Long promoter sequences form higher-order G-quadruplexes: an integrative structural biology study of

Monsen, R.C.; DeLeeuw, L.W.; Dean, W.L.; Gray, R.D.; Chakravarthy, S.; Hopkins, J.B.; Chaires, J.B.; Trent, J.O.

doi:10.1093/nar/gkac182

Long promoter sequences form higher-order G-quadruplexes: an integrative structural biology study of

Journal Article · 01 April 2022 · Nucleic Acids Res.

DOI:https://doi.org/10.1093/nar/gkac182· OSTI ID:1865438

Monsen, R.C.; DeLeeuw, L.W.; Dean, W.L.; Gray, R.D.; Chakravarthy, S.; Hopkins, J.B.; Chaires, J.B.; Trent, J.O.

Research Organization:: Advanced Photon Source (APS), Argonne National Laboratory (ANL), Argonne, IL (US)

Sponsoring Organization:: DOE - Office Of Science; NIH

OSTI ID:: 1865438

Journal Information:: Nucleic Acids Res., Journal Name: Nucleic Acids Res. Journal Issue: (7) Vol. 50

Country of Publication:: United States

Language:: ENGLISH

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Restoring Low Resolution Structure of Biological Macromolecules from Solution Scattering Using Simulated Annealing Svergun, D. I. Biophysical Journal, Vol. 76, Issue 6, p. 2879-2886 https://doi.org/10.1016/S0006-3495(99)77443-6	journal	June 1999
Monomer-Dimer Equilibrium for the 5′-5′ Stacking of Propeller-Type Parallel-Stranded G-Quadruplexes: NMR Structural Study Do, Ngoc Quang; Phan, Anh Tuân Chemistry - A European Journal, Vol. 18, Issue 46 https://doi.org/10.1002/chem.201103295	journal	September 2012
Evolving factor analysis for the resolution of overlapping chromatographic peaks Maeder, Marcel. Analytical Chemistry, Vol. 59, Issue 3 https://doi.org/10.1021/ac00130a035	journal	February 1987
Structure and Function of Multimeric G-Quadruplexes Kolesnikova, Sofia; Curtis, Edward A. Molecules, Vol. 24, Issue 17 https://doi.org/10.3390/molecules24173074	journal	August 2019
G-quadruplexes in promoters throughout the human genome Huppert, Julian L.; Balasubramanian, Shankar Nucleic Acids Research, Vol. 35, Issue 2 https://doi.org/10.1093/nar/gkl1057	journal	December 2006
Self-organization of G-quadruplex structures in the hTERT core promoter stabilized by polyaminic side chain perylene derivatives Micheli, Emanuela; Martufi, Matteo; Cacchione, Stefano Biophysical Chemistry, Vol. 153, Issue 1 https://doi.org/10.1016/j.bpc.2010.10.003	journal	December 2010
Solution structure of the major G-quadruplex formed in the human VEGF promoter in K+: insights into loop interactions of the parallel G-quadruplexes Agrawal, Prashansa; Hatzakis, Emmanuel; Guo, Kexiao Nucleic Acids Research, Vol. 41, Issue 22 https://doi.org/10.1093/nar/gkt784	journal	September 2013
Kinetics of tetramolecular quadruplexes Mergny, J. -L. Nucleic Acids Research, Vol. 33, Issue 1 https://doi.org/10.1093/nar/gki148	journal	January 2005
Coexistence of two main folded G-quadruplexes within a single G-rich domain in the EGFR promoter Greco, Maria L.; Kotar, Anita; Rigo, Riccardo Nucleic Acids Research, Vol. 45, Issue 17 https://doi.org/10.1093/nar/gkx678	journal	July 2017
Synchrotron radiation circular dichroism of various G-quadruplex structures Holm, Anne I. S.; Kohler, Bern; Hoffmann, Søren Vrønning Biopolymers, Vol. 93, Issue 5 https://doi.org/10.1002/bip.21354	journal	November 2009
The RAD17 Promoter Sequence Contains a Potential Tail-Dependent G-Quadruplex That Downregulates Gene Expression upon Oxidative Modification Zhu, Judy; Fleming, Aaron M.; Burrows, Cynthia J. ACS Chemical Biology, Vol. 13, Issue 9 https://doi.org/10.1021/acschembio.8b00522	journal	July 2018
Topological Characterization of Nucleic Acid G-Quadruplexes by UV Absorption and Circular Dichroism Karsisiotis, Andreas Ioannis; Hessari, Nason Ma'ani; Novellino, Ettore Angewandte Chemie International Edition, Vol. 50, Issue 45 https://doi.org/10.1002/anie.201105193	journal	September 2011
c-MYC promoter G-quadruplex formed at the 5′-end of NHE III 1 element: insights into biological relevance and parallel-stranded G-quadruplex stability Mathad, Raveendra I.; Hatzakis, Emmanuel; Dai, Jixun Nucleic Acids Research, Vol. 39, Issue 20 https://doi.org/10.1093/nar/gkr612	journal	July 2011
High-resolution three-dimensional NMR structure of the KRAS proto-oncogene promoter reveals key features of a G-quadruplex involved in transcriptional regulation Kerkour, Abdelaziz; Marquevielle, Julien; Ivashchenko, Stefaniia Journal of Biological Chemistry, Vol. 292, Issue 19 https://doi.org/10.1074/jbc.M117.781906	journal	May 2017
Quadruplex Nucleic Acids as Novel Therapeutic Targets Neidle, Stephen Journal of Medicinal Chemistry, Vol. 59, Issue 13 https://doi.org/10.1021/acs.jmedchem.5b01835	journal	February 2016
Water Dynamics in the Hydration Shells of Biomolecules Laage, Damien; Elsaesser, Thomas; Hynes, James T. Chemical Reviews, Vol. 117, Issue 16 https://doi.org/10.1021/acs.chemrev.6b00765	journal	March 2017
A G-Rich Sequence within the c-kit Oncogene Promoter Forms a Parallel G-Quadruplex Having Asymmetric G-Tetrad Dynamics Hsu, Shang-Te Danny; Varnai, Peter; Bugaut, Anthony Journal of the American Chemical Society, Vol. 131, Issue 37 https://doi.org/10.1021/ja904007p	journal	August 2009
Prediction of Hydrodynamic and Other Solution Properties of Rigid Proteins from Atomic- and Residue-Level Models Ortega, A.; Amorós, D.; García de la Torre, J. Biophysical Journal, Vol. 101, Issue 4 https://doi.org/10.1016/j.bpj.2011.06.046	journal	August 2011

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