The Impact of Second Coordination Sphere Methionine-Aromatic Interactions in Copper Proteins

Fedoretz-Maxwell, Brooklyn P.; Shin, Catherine H.; MacNeil, Gregory A.; Worrall, Liam J.; Park, Rachel; Strynadka, Natalie C.J.; Walsby, Charles J.; Warren, Jeffrey J.

doi:10.1021/acs.inorgchem.2c00030

The Impact of Second Coordination Sphere Methionine-Aromatic Interactions in Copper Proteins

Journal Article · 28 February 2022 · Inorg. Chem.

DOI:https://doi.org/10.1021/acs.inorgchem.2c00030· OSTI ID:1869884

Fedoretz-Maxwell, Brooklyn P.; Shin, Catherine H.; MacNeil, Gregory A.; Worrall, Liam J.; Park, Rachel; Strynadka, Natalie C.J.; Walsby, Charles J.; Warren, Jeffrey J.

Research Organization:: Advanced Photon Source (APS), Argonne National Laboratory (ANL), Argonne, IL (US)

Sponsoring Organization:: DOE - Office Of Science; FOREIGN

OSTI ID:: 1869884

Journal Information:: Inorg. Chem., Journal Name: Inorg. Chem. Journal Issue: (14) Vol. 61

Country of Publication:: United States

Language:: ENGLISH

References (54)

Electron Tunneling in Single Crystals of Pseudomonas a eruginosa Azurins Crane, Brian R.; Di Bilio, Angel J.; Winkler, Jay R. Journal of the American Chemical Society, Vol. 123, Issue 47 https://doi.org/10.1021/ja0115870	journal	November 2001
Flexibility of the metal-binding region in apo-cupredoxins Zaballa, María-Eugenia; Abriata, Luciano A.; Donaire, Antonio Proceedings of the National Academy of Sciences, Vol. 109, Issue 24 https://doi.org/10.1073/pnas.1119460109	journal	May 2012
Electron transfers in chemistry and biology Marcus, R. A.; Sutin, Norman Biochimica et Biophysica Acta (BBA) - Reviews on Bioenergetics, Vol. 811, Issue 3 https://doi.org/10.1016/0304-4173(85)90014-X	journal	August 1985
Rationally tuning the reduction potential of a single cupredoxin beyond the natural range Marshall, Nicholas M.; Garner, Dewain K.; Wilson, Tiffany D. Nature, Vol. 462, Issue 7269 https://doi.org/10.1038/nature08551	journal	November 2009
The Methionine-aromatic Motif Plays a Unique Role in Stabilizing Protein Structure Valley, Christopher C.; Cembran, Alessandro; Perlmutter, Jason D. Journal of Biological Chemistry, Vol. 287, Issue 42 https://doi.org/10.1074/jbc.M112.374504	journal	August 2012
An outer-sphere hydrogen-bond network constrains copper coordination in blue proteins Machczynski, Michael C.; Gray, Harry B.; Richards, John H. Journal of Inorganic Biochemistry, Vol. 88, Issue 3-4 https://doi.org/10.1016/S0162-0134(02)00364-1	journal	February 2002
Metalloproteins Containing Cytochrome, Iron–Sulfur, or Copper Redox Centers Liu, Jing; Chakraborty, Saumen; Hosseinzadeh, Parisa Chemical Reviews, Vol. 114, Issue 8 https://doi.org/10.1021/cr400479b	journal	March 2014
Outer-Sphere Effects on Reduction Potentials of Copper Sites in Proteins: The Curious Case of High Potential Type 2 C112D/M121E Pseudomonas aeruginosa Azurin Lancaster, Kyle M.; Sproules, Stephen; Palmer, Joshua H. Journal of the American Chemical Society, Vol. 132, Issue 41 https://doi.org/10.1021/ja105731x	journal	October 2010
Structure-function correlations in tyrosinases Kanteev, Margarita; Goldfeder, Mor; Fishman, Ayelet Protein Science, Vol. 24, Issue 9 https://doi.org/10.1002/pro.2734	journal	July 2015
Cassette mutagenesis of Met121 in azurin from Pseudomonas aeruginosa Karlsson, B. Göran; Nordling, Margareta; Pascher, Torbjörn "Protein Engineering, Design and Selection", Vol. 4, Issue 3 https://doi.org/10.1093/protein/4.3.343	journal	January 1991
Reduction potential variations in azurin through secondary coordination sphere phenylalanine incorporations Berry, Steven M.; Baker, Madelyn H.; Reardon, Nicole J. Journal of Inorganic Biochemistry, Vol. 104, Issue 10 https://doi.org/10.1016/j.jinorgbio.2010.06.004	journal	October 2010
Analysis of the interactions of sulfur-containing amino acids in membrane proteins: Interactions Involving Met and Cys in Membrane Proteins Gómez-Tamayo, José C.; Cordomí, Arnau; Olivella, Mireia Protein Science, Vol. 25, Issue 8 https://doi.org/10.1002/pro.2955	journal	June 2016
Structural Studies of Two Mutants of Amicyanin from Paracoccus denitrificans That Stabilize the Reduced State of the Copper ^, Carrell, Christopher J.; Sun, Dapeng; Jiang, Shoulei Biochemistry, Vol. 43, Issue 29 https://doi.org/10.1021/bi049634z	journal	June 2004
Copper coordination in blue proteins Gray, Harry B.; Malmström, Bo G.; Williams, R. J. P. JBIC Journal of Biological Inorganic Chemistry, Vol. 5, Issue 5 https://doi.org/10.1007/s007750000146	journal	October 2000
Probing the Role of Axial Methionine in the Blue Copper Center of Azurin with Unnatural Amino Acids Berry, Steven M.; Ralle, Martina; Low, Donald W. Journal of the American Chemical Society, Vol. 125, Issue 29 https://doi.org/10.1021/ja029699u	journal	July 2003
The importance of Asn47 for structure and reactivity of azurin from Alcaligenes denitrificans as studied by site-directed mutagenesis and spectroscopy. Hoitink, C. W.; Canters, G. W. Journal of Biological Chemistry, Vol. 267, Issue 20 https://doi.org/10.1016/S0021-9258(19)49644-0	journal	July 1992
Type-zero copper proteins Lancaster, Kyle M.; George, Serena DeBeer; Yokoyama, Keiko Nature Chemistry, Vol. 1, Issue 9 https://doi.org/10.1038/nchem.412	journal	November 2009
Electron tunneling in biological molecules Winkler, J. R.; Di Bilio, Angel J.; Farrow, N. A. Pure and Applied Chemistry, Vol. 71, Issue 9 https://doi.org/10.1351/pac199971091753	journal	September 1999
Gene synthesis, expression, and mutagenesis of the blue copper proteins azurin and plastocyanin. Chang, T. K.; Iverson, S. A.; Rodrigues, C. G. Proceedings of the National Academy of Sciences, Vol. 88, Issue 4 https://doi.org/10.1073/pnas.88.4.1325	journal	February 1991
The effect of pH and temperature on the structure of the active site of azurin from Pseudomonas aeruginosa Adman, E. T.; Canters, G. W.; Hill, H. A. O. FEBS Letters, Vol. 143, Issue 2 https://doi.org/10.1016/0014-5793(82)80118-X	journal	July 1982
Structures of ruthenium-modified Pseudomonas aeruginosa azurin and [Ru(2,2′-bipyridine) ₂ (imidazole) ₂ ]SO ₄ ·10H ₂ O Faham, Salem; Day, Michael W.; Connick, William B. Acta Crystallographica Section D Biological Crystallography, Vol. 55, Issue 2 https://doi.org/10.1107/S0907444998010464	journal	February 1999
Clustering of Aromatic Amino Acid Residues around Methionine in Proteins Gibbs, Curtis A.; Weber, David S.; Warren, Jeffrey J. Biomolecules, Vol. 12, Issue 1 https://doi.org/10.3390/biom12010006	journal	December 2021
The interaction between methionine and two aromatic amino acids is an abundant and multifunctional motif in proteins Weber, David S.; Warren, Jeffrey J. Archives of Biochemistry and Biophysics, Vol. 672 https://doi.org/10.1016/j.abb.2019.07.018	journal	September 2019
Binding of Copper and Silver to Single-Site Variants of Peptidylglycine Monooxygenase Reveals the Structure and Chemistry of the Individual Metal Centers Chauhan, Shefali; Kline, Chelsey D.; Mayfield, Mary Biochemistry, Vol. 53, Issue 6 https://doi.org/10.1021/bi4015264	journal	February 2014
Reorganization Energy of Blue Copper: Effects of Temperature and Driving Force on the Rates of Electron Transfer in Ruthenium- and Osmium-Modified Azurins Di Bilio, Angel J.; Hill, Michael G.; Bonander, Nicklas Journal of the American Chemical Society, Vol. 119, Issue 41 https://doi.org/10.1021/ja971518e	journal	October 1997
Two Tryptophans Are Better Than One in Accelerating Electron Flow through a Protein Takematsu, Kana; Williamson, Heather R.; Nikolovski, Pavle ACS Central Science, Vol. 5, Issue 1 https://doi.org/10.1021/acscentsci.8b00882	journal	January 2019
X-ray structure of a two-domain type laccase: A missing link in the evolution of multi-copper proteins Komori, Hirofumi; Miyazaki, Kentaro; Higuchi, Yoshiki FEBS Letters, Vol. 583, Issue 7 https://doi.org/10.1016/j.febslet.2009.03.008	journal	March 2009
Cu(I) recognition via cation-π and methionine interactions in CusF Xue, Yi; Davis, Anna V.; Balakrishnan, Gurusamy Nature Chemical Biology, Vol. 4, Issue 2 https://doi.org/10.1038/nchembio.2007.57	journal	December 2007
Design of a single protein that spans the entire 2-V range of physiological redox potentials Hosseinzadeh, Parisa; Marshall, Nicholas M.; Chacón, Kelly N. Proceedings of the National Academy of Sciences, Vol. 113, Issue 2 https://doi.org/10.1073/pnas.1515897112	journal	December 2015
Electronic Structures of Metal Sites in Proteins and Models: Contributions to Function in Blue Copper Proteins Solomon, Edward I.; Szilagyi, Robert K.; DeBeer George, Serena Chemical Reviews, Vol. 104, Issue 2 https://doi.org/10.1021/cr0206317	journal	February 2004
Search and clustering orders of magnitude faster than BLAST Edgar, Robert C. Bioinformatics, Vol. 26, Issue 19, p. 2460-2461 https://doi.org/10.1093/bioinformatics/btq461	journal	August 2010
Electron tunneling through proteins Gray, Harry B.; Winkler, Jay R. Quarterly Reviews of Biophysics, Vol. 36, Issue 3 https://doi.org/10.1017/S0033583503003913	journal	August 2003
Dioxygen Binds End-On to Mononuclear Copper in a Precatalytic Enzyme Complex Prigge, S. T. Science, Vol. 304, Issue 5672 https://doi.org/10.1126/science.1094583	journal	May 2004
A survey of methionine-aromatic interaction geometries in the oxidoreductase class of enzymes: What could Met-aromatic interactions be doing near metal sites? Weber, David S.; Warren, Jeffrey J. Journal of Inorganic Biochemistry, Vol. 186 https://doi.org/10.1016/j.jinorgbio.2018.05.008	journal	September 2018
NMR Solution Structure of Cu(I) Rusticyanin fromThiobacillus ferrooxidans: Structural Basis for the Extreme Acid Stability and Redox Potential Botuyan, Maria Victoria; Toy-Palmer, Anna; Chung, John Journal of Molecular Biology, Vol. 263, Issue 5 https://doi.org/10.1006/jmbi.1996.0613	journal	November 1996
Spectroscopy and Reactivity of a Photogenerated Tryptophan Radical in a Structurally Defined Protein Environment Miller, Jeremiah E.; Grǎdinaru, Cristian; Crane, Brian R. Journal of the American Chemical Society, Vol. 125, Issue 47 https://doi.org/10.1021/ja037203i	journal	November 2003
EasySpin, a comprehensive software package for spectral simulation and analysis in EPR Stoll, Stefan; Schweiger, Arthur Journal of Magnetic Resonance, Vol. 178, Issue 1, p. 42-55 https://doi.org/10.1016/j.jmr.2005.08.013	journal	January 2006
Crystal structure analysis of oxidized Pseudomonas aeruginosa azurin at pH 5·5 and pH 9·0 Nar, Herbert; Messerschmidt, Albrecht; Huber, Robert Journal of Molecular Biology, Vol. 221, Issue 3 https://doi.org/10.1016/0022-2836(91)80173-R	journal	October 1991
Hydrogen Bonding in the Blue-Copper Site. Resonance Raman Study van Gastel, M.; Nagano, Y.; Zondervan, R. The Journal of Physical Chemistry B, Vol. 106, Issue 15 https://doi.org/10.1021/jp013839p	journal	March 2002
Non-covalent interactions in blue copper protein probed by Met16 mutation and electronic and resonance Raman spectroscopy of Achromobacter cycloclastes pseudoazurin Fitzpatrick, Marzena B.; Obara, Yuji; Fujita, Koyu Journal of Inorganic Biochemistry, Vol. 104, Issue 3 https://doi.org/10.1016/j.jinorgbio.2009.11.004	journal	March 2010
Redox properties of tyrosine and related molecules Warren, Jeffrey J.; Winkler, Jay R.; Gray, Harry B. FEBS Letters, Vol. 586, Issue 5 https://doi.org/10.1016/j.febslet.2011.12.014	journal	December 2011
Cation-pi interactions in aromatics of biological and medicinal interest: electrostatic potential surfaces as a useful qualitative guide. Mecozzi, S.; West, A. P.; Dougherty, D. A. Proceedings of the National Academy of Sciences, Vol. 93, Issue 20 https://doi.org/10.1073/pnas.93.20.10566	journal	October 1996
Determining the oxidation state of elements by X-ray crystallography Lennartz, Frank; Jeoung, Jae-Hun; Ruenger, Stefan Acta Crystallographica Section D Structural Biology, Vol. 78, Issue 2 https://doi.org/10.1107/S2059798321013048	journal	January 2022
Reduction Potential Tuning of the Blue Copper Center in Pseudomonas aeruginosa Azurin by the Axial Methionine as Probed by Unnatural Amino Acids Garner, Dewain K.; Vaughan, Mark D.; Hwang, Hee Jung Journal of the American Chemical Society, Vol. 128, Issue 49 https://doi.org/10.1021/ja062732i	journal	December 2006
Spectroscopic and DFT Studies of Second-Sphere Variants of the Type 1 Copper Site in Azurin: Covalent and Nonlocal Electrostatic Contributions to Reduction Potentials Hadt, Ryan G.; Sun, Ning; Marshall, Nicholas M. Journal of the American Chemical Society, Vol. 134, Issue 40 https://doi.org/10.1021/ja306438n	journal	October 2012
Fluctuating hydrogen-bond networks govern anomalous electron transfer kinetics in a blue copper protein Kretchmer, Joshua S.; Boekelheide, Nicholas; Warren, Jeffrey J. Proceedings of the National Academy of Sciences, Vol. 115, Issue 24 https://doi.org/10.1073/pnas.1805719115	journal	May 2018
Role of structural determinants in folding of the sandwich-like protein Pseudomonas aeruginosa azurin Wilson, Corey J.; Wittung-Stafshede, Pernilla Proceedings of the National Academy of Sciences, Vol. 102, Issue 11 https://doi.org/10.1073/pnas.0501038102	journal	March 2005
Electron Flow through Nitrotyrosinate in Pseudomonas aeruginosa Azurin Warren, Jeffrey J.; Herrera, Nadia; Hill, Michael G. Journal of the American Chemical Society, Vol. 135, Issue 30 https://doi.org/10.1021/ja403734n	journal	July 2013
Inner- and outer-sphere metal coordination in blue copper proteins Warren, Jeffrey J.; Lancaster, Kyle M.; Richards, John H. Journal of Inorganic Biochemistry, Vol. 115 https://doi.org/10.1016/j.jinorgbio.2012.05.002	journal	October 2012
Copper Active Sites in Biology Solomon, Edward I.; Heppner, David E.; Johnston, Esther M. Chemical Reviews, Vol. 114, Issue 7 https://doi.org/10.1021/cr400327t	journal	January 2014
The Met99Gln Mutant of Amicyanin from Paracoccus versutus Diederix, Rutger E. M.; Canters, Gerard W.; Dennison, Christopher Biochemistry, Vol. 39, Issue 31 https://doi.org/10.1021/bi000648o	journal	July 2000
Electron-transfer reactions of ruthenium ammines Meyer, Thomas J.; Taube, Henry Inorganic Chemistry, Vol. 7, Issue 11 https://doi.org/10.1021/ic50069a038	journal	November 1968
Reduction potentials and their pH dependence in site-directed-mutant forms of azurin from Pseudomonas aeruginosa Pascher, Torbjorn; Karlsson, B. Goran; Nordling, Margareta European Journal of Biochemistry, Vol. 212, Issue 2 https://doi.org/10.1111/j.1432-1033.1993.tb17661.x	journal	March 1993
Tryptophan-Accelerated Electron Flow Across a Protein–Protein Interface Takematsu, Kana; Williamson, Heather; Blanco-Rodríguez, Ana María Journal of the American Chemical Society, Vol. 135, Issue 41 https://doi.org/10.1021/ja406830d	journal	October 2013

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