A threonine zipper that mediates protein?protein interactions: Structure and prediction

Oi, Curran; Treado, John D.; Levine, Zachary A.; Lim, Christopher S.; Knecht, Kirsten M.; Xiong, Yong; O'Hern, Corey S.; Regan, Lynne

doi:10.1002/pro.3505

A threonine zipper that mediates protein?protein interactions: Structure and prediction

Journal Article · 01 November 2018 · Protein Sci.

DOI:https://doi.org/10.1002/pro.3505· OSTI ID:1847679

Oi, Curran; Treado, John D.; Levine, Zachary A.; Lim, Christopher S.; Knecht, Kirsten M.; Xiong, Yong; O'Hern, Corey S.; Regan, Lynne

Research Organization:: Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)

Sponsoring Organization:: DOE - Office Of Science; National Institutes of Health (NIH)

OSTI ID:: 1847679

Journal Information:: Protein Sci., Vol. 27, Issue (11)

Country of Publication:: United States

Language:: ENGLISH

References (24)

Guidelines for Protein Design: The Energetics of beta Sheet Side Chain Interactions Smith, C. K.; Regan, L. Science, Vol. 270, Issue 5238 https://doi.org/10.1126/science.270.5238.980	journal	November 1995
Computational Design of Proteins Targeting the Conserved Stem Region of Influenza Hemagglutinin Fleishman, S. J.; Whitehead, T. A.; Ekiert, D. C. Science, Vol. 332, Issue 6031 https://doi.org/10.1126/science.1202617	journal	May 2011
Computational design of a symmetric homodimer using -strand assembly Stranges, P. B.; Machius, M.; Miley, M. J. Proceedings of the National Academy of Sciences, Vol. 108, Issue 51 https://doi.org/10.1073/pnas.1115124108	journal	December 2011
Specificity versus stability in computational protein design Bolon, Daniel N.; Grant, Robert A.; Baker, Tania A. Proceedings of the National Academy of Sciences, Vol. 102, Issue 36 https://doi.org/10.1073/pnas.0506124102	journal	August 2005
Anatomy of hot spots in protein interfaces Bogan, Andrew A.; Thorn, Kurt S. Journal of Molecular Biology, Vol. 280, Issue 1 https://doi.org/10.1006/jmbi.1998.1843	journal	July 1998
Protein-protein interactions: General trends in the relationship between binding affinity and interfacial buried surface area: Protein-protein Interactions Chen, Jieming; Sawyer, Nicholas; Regan, Lynne Protein Science, Vol. 22, Issue 4 https://doi.org/10.1002/pro.2230	journal	February 2013
Amino Acid Pairing Preferences in Parallel β-Sheets in Proteins Fooks, H. M.; Martin, A. C. R.; Woolfson, D. N. Journal of Molecular Biology, Vol. 356, Issue 1 https://doi.org/10.1016/j.jmb.2005.11.008	journal	February 2006
Determinants of strand register in antiparallel β-sheets of proteins Hutchinson, E. Gail; Sessions, Richard B.; Thornton, Janet M. Protein Science, Vol. 7, Issue 11 https://doi.org/10.1002/pro.5560071106	journal	November 1998
Protein–protein interaction through β-strand addition Remaut, Han; Waksman, Gabriel Trends in Biochemical Sciences, Vol. 31, Issue 8 https://doi.org/10.1016/j.tibs.2006.06.007	journal	August 2006
A Thermodynamic Scale for the .beta.-Sheet Forming Tendencies of the Amino Acids Smith, Catherine K.; Withka, Jane M.; Regan, Lynne Biochemistry, Vol. 33, Issue 18 https://doi.org/10.1021/bi00184a020	journal	May 1994
The Power of Hard-Sphere Models: Explaining Side-Chain Dihedral Angle Distributions of Thr and Val Zhou, Alice Qinhua; O'Hern, Corey S.; Regan, Lynne Biophysical Journal, Vol. 102, Issue 10 https://doi.org/10.1016/j.bpj.2012.01.061	journal	May 2012
A Green-emitting Fluorescent Protein from Galaxeidae Coral and Its Monomeric Version for Use in Fluorescent Labeling Karasawa, Satoshi; Araki, Toshio; Yamamoto-Hino, Miki Journal of Biological Chemistry, Vol. 278, Issue 36 https://doi.org/10.1074/jbc.M304063200	journal	June 2003
Steric interactions determine side-chain conformations in protein cores Caballero, D.; Virrueta, A.; O'Hern, C. S. Protein Engineering Design and Selection, Vol. 29, Issue 9 https://doi.org/10.1093/protein/gzw027	journal	July 2016
Comparing side chain packing in soluble proteins, protein‐protein interfaces, and transmembrane proteins Gaines, J. C.; Acebes, S.; Virrueta, A. Proteins: Structure, Function, and Bioinformatics, Vol. 86, Issue 5 https://doi.org/10.1002/prot.25479	journal	February 2018
Random close packing in protein cores Gaines, Jennifer C.; Smith, W. Wendell; Regan, Lynne Physical Review E, Vol. 93, Issue 3 https://doi.org/10.1103/PhysRevE.93.032415	journal	March 2016
Likelihood-enhanced fast translation functions McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Storoni, Laurent C. Acta Crystallographica Section D Biological Crystallography, Vol. 61, Issue 4 https://doi.org/10.1107/S0907444905001617	journal	March 2005
Coot model-building tools for molecular graphics Emsley, Paul; Cowtan, Kevin Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 12, p. 2126-2132 https://doi.org/10.1107/S0907444904019158	journal	November 2004
Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation 1 1Edited by J. Thornton Word, J. Michael; Lovell, Simon C.; Richardson, Jane S. Journal of Molecular Biology, Vol. 285, Issue 4 https://doi.org/10.1006/jmbi.1998.2401	journal	January 1999
GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation Hess, Berk; Kutzner, Carsten; van der Spoel, David Journal of Chemical Theory and Computation, Vol. 4, Issue 3 https://doi.org/10.1021/ct700301q	journal	February 2008
CHARMM36m: an improved force field for folded and intrinsically disordered proteins Huang, Jing; Rauscher, Sarah; Nawrocki, Grzegorz Nature Methods, Vol. 14, Issue 1 https://doi.org/10.1038/nmeth.4067	journal	November 2016
Comparison of simple potential functions for simulating liquid water Jorgensen, William L.; Chandrasekhar, Jayaraman; Madura, Jeffry D. The Journal of Chemical Physics, Vol. 79, Issue 2 https://doi.org/10.1063/1.445869	journal	July 1983
A smooth particle mesh Ewald method Essmann, Ulrich; Perera, Lalith; Berkowitz, Max L. The Journal of Chemical Physics, Vol. 103, Issue 19 https://doi.org/10.1063/1.470117	journal	November 1995
Canonical dynamics: Equilibrium phase-space distributions Hoover, William G. Physical Review A, Vol. 31, Issue 3 https://doi.org/10.1103/PhysRevA.31.1695	journal	March 1985
Canonical sampling through velocity rescaling Bussi, Giovanni; Donadio, Davide; Parrinello, Michele The Journal of Chemical Physics, Vol. 126, Issue 1 https://doi.org/10.1063/1.2408420	journal	January 2007

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