Microreactor equipped with naturally acid-resistant histidine ammonia lyase from an extremophile

Ade, Carina; Marcelino, Thais F.; Dulchavsky, Mark; Wu, Kevin; Bardwell, James C.A.; Stadler, Brigitte

doi:10.1039/D2MA00051B

Title: Microreactor equipped with naturally acid-resistant histidine ammonia lyase from an extremophile

Journal Article · 01 January 2022 · Mater. Adv.

DOI:https://doi.org/10.1039/D2MA00051B· OSTI ID:1866431

Ade, Carina; Marcelino, Thais F.; Dulchavsky, Mark; Wu, Kevin; Bardwell, James C.A.; Stadler, Brigitte

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Research Organization:: Argonne National Laboratory (ANL), Argonne, IL (United States). Advanced Photon Source (APS)

Sponsoring Organization:: DOE - Office Of Science; FOREIGN

OSTI ID:: 1866431

Journal Information:: Mater. Adv., Vol. 3, Issue (8)

Country of Publication:: United States

Language:: ENGLISH

References (62)

Formulation and PEGylation optimization of the therapeutic PEGylated phenylalanine ammonia lyase for the treatment of phenylketonuria Bell, Sean M.; Wendt, Dan J.; Zhang, Yanhong PLOS ONE, Vol. 12, Issue 3 https://doi.org/10.1371/journal.pone.0173269	journal	March 2017
Pegvaliase for the treatment of phenylketonuria: Results of a long-term phase 3 clinical trial program (PRISM) Thomas, Janet; Levy, Harvey; Amato, Stephen Molecular Genetics and Metabolism, Vol. 124, Issue 1 https://doi.org/10.1016/j.ymgme.2018.03.006	journal	May 2018
Enzyme Therapy: Current Challenges and Future Perspectives de la Fuente, Miguel; Lombardero, Laura; Gómez-González, Alfonso International Journal of Molecular Sciences, Vol. 22, Issue 17 https://doi.org/10.3390/ijms22179181	journal	August 2021
Pegaspargase: a review of clinical studies Graham, M. Advanced Drug Delivery Reviews, Vol. 55, Issue 10 https://doi.org/10.1016/S0169-409X(03)00110-8	journal	September 2003
Rasburicase: A Review of its Use in the Management of Anticancer Therapy-Induced Hyperuricaemia Oldfield, Vicki; Perry, Caroline M. Drugs, Vol. 66, Issue 4 https://doi.org/10.2165/00003495-200666040-00008	journal	January 2006
Pancreatic enzyme replacement therapy Peter, Layer; Jutta, Keller; Lankisch, Paul G. Current Gastroenterology Reports, Vol. 3, Issue 2 https://doi.org/10.1007/s11894-001-0005-8	journal	March 2001
Improvements to the APBS biomolecular solvation software suite: Improvements to the APBS Software Suite Jurrus, Elizabeth; Engel, Dave; Star, Keith Protein Science, Vol. 27, Issue 1 https://doi.org/10.1002/pro.3280	journal	October 2017
Encapsulation, protection, and delivery of bioactive proteins and peptides using nanoparticle and microparticle systems: A review McClements, David Julian Advances in Colloid and Interface Science, Vol. 253 https://doi.org/10.1016/j.cis.2018.02.002	journal	March 2018
Wide pH range tolerance in extremophiles: towards understanding an important phenomenon for future biotechnology Dhakar, Kusum; Pandey, Anita Applied Microbiology and Biotechnology, Vol. 100, Issue 6 https://doi.org/10.1007/s00253-016-7285-2	journal	January 2016
Extremophilic adaptations and biotechnological applications in diverse environments Charlesworth, James; P. Burns, Brendan AIMS Microbiology, Vol. 2, Issue 3 https://doi.org/10.3934/microbiol.2016.3.251	journal	January 2016
Extremozymes: A Potential Source for Industrial Applications Dumorne;, Kelly; Cordova, David Camacho; Astorga-Elo, Marcia Journal of Microbiology and Biotechnology, Vol. 27, Issue 4 https://doi.org/10.4014/jmb.1611.11006	journal	April 2017
Revisiting the scope and applications of food enzymes from extremophiles Akanbi, Taiwo O.; Ji, Dawei; Agyei, Dominic Journal of Food Biochemistry, Vol. 44, Issue 11 https://doi.org/10.1111/jfbc.13475	journal	September 2020
Histone Lysine Methyltransferase SET7/9: Formation of a Water Channel Precedes Each Methyl Transfer Zhang, Xiaodong; Bruice, Thomas C. Biochemistry, Vol. 46, Issue 51 https://doi.org/10.1021/bi7014579	journal	November 2007
Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase Saiki, R. K.; Gelfand, D. H.; Stoffel, S. Science, Vol. 239, Issue 4839, p. 487-491 https://doi.org/10.1126/science.2448875	journal	January 1988
The genus Nonomuraea : A review of a rare actinomycete taxon for novel metabolites: Nonomuraea : A potent actinomycete for novel metabolites Sungthong, Rungroch; Nakaew, Nareeluk Journal of Basic Microbiology, Vol. 55, Issue 5 https://doi.org/10.1002/jobm.201300691	journal	March 2014
Anti-inflammatory activity of a thermophilic serine protease inhibitor from extremophile Pyrobaculum neutrophilum Fei, Rui; Zhang, Huan; Zhong, Sheng European Journal of Inflammation, Vol. 15, Issue 3 https://doi.org/10.1177/1721727X17739516	journal	October 2017
Life in acid: pH homeostasis in acidophiles Baker-Austin, Craig; Dopson, Mark Trends in Microbiology, Vol. 15, Issue 4 https://doi.org/10.1016/j.tim.2007.02.005	journal	April 2007
Thermodynamic principles for the engineering of pH-driven conformational switches and acid insensitive proteins Bell-Upp, Peregrine; Robinson, Aaron C.; Whitten, Steven T. Biophysical Chemistry, Vol. 159, Issue 1 https://doi.org/10.1016/j.bpc.2011.06.016	journal	November 2011
Cold and Hot Extremozymes: Industrial Relevance and Current Trends Sarmiento, Felipe; Peralta, Rocío; Blamey, Jenny M. Frontiers in Bioengineering and Biotechnology, Vol. 3 https://doi.org/10.3389/fbioe.2015.00148	journal	October 2015
Synthetic and Therapeutic Applications of Ammonia-lyases and Aminomutases Parmeggiani, Fabio; Weise, Nicholas J.; Ahmed, Syed T. Chemical Reviews, Vol. 118, Issue 1 https://doi.org/10.1021/acs.chemrev.6b00824	journal	May 2017
The ammonia-lyases: enzymes that use a wide range of approaches to catalyze the same type of reaction Viola, Ronald E. Critical Reviews in Biochemistry and Molecular Biology, Vol. 54, Issue 6 https://doi.org/10.1080/10409238.2019.1708261	journal	November 2019
Regulation of the Histidine Utilization (Hut) System in Bacteria Bender, R. A. Microbiology and Molecular Biology Reviews, Vol. 76, Issue 3 https://doi.org/10.1128/MMBR.00014-12	journal	August 2012
Genome sequence of Picrophilus torridus and its implications for life around pH 0 Fütterer, O.; Angelov, A.; Liesegang, H. Proceedings of the National Academy of Sciences, Vol. 101, Issue 24 https://doi.org/10.1073/pnas.0401356101	journal	June 2004
Acidophilic bacteria and archaea: acid stable biocatalysts and their potential applications Sharma, Archana; Kawarabayasi, Yutaka; Satyanarayana, T. Extremophiles, Vol. 16, Issue 1 https://doi.org/10.1007/s00792-011-0402-3	journal	November 2011
Kosmotoga olearia gen. nov., sp. nov., a thermophilic, anaerobic heterotroph isolated from an oil production fluid DiPippo, J. L.; Nesbo, C. L.; Dahle, H. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 12 https://doi.org/10.1099/ijs.0.008045-0	journal	July 2009
Identification and characterization of a bacterial glutamic peptidase Jensen, Kenneth; Oestergaard, Peter R.; Wilting, Reinhard BMC Biochemistry, Vol. 11, Issue 1 https://doi.org/10.1186/1471-2091-11-47	journal	January 2010
Picrophilus gen. nov., fam. nov.: a novel aerobic, heterotrophic, thermoacidophilic genus and family comprising archaea capable of growth around pH 0. Schleper, C.; Puehler, G.; Holz, I. Journal of Bacteriology, Vol. 177, Issue 24 https://doi.org/10.1128/jb.177.24.7050-7059.1995	journal	December 1995
A Thermophilic, Acidophilic Mycoplasma Isolated from a Coal Refuse Pile Darland, G.; Brock, T. D.; Samsonoff, W. Science, Vol. 170, Issue 3965 https://doi.org/10.1126/science.170.3965.1416	journal	December 1970
Isolation of the anaerobic thermoacidophilic crenarchaeote Acidilobus saccharovorans sp. nov. and proposal of Acidilobales ord. nov., including Acidilobaceae fam. nov. and Caldisphaeraceae fam. nov. Prokofeva, M. I.; Kostrikina, N. A.; Kolganova, T. V. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 59, Issue 12 https://doi.org/10.1099/ijs.0.010355-0	journal	July 2009
Caldisphaera lagunensis gen. nov., sp. nov., a novel thermoacidophilic crenarchaeote isolated from a hot spring at Mt Maquiling, Philippines Itoh, T. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 53, Issue 4 https://doi.org/10.1099/ijs.0.02580-0	journal	July 2003
Protein disulfide engineering Dombkowski, Alan A.; Sultana, Kazi Zakia; Craig, Douglas B. FEBS Letters, Vol. 588, Issue 2 https://doi.org/10.1016/j.febslet.2013.11.024	journal	November 2013
Protein fusion tags for efficient expression and purification of recombinant proteins in the periplasmic space of E. coli Malik, Ajamaluddin 3 Biotech, Vol. 6, Issue 1 https://doi.org/10.1007/s13205-016-0397-7	journal	February 2016
Thermoplasma acidophilum: Intracellular pH and potassium concentration Searcy, Dennis G. Biochimica et Biophysica Acta (BBA) - General Subjects, Vol. 451, Issue 1 https://doi.org/10.1016/0304-4165(76)90278-6	journal	November 1976
SUMO fusion technology for difficult-to-express proteins Butt, Tauseef R.; Edavettal, Suzanne C.; Hall, John P. Protein Expression and Purification, Vol. 43, Issue 1 https://doi.org/10.1016/j.pep.2005.03.016	journal	September 2005
Crystal Structure of Histidine Ammonia-Lyase Revealing a Novel Polypeptide Modification as the Catalytic Electrophile ^, Schwede, Torsten F.; Rétey, János; Schulz, Georg E. Biochemistry, Vol. 38, Issue 17 https://doi.org/10.1021/bi982929q	journal	April 1999
Discovery of Two Cyanobacterial Phenylalanine Ammonia Lyases: Kinetic and Structural Characterization ^, Moffitt, Michelle C.; Louie, Gordon V.; Bowman, Marianne E. Biochemistry, Vol. 46, Issue 4 https://doi.org/10.1021/bi061774g	journal	January 2007
Supercharging Proteins Can Impart Unusual Resilience Lawrence, Michael S.; Phillips, Kevin J.; Liu, David R. Journal of the American Chemical Society, Vol. 129, Issue 33 https://doi.org/10.1021/ja071641y	journal	August 2007
Characterization of the Human Upper Gastrointestinal Contents Under Conditions Simulating Bioavailability/Bioequivalence Studies Kalantzi, Lida; Goumas, Konstantinos; Kalioras, Vasilios Pharmaceutical Research, Vol. 23, Issue 1 https://doi.org/10.1007/s11095-005-8476-1	journal	January 2006
Upper Gastrointestinal (GI) pH in Young, Healthy Men and Women Dressman, Jennifer B.; Berardi, Rosemary R.; Dermentzoglou, Lambros C. Pharmaceutical Research, Vol. 07, Issue 7, p. 756-761 https://doi.org/10.1023/A:1015827908309	journal	January 1990
A standardised static in vitro digestion method suitable for food – an international consensus Minekus, M.; Alminger, M.; Alvito, P. Food Funct., Vol. 5, Issue 6 https://doi.org/10.1039/C3FO60702J	journal	January 2014
Polyethylene Glycol Enhanced Refolding of the Recombinant Human Tissue Transglutaminase Ambrus, Attila; Fésüs, László Preparative Biochemistry and Biotechnology, Vol. 31, Issue 1 https://doi.org/10.1081/PB-100103372	journal	February 2001
Oxidative renaturation of lysozyme at high concentrations Hevehan, Diane L.; De Bernardez Clark, Eliana Biotechnology and Bioengineering, Vol. 54, Issue 3 https://doi.org/10.1002/(SICI)1097-0290(19970505)54:3<221::AID-BIT3>3.0.CO;2-H	journal	May 1997
Solution pH jump during antibody and Fc-fusion protein thaw leads to increased aggregation Kent, Kevin P.; Schroeder, Chad E.; Sharma, Chandana Journal of Pharmaceutical Analysis, Vol. 8, Issue 5 https://doi.org/10.1016/j.jpha.2017.09.002	journal	October 2018
Polyphosphate Is a Primordial Chaperone Gray, Michael J.; Wholey, Wei-Yun; Wagner, Nico O. Molecular Cell, Vol. 53, Issue 5 https://doi.org/10.1016/j.molcel.2014.01.012	journal	March 2014
Protein refolding by pH-triggered chaperone binding and release Tapley, T. L.; Franzmann, T. M.; Chakraborty, S. Proceedings of the National Academy of Sciences, Vol. 107, Issue 3 https://doi.org/10.1073/pnas.0911610107	journal	December 2009
Folding Optimization In Vivo Uncovers New Chaperones Lennon, Christopher W.; Thamsen, Maike; Friman, Elias T. Journal of Molecular Biology, Vol. 427, Issue 18 https://doi.org/10.1016/j.jmb.2015.05.013	journal	September 2015
High-level soluble expression of a thermostable xylanase from thermophilic fungus Thermomyces lanuginosus in Escherichia coli via fusion with OsmY protein Le, Yilin; Wang, Huilei Protein Expression and Purification, Vol. 99 https://doi.org/10.1016/j.pep.2014.03.004	journal	July 2014
Positional effects of fusion partners on the yield and solubility of MBP fusion proteins Raran-Kurussi, Sreejith; Keefe, Karina; Waugh, David S. Protein Expression and Purification, Vol. 110 https://doi.org/10.1016/j.pep.2015.03.004	journal	June 2015
An efficient system for small protein expression and refolding Cheng, Yuan; Patel, Dinshaw J. Biochemical and Biophysical Research Communications, Vol. 317, Issue 2 https://doi.org/10.1016/j.bbrc.2004.03.068	journal	April 2004
Enzymatic reactions in confined environments Küchler, Andreas; Yoshimoto, Makoto; Luginbühl, Sandra Nature Nanotechnology, Vol. 11, Issue 5 https://doi.org/10.1038/nnano.2016.54	journal	May 2016
Enzyme-Laden Bioactive Hydrogel for Biocatalytic Monitoring and Regulation Wang, Xia; Wang, Qigang Accounts of Chemical Research, Vol. 54, Issue 5 https://doi.org/10.1021/acs.accounts.0c00832	journal	February 2021
A Review on Recent Advances in Stabilizing Peptides/Proteins upon Fabrication in Hydrogels from Biodegradable Polymers Raza, Faisal; Zafar, Hajra; Zhu, Ying Pharmaceutics, Vol. 10, Issue 1 https://doi.org/10.3390/pharmaceutics10010016	journal	January 2018
Design of gel structures in water and oil phases for improved delivery of bioactive food ingredients Mao, Like; Lu, Yao; Cui, Mengnan Critical Reviews in Food Science and Nutrition, Vol. 60, Issue 10 https://doi.org/10.1080/10408398.2019.1587737	journal	March 2019
Alginate: Properties and biomedical applications Lee, Kuen Yong; Mooney, David J. Progress in Polymer Science, Vol. 37, Issue 1 https://doi.org/10.1016/j.progpolymsci.2011.06.003	journal	January 2012
A Polymer Chemistry Point of View on Mucoadhesion and Mucopenetration Schattling, Philipp; Taipaleenmäki, Essi; Zhang, Yan Macromolecular Bioscience, Vol. 17, Issue 9 https://doi.org/10.1002/mabi.201700060	journal	July 2017
Mucopenetrating polymer – Lipid hybrid nanovesicles as subunits in alginate beads as an oral formulation Taipaleenmäki, Essi; Christensen, Gustav; Brodszkij, Edit Journal of Controlled Release, Vol. 322 https://doi.org/10.1016/j.jconrel.2020.03.047	journal	June 2020
Synthesis, properties, and biomedical applications of gelatin methacryloyl (GelMA) hydrogels Yue, Kan; Trujillo-de Santiago, Grissel; Alvarez, Mario Moisés Biomaterials, Vol. 73 https://doi.org/10.1016/j.biomaterials.2015.08.045	journal	December 2015
Mitochondria Encapsulation in Hydrogel‐Based Artificial Cells as ATP Producing Subunits Westensee, Isabella Nymann; Brodszkij, Edit; Qian, Xiaomin Small, Vol. 17, Issue 24 https://doi.org/10.1002/smll.202007959	journal	May 2021
Composite hydrogels based on gelatin, chitosan and polyvinyl alcohol to biomedical applications: a review Rodríguez-Rodríguez, Rogelio; Espinosa-Andrews, Hugo; Velasquillo-Martínez, Cristina International Journal of Polymeric Materials and Polymeric Biomaterials, Vol. 69, Issue 1 https://doi.org/10.1080/00914037.2019.1581780	journal	March 2019
Study of Gelling Behavior of Poly(vinyl alcohol)-Methacrylate for Potential Utilizations in Tissue Replacement and Drug Delivery Cavalieri, Francesca; Miano, Fausto; D'Antona, Paolo Biomacromolecules, Vol. 5, Issue 6 https://doi.org/10.1021/bm049654g	journal	September 2004
Evaluation of Hybrid Vesicles in an Intestinal Cell Model Based on Structured Paper Chips De Dios Andres, Paula; Westensee, Isabella N.; Brodszkij, Edit Biomacromolecules, Vol. 22, Issue 9 https://doi.org/10.1021/acs.biomac.1c00686	journal	August 2021
CCP 4 i 2: the new graphical user interface to the CCP 4 program suite Potterton, Liz; Agirre, Jon; Ballard, Charles Acta Crystallographica Section D Structural Biology, Vol. 74, Issue 2 https://doi.org/10.1107/S2059798317016035	journal	February 2018

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