Nonparallel transcriptional divergence during parallel adaptation

Fischer, Eva K.; Song, Youngseok; Hughes, Kimberly A.; Zhou, Wen; Hoke, Kim L.

doi:10.1111/mec.15823

Nonparallel transcriptional divergence during parallel adaptation

Journal Article · 01 March 2021 · Molecular Ecology

DOI:https://doi.org/10.1111/mec.15823· OSTI ID:1852607

^[1]; Song, Youngseok ^[2]; Hughes, Kimberly A. ^[3]; Zhou, Wen ^[2]; Hoke, Kim L. ^[4]

Department of Evolution, Ecology, and Behavior University of Illinois Urbana IL USA; Department of Biology Colorado State University Fort Collins CO USA; OSTI
Department of Statistics Colorado State University Fort Collins CO USA
Department of Biological Science Florida State University Tallahassee FL USA
Department of Biology Colorado State University Fort Collins CO USA

Not provided.

Research Organization:: J. Craig Venter Institute, Inc., Rockville, MD (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

DOE Contract Number:: SC0018344;

OSTI ID:: 1852607

Journal Information:: Molecular Ecology, Journal Name: Molecular Ecology Journal Issue: 6 Vol. 30; ISSN 0962-1083

Publisher:: Wiley

Country of Publication:: United States

Language:: English

References (90)

Parallel genetic evolution and speciation from standing variation Thompson, Ken A.; Osmond, Matthew M.; Schluter, Dolph Evolution Letters, Vol. 3, Issue 2 https://doi.org/10.1002/evl3.106	journal	March 2019
An Introduction to the Bootstrap Efron, Bradley; Tibshirani, Robert J. Chapman and Hall/CRC https://doi.org/10.1007/978-1-4899-4541-9	book	January 1993
From genes to phenotype: dynamical systems and evolvability Alberch, P. Genetica, Vol. 84, Issue 1 https://doi.org/10.1007/BF00123979	journal	May 1991
Population differences in predator recognition and attack cone avoidance in the guppy Poecilia reticulata Magurran, Anne E.; Seghers, Benoni H. Animal Behaviour, Vol. 40, Issue 3 https://doi.org/10.1016/S0003-3472(05)80524-X	journal	September 1990
Multiple-trait coevolution and environmental gradients in guppies Endler, John A. Trends in Ecology & Evolution, Vol. 10, Issue 1 https://doi.org/10.1016/S0169-5347(00)88956-9	journal	January 1995
Life history evolution in guppies (Poecilia reticulata): Guppies as a model for studying the evolutionary biology of aging Reznick, David N. Experimental Gerontology, Vol. 32, Issue 3 https://doi.org/10.1016/S0531-5565(96)00129-5	journal	May 1997
Neuropeptides and the evolution of social behavior Insel, T. Current Opinion in Neurobiology, Vol. 10, Issue 6 https://doi.org/10.1016/S0959-4388(00)00146-X	journal	December 2000
Genetic accommodation and behavioural evolution: insights from genomic studies Renn, Suzy C. P.; Schumer, Molly E. Animal Behaviour, Vol. 85, Issue 5 https://doi.org/10.1016/j.anbehav.2013.02.012	journal	May 2013
An Expanded View of Complex Traits: From Polygenic to Omnigenic Boyle, Evan A.; Li, Yang I.; Pritchard, Jonathan K. Cell, Vol. 169, Issue 7 https://doi.org/10.1016/j.cell.2017.05.038	journal	June 2017
Evolutionary transitions in controls reconcile adaptation with continuity of evolution Badyaev, Alexander V. Seminars in Cell & Developmental Biology, Vol. 88 https://doi.org/10.1016/j.semcdb.2018.05.014	journal	April 2019
Adaptation from standing genetic variation Barrett, R.; Schluter, D. Trends in Ecology & Evolution, Vol. 23, Issue 1 https://doi.org/10.1016/j.tree.2007.09.008	journal	January 2008
Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation? Arendt, J.; Reznick, D. Trends in Ecology & Evolution, Vol. 23, Issue 1 https://doi.org/10.1016/j.tree.2007.09.011	journal	January 2008
Predator exposure alters stress physiology in guppies across timescales Fischer, Eva K.; Harris, Rayna M.; Hofmann, Hans A. Hormones and Behavior, Vol. 65, Issue 2 https://doi.org/10.1016/j.yhbeh.2013.12.010	journal	February 2014
Experimentally induced life-history evolution in a natural population Reznick, David A.; Bryga, Heather; Endler, John A. Nature, Vol. 346, Issue 6282 https://doi.org/10.1038/346357a0	journal	July 1990
Non-adaptive plasticity potentiates rapid adaptive evolution of gene expression in nature Ghalambor, Cameron K.; Hoke, Kim L.; Ruell, Emily W. Nature, Vol. 525, Issue 7569 https://doi.org/10.1038/nature15256	journal	September 2015
Contesting the evidence for non-adaptive plasticity Mallard, François; Jakšić, Ana Marija; Schlötterer, Christian Nature, Vol. 555, Issue 7698 https://doi.org/10.1038/nature25496	journal	March 2018
Variation in plastic responses of a globally distributed picoplankton species to ocean acidification Schaum, Elisa; Rost, Björn; Millar, Andrew J. Nature Climate Change, Vol. 3, Issue 3 https://doi.org/10.1038/nclimate1774	journal	December 2012
The genetic causes of convergent evolution Stern, David L. Nature Reviews Genetics, Vol. 14, Issue 11 https://doi.org/10.1038/nrg3483	journal	October 2013
Turning induced plasticity into refined adaptations during range expansion Potticary, Ahva L.; Morrison, Erin S.; Badyaev, Alexander V. Nature Communications, Vol. 11, Issue 1 https://doi.org/10.1038/s41467-020-16938-7	journal	June 2020
Contrasting effects of environment and genetics generate a continuum of parallel evolution Stuart, Yoel E.; Veen, Thor; Weber, Jesse N. Nature Ecology & Evolution, Vol. 1, Issue 6 https://doi.org/10.1038/s41559-017-0158	journal	May 2017
Divergence and plasticity shape adaptive potential of the Pacific oyster Li, Li; Li, Ao; Song, Kai Nature Ecology & Evolution, Vol. 2, Issue 11 https://doi.org/10.1038/s41559-018-0668-2	journal	September 2018
The genetics of convergent evolution: insights from plant photosynthesis Heyduk, Karolina; Moreno-Villena, Jose J.; Gilman, Ian S. Nature Reviews Genetics, Vol. 20, Issue 8 https://doi.org/10.1038/s41576-019-0107-5	journal	March 2019
The frailty of adaptive hypotheses for the origins of organismal complexity Lynch, M. Proceedings of the National Academy of Sciences, Vol. 104, Issue Supplement 1 https://doi.org/10.1073/pnas.0702207104	journal	May 2007
Reliable neuromodulation from circuits with variable underlying structure Grashow, Rachel; Brookings, Ted; Marder, Eve Proceedings of the National Academy of Sciences, Vol. 106, Issue 28 https://doi.org/10.1073/pnas.0905614106	journal	June 2009
Molecular and functional basis of phenotypic convergence in white lizards at White Sands Rosenblum, Erica Bree; Römpler, Holger; Schöneberg, Torsten Proceedings of the National Academy of Sciences, Vol. 107, Issue 5 https://doi.org/10.1073/pnas.0911042107	journal	December 2009
Phenotypic plasticity facilitates recurrent rapid adaptation to introduced predators Scoville, A. G.; Pfrender, M. E. Proceedings of the National Academy of Sciences, Vol. 107, Issue 9 https://doi.org/10.1073/pnas.0912748107	journal	February 2010
Evolutionary change during experimental ocean acidification Pespeni, M. H.; Sanford, E.; Gaylord, B. Proceedings of the National Academy of Sciences, Vol. 110, Issue 17 https://doi.org/10.1073/pnas.1220673110	journal	April 2013
PNAS Plus: From the Cover: Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid Pankey, M. S.; Minin, V. N.; Imholte, G. C. Proceedings of the National Academy of Sciences, Vol. 111, Issue 44 https://doi.org/10.1073/pnas.1416574111	journal	October 2014
Ion channel degeneracy enables robust and tunable neuronal firing rates Drion, Guillaume; O’Leary, Timothy; Marder, Eve Proceedings of the National Academy of Sciences, Vol. 112, Issue 38 https://doi.org/10.1073/pnas.1516400112	journal	September 2015
A New Factor in Evolution (Continued) Baldwin, J. Mark The American Naturalist, Vol. 30, Issue 355 https://doi.org/10.1086/276428	journal	July 1896
Life‐History Evolution in Guppies. VII. The Comparative Ecology of High‐ and Low‐Predation Environments Reznick, David; Butler IV, Mark J.; Rodd, Helen The American Naturalist, Vol. 157, Issue 2 https://doi.org/10.1086/318627	journal	February 2001
Constraints on Adaptive Evolution: The Functional Trade‐Off between Reproduction and Fast‐Start Swimming Performance in the Trinidadian Guppy ( Poecilia reticulata ) Ghalambor, Cameron K.; Reznick, David N.; Walker, Jeffrey A. The American Naturalist, Vol. 164, Issue 1 https://doi.org/10.1086/421412	journal	July 2004
Environmental Change, Phenotypic Plasticity, and Genetic Compensation Grether, Gregory F. The American Naturalist, Vol. 166, Issue 4 https://doi.org/10.1086/432023	journal	October 2005
Parallelism Isn’t Perfect: Could Disease and Flooding Drive a Life-History Anomaly in Trinidadian Guppies? Fitzpatrick, Sarah W.; Torres-Dowdall, Julián; Reznick, David N. The American Naturalist, Vol. 183, Issue 2 https://doi.org/10.1086/674611	journal	February 2014
fdrtool: a versatile R package for estimating local and tail area-based false discovery rates Strimmer, K. Bioinformatics, Vol. 24, Issue 12 https://doi.org/10.1093/bioinformatics/btn209	journal	April 2008
STAR: ultrafast universal RNA-seq aligner Dobin, Alexander; Davis, Carrie A.; Schlesinger, Felix Bioinformatics, Vol. 29, Issue 1 https://doi.org/10.1093/bioinformatics/bts635	journal	October 2012
Compensatory foraging in Trinidadian guppies: Effects of acute and chronic predation threats Elvidge, Chris K.; Ramnarine, Indar; Brown, Grant E. Current Zoology, Vol. 60, Issue 3 https://doi.org/10.1093/czoolo/60.3.323	journal	June 2014
Predator-Induced Phenotypic Plasticity in Metabolism and Rate of Growth: Rapid Adaptation to a Novel Environment Handelsman, C. A.; Broder, E. D.; Dalton, C. M. Integrative and Comparative Biology, Vol. 53, Issue 6 https://doi.org/10.1093/icb/ict057	journal	June 2013
Phenotypic Plasticity Changes Correlations of Traits Following Experimental Introductions of Trinidadian Guppies (Poecilia reticulata) Handelsman, C. A.; Ruell, E. W.; Torres-Dowdall, J. Integrative and Comparative Biology, Vol. 54, Issue 5 https://doi.org/10.1093/icb/icu112	journal	September 2014
Can a Network Approach Resolve How Adaptive vs Nonadaptive Plasticity Impacts Evolutionary Trajectories? Fischer, Eva K.; Ghalambor, Cameron K.; Hoke, Kim L. Integrative and Comparative Biology, Vol. 56, Issue 5 https://doi.org/10.1093/icb/icw087	journal	July 2016
Remodeling Ancestral Phenotypic Plasticity in Local Adaptation: A New Framework to Explore the Role of Genetic Compensation in the Evolution of Homeostasis Velotta, Jonathan P.; Cheviron, Zachary A. Integrative and Comparative Biology, Vol. 58, Issue 6 https://doi.org/10.1093/icb/icy117	journal	October 2018
Plastic and Evolutionary Gene Expression Responses Are Correlated in European Grayling ( Thymallus thymallus ) Subpopulations Adapted to Different Thermal Environments Mäkinen, Hannu; Papakostas, Spiros; Vøllestad, Leif Asbjørn Journal of Heredity, Vol. 107, Issue 1 https://doi.org/10.1093/jhered/esv069	journal	August 2015
Natural Selection Canalizes Expression Variation of Environmentally Induced Plasticity-Enabling Genes Shaw, Joseph R.; Hampton, Thomas H.; King, Benjamin L. Molecular Biology and Evolution, Vol. 31, Issue 11 https://doi.org/10.1093/molbev/msu241	journal	August 2014
Genetic Gene Expression Changes during Environmental Adaptations Tend to Reverse Plastic Changes Even after the Correction for Statistical Nonindependence Ho, Wei-Chin; Zhang, Jianzhi Molecular Biology and Evolution, Vol. 36, Issue 3 https://doi.org/10.1093/molbev/msz002	journal	January 2019
Fear, food and sexual ornamentation: plasticity of colour development in Trinidadian guppies Ruell, E. W.; Handelsman, C. A.; Hawkins, C. L. Proceedings of the Royal Society B: Biological Sciences, Vol. 280, Issue 1758 https://doi.org/10.1098/rspb.2012.2019	journal	May 2013
Phenotypic and genomic plasticity of alternative male reproductive tactics in sailfin mollies Fraser, Bonnie A.; Janowitz, Ilana; Thairu, Margaret Proceedings of the Royal Society B: Biological Sciences, Vol. 281, Issue 1781 https://doi.org/10.1098/rspb.2013.2310	journal	April 2014
Genotype–phenotype mapping and the end of the ‘genes as blueprint’ metaphor Pigliucci, Massimo Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 365, Issue 1540 https://doi.org/10.1098/rstb.2009.0241	journal	February 2010
Convergence in pigmentation at multiple levels: mutations, genes and function Manceau, Marie; Domingues, Vera S.; Linnen, Catherine R. Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 365, Issue 1552 https://doi.org/10.1098/rstb.2010.0104	journal	August 2010
A direct approach to false discovery rates Storey, John D. Journal of the Royal Statistical Society: Series B (Statistical Methodology), Vol. 64, Issue 3 https://doi.org/10.1111/1467-9868.00346	journal	August 2002
Large scale maximum average power multiple inference on time‐course count data with application to RNA‐seq analysis Cao, Meng; Zhou, Wen; Breidt, F. Jay Biometrics, Vol. 76, Issue 1 https://doi.org/10.1111/biom.13144	journal	November 2019
Signatures of selection in embryonic transcriptomes of lizards adapting in parallel to cool climate: SIGNATURES OF SELECTION IN LIZARD TRANSCRIPTOMES Feiner, Nathalie; Rago, Alfredo; While, Geoffrey M. Evolution, Vol. 72, Issue 1 https://doi.org/10.1111/evo.13397	journal	December 2017
Emergent buffering balances evolvability and robustness in the evolution of phenotypic flexibility Badyaev, Alexander V.; Morrison, Erin S. Evolution, Vol. 72, Issue 3 https://doi.org/10.1111/evo.13441	journal	February 2018
Phenotypic plasticity facilitates initial colonization of a novel environment Wang, Sheng Pei; Althoff, David M. Evolution, Vol. 73, Issue 2 https://doi.org/10.1111/evo.13676	journal	January 2019
Adaptive versus non-adaptive phenotypic plasticity and the potential for contemporary adaptation in new environments Ghalambor, C. K.; McKAY, J. K.; Carroll, S. P. Functional Ecology, Vol. 21, Issue 3 https://doi.org/10.1111/j.1365-2435.2007.01283.x	journal	June 2007
Diet quality and prey selectivity correlate with life histories and predation regime in Trinidadian guppies: Diet correlates with life histories in guppy Zandonà, Eugenia; Auer, Sonya K.; Kilham, Susan S. Functional Ecology, Vol. 25, Issue 5 https://doi.org/10.1111/j.1365-2435.2011.01865.x	journal	May 2011
Fine-scale local adaptation in life histories along a continuous environmental gradient in Trinidadian guppies: Fine-scale local adaptation in guppies Torres Dowdall, Julián; Handelsman, Corey A.; Ruell, Emily W. Functional Ecology, Vol. 26, Issue 3 https://doi.org/10.1111/j.1365-2435.2012.01980.x	journal	March 2012
Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies Willing, Eva-Maria; Bentzen, Paul; van OOSTERHOUT, Cock Molecular Ecology, Vol. 19, Issue 5 https://doi.org/10.1111/j.1365-294X.2010.04528.x	journal	March 2010
Population genetic analysis of microsatellite variation of guppies ( Poecilia reticulata ) in Trinidad and Tobago: evidence for a dynamic source-sink metapopulation structure, founder events and population bottlenecks Barson, N. J.; Cable, J.; Van Oosterhout, C. Journal of Evolutionary Biology, Vol. 22, Issue 3 https://doi.org/10.1111/j.1420-9101.2008.01675.x	journal	March 2009
Adaptation to an extraordinary environment by evolution of phenotypic plasticity and genetic assimilation Lande, R. Journal of Evolutionary Biology, Vol. 22, Issue 7 https://doi.org/10.1111/j.1420-9101.2009.01754.x	journal	July 2009
The genetic and environmental basis of adaptive differences in shoaling behaviour among populations of Trinidadian guppies, Poecilia reticulata Huizinga, M.; Ghalambor, C. K.; Reznick, D. N. Journal of Evolutionary Biology, Vol. 22, Issue 9 https://doi.org/10.1111/j.1420-9101.2009.01799.x	journal	September 2009
Population Differences in the Schooling Behaviour of Newborn Guppies, Poecilia reticulata Magurran, Anne E.; Seghers, Benoni H. Ethology, Vol. 84, Issue 4 https://doi.org/10.1111/j.1439-0310.1990.tb00807.x	journal	January 1990
The optimal discovery procedure: a new approach to simultaneous significance testing Storey, John D. Journal of the Royal Statistical Society: Series B (Statistical Methodology), Vol. 69, Issue 3 https://doi.org/10.1111/j.1467-9868.2007.005592.x	journal	June 2007
LIFE‐HISTORY EVOLUTION IN GUPPIES ( POECILIA RETICULATA ): 1. PHENOTYPIC AND GENETIC CHANGES IN AN INTRODUCTION EXPERIMENT Reznick, David N.; Bryga, Heather Evolution, Vol. 41, Issue 6 https://doi.org/10.1111/j.1558-5646.1987.tb02474.x	journal	November 1987
MITOCHONDRIAL DNA SEQUENCE VARIATION AMONG NATURAL POPULATIONS OF THE TRINIDAD GUPPY, POECILIA RETICULATA Fajen, Ava; Breden, Felix Evolution, Vol. 46, Issue 5 https://doi.org/10.1111/j.1558-5646.1992.tb01136.x	journal	October 1992
Convergence, Adaptation, and Constraint Losos, Jonathan B. Evolution, Vol. 65, Issue 7 https://doi.org/10.1111/j.1558-5646.2011.01289.x	journal	April 2011
Parallel and Nonparallel Aspects of Ecological, Phenotypic, and Genetic Divergence Across Replicate Population Pairs of lake and Stream Stickleback: Parallel and Non-Parallel Evolution Kaeuffer, Renaud; Peichel, Catherine L.; Bolnick, Daniel I. Evolution, Vol. 66, Issue 2 https://doi.org/10.1111/j.1558-5646.2011.01440.x	journal	September 2011
Phenotypic Plasticity Facilitates Mutational Variance, Genetic Variance, and Evolvability Along the Major axis of Environmental Variation: Phenotypic Plasticity Facilitates Mutational Variance, Genetic Variance, and Evolvability Draghi, Jeremy A.; Whitlock, Michael C. Evolution, Vol. 66, Issue 9 https://doi.org/10.1111/j.1558-5646.2012.01649.x	journal	May 2012
LOCAL ADAPTATION AND THE EVOLUTION OF PHENOTYPIC PLASTICITY IN TRINIDADIAN GUPPIES ( POECILIA RETICULATA ): ADAPTATION AND THE EVOLUTION OF PHENOTYPIC PLASTICITY Torres-Dowdall, Julián; Handelsman, Corey A.; Reznick, David N. Evolution, Vol. 66, Issue 11 https://doi.org/10.1111/j.1558-5646.2012.01694.x	journal	June 2012
Picking personalities apart: estimating the influence of predation, sex and body size on boldness in the guppy Poecilia reticulata Harris, Sanna; Ramnarine, Indar W.; Smith, Henrik G. Oikos, Vol. 119, Issue 11 https://doi.org/10.1111/j.1600-0706.2010.18028.x	journal	April 2010
The Covariance between Genetic and Environmental Influences across Ecological Gradients: Reassessing the Evolutionary Significance of Countergradient and Cogradient Variation Conover, David O.; Duffy, Tara A.; Hice, Lyndie A. Annals of the New York Academy of Sciences, Vol. 1168, Issue 1 https://doi.org/10.1111/j.1749-6632.2009.04575.x	journal	June 2009
Does plasticity enhance or dampen phenotypic parallelism? A test with three lake–stream stickleback pairs Oke, K. B.; Bukhari, M.; Kaeuffer, R. Journal of Evolutionary Biology, Vol. 29, Issue 1 https://doi.org/10.1111/jeb.12767	journal	October 2015
Plasticity and evolution in correlated suites of traits Fischer, E. K.; Ghalambor, C. K.; Hoke, K. L. Journal of Evolutionary Biology, Vol. 29, Issue 5 https://doi.org/10.1111/jeb.12839	journal	February 2016
Parsing parallel evolution: ecological divergence and differential gene expression in the adaptive radiations of thick-lipped Midas cichlid fishes from Nicaragua Manousaki, Tereza; Hull, Pincelli M.; Kusche, Henrik Molecular Ecology, Vol. 22, Issue 3 https://doi.org/10.1111/mec.12034	journal	October 2012
Shared selective pressure and local genomic landscape lead to repeatable patterns of genomic divergence in sunflowers Renaut, Sebastien; Owens, Gregory L.; Rieseberg, Loren H. Molecular Ecology, Vol. 23, Issue 2 https://doi.org/10.1111/mec.12600	journal	December 2013
Population genomics of natural and experimental populations of guppies ( Poecilia reticulata ) Fraser, Bonnie A.; Künstner, Axel; Reznick, David N. Molecular Ecology, Vol. 24, Issue 2 https://doi.org/10.1111/mec.13022	journal	January 2015
RNA-seq reveals regional differences in transcriptome response to heat stress in the marine snail Chlorostoma funebralis Gleason, Lani U.; Burton, Ronald S. Molecular Ecology, Vol. 24, Issue 3 https://doi.org/10.1111/mec.13047	journal	January 2015
Phenotypic plasticity in gene expression contributes to divergence of locally adapted populations of Fundulus heteroclitus Dayan, David I.; Crawford, Douglas L.; Oleksiak, Marjorie F. Molecular Ecology, Vol. 24, Issue 13 https://doi.org/10.1111/mec.13188	journal	May 2015
Gene expression plasticity in response to salinity acclimation in threespine stickleback ecotypes from different salinity habitats Gibbons, Taylor C.; Metzger, David C. H.; Healy, Timothy M. Molecular Ecology, Vol. 26, Issue 10 https://doi.org/10.1111/mec.14065	journal	March 2017
Evolution of the Gene Network Underlying Wing Polyphenism in Ants Abouheif, E. Science, Vol. 297, Issue 5579 https://doi.org/10.1126/science.1071468	journal	July 2002
Homoplasy: From Detecting Pattern to Determining Process and Mechanism of Evolution Wake, D. B.; Wake, M. H.; Specht, C. D. Science, Vol. 331, Issue 6020 https://doi.org/10.1126/science.1188545	journal	February 2011
(Non)Parallel Evolution Bolnick, Daniel I.; Barrett, Rowan D. H.; Oke, Krista B. Annual Review of Ecology, Evolution, and Systematics, Vol. 49, Issue 1 https://doi.org/10.1146/annurev-ecolsys-110617-062240	journal	November 2018
Variable gene transcription underlies phenotypic convergence of hypoxia tolerance in sculpins Mandic, Milica; Ramon, Marina L.; Gerstein, Aleeza C. BMC Evolutionary Biology, Vol. 18, Issue 1 https://doi.org/10.1186/s12862-018-1275-1	journal	November 2018
Parallel evolution of storage roots in morning glories (Convolvulaceae) Eserman, Lauren A.; Jarret, Robert L.; Leebens-Mack, James H. BMC Plant Biology, Vol. 18, Issue 1 https://doi.org/10.1186/s12870-018-1307-4	journal	May 2018
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 Love, Michael I.; Huber, Wolfgang; Anders, Simon Genome Biology, Vol. 15, Issue 12 https://doi.org/10.1186/s13059-014-0550-8	journal	December 2014
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads Song, Li; Florea, Liliana GigaScience, Vol. 4, Issue 1 https://doi.org/10.1186/s13742-015-0089-y	journal	October 2015
The biological importance of measuring individual variation Crawford, Douglas L.; Oleksiak, Marjorie F. Journal of Experimental Biology, Vol. 210, Issue 9 https://doi.org/10.1242/jeb.005454	journal	May 2007
Genetically and environmentally mediated divergence in lateral line morphology in the Trinidadian guppy ( Poecilia reticulata ) Fischer, Eva K.; Soares, Daphne; Archer, Kathryn R. Journal of Experimental Biology https://doi.org/10.1242/jeb.081349	journal	January 2013
Fitting Linear Mixed-Effects Models Using lme4 Bates, Douglas; Mächler, Martin; Bolker, Ben Journal of Statistical Software, Vol. 67, Issue 1 https://doi.org/10.18637/jss.v067.i01	journal	January 2015
Optimal Tests Shrinking Both Means and Variances Applicable to Microarray Data Analysis Hwang, J. T. Gene; Liu, Peng Statistical Applications in Genetics and Molecular Biology, Vol. 9, Issue 1 https://doi.org/10.2202/1544-6115.1587	journal	January 2010
Structure of a Tropical Stream Fish Community: A Role for Biotic Interactions Gilliam, James F.; Fraser, Douglas F.; Alkins-Koo, Mary Ecology, Vol. 74, Issue 6 https://doi.org/10.2307/1939943	journal	September 1993

Similar Records

Nonparallel transcriptional divergence during parallel adaptation

Journal Article · 2021 · Molecular Ecology · OSTI ID:1805096

Electron holographic observations at boundaries aligned parallel and nonparallel to the incident beam

Journal Article · 1999 · Materials Characterization · OSTI ID:684341

Transcription factor binding divergence drives transcriptional and phenotypic variation in maize

Journal Article · 2025 · Nature Plants (Online) · OSTI ID:3002496

Related Subjects

Biochemistry & Molecular Biology
Environmental Sciences & Ecology
Evolutionary Biology

Nonparallel transcriptional divergence during parallel adaptation

Citation Formats

References (90)

Similar Records

Related Subjects