Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants

Journal Article · · Nature Genetics

Not provided.

Research Organization:
Salk Institute for Biological Studies, La Jolla, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC)
DOE Contract Number:
FG02-04ER15517
OSTI ID:
1849498
Journal Information:
Nature Genetics, Vol. 53, Issue 7; ISSN 1061-4036
Publisher:
Nature Publishing Group
Country of Publication:
United States
Language:
English

References (60)

PIFs: Systems Integrators in Plant Development journal January 2014
Expanding Roles of PIFs in Signal Integration from Multiple Processes journal August 2017
Transcription factor PIF4 controls the thermosensory activation of flowering journal March 2012
HISTONE DEACETYLASE 9 stimulates auxin-dependent thermomorphogenesis in Arabidopsis thaliana by mediating H2A.Z depletion journal November 2019
Deposition of Histone Variant H2A.Z within Gene Bodies Regulates Responsive Genes journal October 2012
Dual Role of the Histone Variant H2A.Z in Transcriptional Regulation of Stress-Response Genes journal March 2017
Phytochromes: An Atomic Perspective on Photoactivation and Signaling journal December 2014
Phytochrome evolution in 3D: deletion, duplication, and diversification journal November 2019
Shade avoidance journal August 2008
Shade Avoidance journal January 2012
Linear relationship between phytochrome photoequilibrium and growth in plants under simulated natural radiation journal July 1976
Linking photoreceptor excitation to changes in plant architecture journal April 2012
An RNA thermoswitch regulates daytime growth in Arabidopsis journal April 2020
Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling: PIF4 and PIF5 control auxin signaling journal June 2012
Genome-Wide Analysis of Genes Targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during Seed Germination in Arabidopsis   journal February 2009
Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses journal July 2012
A Quartet of PIF bHLH Factors Provides a Transcriptionally Centered Signaling Hub That Regulates Seedling Morphogenesis through Differential Expression-Patterning of Shared Target Genes in Arabidopsis journal January 2013
Shade avoidance responses are mediated by the ATHB-2 HD-zip protein, a negative regulator of gene expression journal October 1999
A dynamic balance between gene activation and repression regulates the shade avoidance response in Arabidopsis journal December 2005
Over-expression of CONSTANS-LIKE 5 can induce flowering in short-day grown Arabidopsis journal June 2009
Acetylation & Co: an expanding repertoire of histone acylations regulates chromatin and transcription journal April 2019
Histone Acetyltransferases in Plant Development and Plasticity journal March 2014
Removal of H2A.Z by INO 80 promotes homologous recombination journal July 2015
INO80 exchanges H2A.Z for H2A by translocating on DNA proximal to histone dimers journal June 2017
Global Regulation of H2A.Z Localization by the INO80 Chromatin-Remodeling Enzyme Is Essential for Genome Integrity journal January 2011
Anp32e, a higher eukaryotic histone chaperone directs preferential recognition for H2A.Z journal March 2014
ANP32E is a histone chaperone that removes H2A.Z from chromatin journal January 2014
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks journal September 2008
PHYTOCHROME INTERACTING FACTOR 7 is important for early responses to elevated temperature in Arabidopsis seedlings journal November 2019
Phytochromes function as thermosensors in Arabidopsis journal October 2016
Phytochrome B integrates light and temperature signals in Arabidopsis journal October 2016
Phytochrome-mediated inhibition of shade avoidance involves degradation of growth-promoting bHLH transcription factors: PIF stability regulates shade avoidance journal October 2007
The Basic Helix-Loop-Helix Transcription Factor PIF5 Acts on Ethylene Biosynthesis and Phytochrome Signaling by Distinct Mechanisms journal December 2007
The Arabidopsis Phytochrome-Interacting Factor PIF7, Together with PIF3 and PIF4, Regulates Responses to Prolonged Red Light by Modulating phyB Levels journal February 2008
Multiple Phytochrome-Interacting bHLH Transcription Factors Repress Premature Seedling Photomorphogenesis in Darkness journal December 2008
Arabidopsis actin-related protein ARP5 in multicellular development and DNA repair journal November 2009
Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation journal July 2007
Tyrosine phosphorylation controls brassinosteroid receptor activation by triggering membrane release of its kinase inhibitor journal February 2011
Modes of intercellular transcription factor movement in the Arabidopsis apex journal August 2003
The 35S promoter used in a selectable marker gene of a plant transformation vector affects the expression of the transgene journal January 2005
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana journal December 1998
Tyrosine Phosphorylation Regulates the Activity of Phytochrome Photoreceptors journal June 2013
PIF transcription factors link a neighbor threat cue to accelerated reproduction in Arabidopsis journal September 2019
Immunocytochemical techniques for whole-mount in situ protein localization in plants journal June 2006
Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP) journal February 2010
Aligning Short Sequencing Reads with Bowtie journal December 2010
A transcription factor hierarchy defines an environmental stress response network journal November 2016
STAR: ultrafast universal RNA-seq aligner journal October 2012
A clustering approach for identification of enriched domains from histone modification ChIP-Seq data journal June 2009
BEDTools: a flexible suite of utilities for comparing genomic features journal January 2010
High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints journal August 2012
MEME-ChIP: motif analysis of large DNA datasets journal April 2011
The Sequence Alignment/Map format and SAMtools journal June 2009
DAVID: Database for Annotation, Visualization, and Integrated Discovery journal January 2003
CEAS: cis-regulatory element annotation system journal August 2009
deepTools: a flexible platform for exploring deep-sequencing data journal May 2014
The Human Genome Browser at UCSC journal May 2002
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation journal May 2010
Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis journal May 2008
Structural basis for ATP-dependent chromatin remodelling by the INO80 complex journal April 2018