch domain of Hsp33 functions as dual stress sensor Ilbert, Marianne; Horst, Janina; Ahrens, Sebastian Nature Structural & Molecular Biology, Vol. 14, Issue 6 https://doi.org/10.1038/nsmb1244	journal	May 2007
Correlation Map, a goodness-of-fit test for one-dimensional X-ray scattering spectra Franke, Daniel; Jeffries, Cy M.; Svergun, Dmitri I. Nature Methods, Vol. 12, Issue 5 https://doi.org/10.1038/nmeth.3358	journal	April 2015

Similar Records

The metabolites NADP and NADPH are the targets of the circadian protein Nocturnin (Curled)

Journal Article · 2020 · Nature Communications · OSTI ID:1688564

The metabolites NADP⁺ and NADPH are the targets of the circadian protein Nocturnin (Curled)

Journal Article · 2019 · Nature Communications · OSTI ID:1624154

Confirmation of a blocked amino terminus of sulfhydryl oxidase

Journal Article · 1990 · Journal of Dairy Science; (USA) · OSTI ID:5962352

The Disordered Amino Terminus of the Circadian Enzyme Nocturnin Modulates Its NADP(H) Phosphatase Ac

Citation Formats

References (46)

Similar Records

Related Subjects