Members of the vertebrate contactin and amyloid precursor protein families interact through a conser

Karuppan, Sebastian J.; Vogt, Alex; Fischer, Zachary; Ladutska, Aliona; Swiastyn, Jonathan; McGraw, Hillary F.; Bouyain, Samuel

doi:10.1016/j.jbc.2021.101541

Members of the vertebrate contactin and amyloid precursor protein families interact through a conser

Journal Article · 31 January 2022 · J. Biol. Chem.

DOI:https://doi.org/10.1016/j.jbc.2021.101541· OSTI ID:1844618

Karuppan, Sebastian J.; Vogt, Alex; Fischer, Zachary; Ladutska, Aliona; Swiastyn, Jonathan; McGraw, Hillary F.; Bouyain, Samuel

Research Organization:: Advanced Photon Source (APS), Argonne National Laboratory (ANL), Argonne, IL (US)

Sponsoring Organization:: DOE - Office Of Science; NIH

OSTI ID:: 1844618

Journal Information:: J. Biol. Chem., Journal Name: J. Biol. Chem. Journal Issue: (2) Vol. 298

Country of Publication:: United States

Language:: ENGLISH

References (58)

Identification of Vascular and Hematopoietic Genes Downstream of etsrp by Deep Sequencing in Zebrafish Gomez, Gustavo; Lee, Jae-Hyung; Veldman, Matthew B. PLoS ONE, Vol. 7, Issue 3 https://doi.org/10.1371/journal.pone.0031658	journal	March 2012
Interaction of amyloid precursor protein with contactins and NgCAM in the retinotectal system Osterfield, M.; Egelund, R.; Young, L. M. Development, Vol. 135, Issue 6 https://doi.org/10.1242/dev.007401	journal	February 2008
Not just amyloid: physiological functions of the amyloid precursor protein family Müller, Ulrike C.; Deller, Thomas; Korte, Martin Nature Reviews Neuroscience, Vol. 18, Issue 5 https://doi.org/10.1038/nrn.2017.29	journal	March 2017
Complex formation of APP with GABAB receptors links axonal trafficking to amyloidogenic processing Dinamarca, Margarita C.; Raveh, Adi; Schneider, Andy Nature Communications, Vol. 10, Issue 1 https://doi.org/10.1038/s41467-019-09164-3	journal	March 2019
Tol2 gene trap integrations in the zebrafish amyloid precursor protein genes appa and aplp2 reveal accumulation of secreted APP at the embryonic veins Liao, Hsin-Kai; Wang, Ying; Noack Watt, Kristin E. Developmental Dynamics, Vol. 241, Issue 2 https://doi.org/10.1002/dvdy.23725	journal	January 2012
Features and development of Coot Emsley, P.; Lohkamp, B.; Scott, W. G. Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 4 https://doi.org/10.1107/S0907444910007493	journal	March 2010
[20] Processing of X-ray diffraction data collected in oscillation mode Otwinowski, Zbyszek; Minor, Wladek Macromolecular Crystallography Part A, 307-326 https://doi.org/10.1016/S0076-6879(97)76066-X	book	January 1997
Deconstruction of the beaten Path-Sidestep interaction network provides insights into neuromuscular system development Li, Hanqing; Watson, Ash; Olechwier, Agnieszka eLife, Vol. 6 https://doi.org/10.7554/eLife.28111	journal	August 2017
Distribution of an APP homolog, APLP2, in the mouse olfactory system: a potential role for APLP2 in axogenesis Thinakaran, G.; Kitt, Ca; Roskams, Aj The Journal of Neuroscience, Vol. 15, Issue 10 https://doi.org/10.1523/JNEUROSCI.15-10-06314.1995	journal	October 1995
An Extracellular Interactome of Immunoglobulin and LRR Proteins Reveals Receptor-Ligand Networks Özkan, Engin; Carrillo, Robert A.; Eastman, Catharine L. Cell, Vol. 154, Issue 1 https://doi.org/10.1016/j.cell.2013.06.006	journal	July 2013
Cxcl12/Cxcr4 chemokine signaling is required for placode assembly and sensory axon pathfinding in the zebrafish olfactory system Miyasaka, Nobuhiko; Knaut, Holger; Yoshihara, Yoshihiro Development, Vol. 134, Issue 13 https://doi.org/10.1242/dev.001958	journal	July 2007
Early retinal development in the zebrafish,Danio rerio: Light and electron microscopic analyses Schmitt, Ellen A.; Dowling, John E. The Journal of Comparative Neurology, Vol. 404, Issue 4 https://doi.org/10.1002/(SICI)1096-9861(19990222)404:4<515::AID-CNE8>3.0.CO;2-A	journal	February 1999
Contactin-4 Mediates Axon-Target Specificity and Functional Development of the Accessory Optic System Osterhout, Jessica A.; Stafford, Benjamin K.; Nguyen, Phong L. Neuron, Vol. 86, Issue 4 https://doi.org/10.1016/j.neuron.2015.04.005	journal	May 2015
Structural Basis for Interactions Between Contactin Family Members and Protein-tyrosine Phosphatase Receptor Type G in Neural Tissues Nikolaienko, Roman M.; Hammel, Michal; Dubreuil, Véronique Journal of Biological Chemistry, Vol. 291, Issue 41 https://doi.org/10.1074/jbc.M116.742163	journal	October 2016
TAG-1 can mediate homophilic binding, but neurite outgrowth on TAG-1 requires an L1-like molecule and β1 integrins Felsenfeld, Dan P.; Hynes, Mary A.; Skoler, Karen M. Neuron, Vol. 12, Issue 3 https://doi.org/10.1016/0896-6273(94)90222-4	journal	March 1994
Structural Studies of the Alzheimer’s Amyloid Precursor Protein Copper-binding Domain Reveal How it Binds Copper Ions Kong, Geoffrey K. -W.; Adams, Julian J.; Harris, Hugh H. Journal of Molecular Biology, Vol. 367, Issue 1 https://doi.org/10.1016/j.jmb.2006.12.041	journal	March 2007
Amyloid Precursor-Like Protein 2 deletion-induced retinal synaptopathy related to congenital stationary night blindness: structural, functional and molecular characteristics Dinet, Virginie; Ciccotosto, Giuseppe D.; Delaunay, Kimberley Molecular Brain, Vol. 9, Issue 1 https://doi.org/10.1186/s13041-016-0245-z	journal	June 2016
An optimized system for expression and purification of secreted bacterial proteins Geisbrecht, Brian V.; Bouyain, Samuel; Pop, Mihai Protein Expression and Purification, Vol. 46, Issue 1 https://doi.org/10.1016/j.pep.2005.09.003	journal	March 2006
A time- and cost-efficient system for high-level protein production in mammalian cells Aricescu, A. Radu; Lu, Weixian; Jones, E. Yvonne Acta Crystallographica Section D Biological Crystallography, Vol. 62, Issue 10 https://doi.org/10.1107/S0907444906029799	journal	September 2006
The zebrafish eya1 gene and its expression pattern during embryogenesis Sahly, I.; Andermann, Peter; Petit, C. Development Genes and Evolution, Vol. 209, Issue 7 https://doi.org/10.1007/s004270050270	journal	June 1999
Amyloid Precursor Protein Dimerization and Synaptogenic Function Depend on Copper Binding to the Growth Factor-Like Domain Baumkotter, F.; Schmidt, N.; Vargas, C. Journal of Neuroscience, Vol. 34, Issue 33 https://doi.org/10.1523/JNEUROSCI.0180-14.2014	journal	August 2014
Satb1 Regulates Contactin 5 to Pattern Dendrites of a Mammalian Retinal Ganglion Cell Peng, Yi-Rong; Tran, Nicholas M.; Krishnaswamy, Arjun Neuron, Vol. 95, Issue 4 https://doi.org/10.1016/j.neuron.2017.07.019	journal	August 2017
Structure and biochemical analysis of the heparin-induced E1 dimer of the amyloid precursor protein Dahms, S. O.; Hoefgen, S.; Roeser, D. Proceedings of the National Academy of Sciences, Vol. 107, Issue 12 https://doi.org/10.1073/pnas.0911326107	journal	March 2010
Neural recognition molecule NB-2 of the contactin/F3 subgroup in rat: Specificity in neurite outgrowth-promoting activity and restricted expression in the brain regions Ogawa, Junko; Lee, Suni; Itoh, Kouichi Journal of Neuroscience Research, Vol. 65, Issue 2 https://doi.org/10.1002/jnr.1133	journal	January 2001
Shape Complementarity at Protein/Protein Interfaces Lawrence, Michael C.; Colman, Peter M. Journal of Molecular Biology, Vol. 234, Issue 4 https://doi.org/10.1006/jmbi.1993.1648	journal	December 1993
Stages of embryonic development of the zebrafish Kimmel, Charles B.; Ballard, William W.; Kimmel, Seth R. Developmental Dynamics, Vol. 203, Issue 3 https://doi.org/10.1002/aja.1002030302	journal	July 1995
Inference of Macromolecular Assemblies from Crystalline State Krissinel, Evgeny; Henrick, Kim Journal of Molecular Biology, Vol. 372, Issue 3 https://doi.org/10.1016/j.jmb.2007.05.022	journal	September 2007
Neuronal Ig/Caspr Recognition Promotes the Formation of Axoaxonic Synapses in Mouse Spinal Cord Ashrafi, Soha; Betley, J. Nicholas; Comer, John D. Neuron, Vol. 81, Issue 1 https://doi.org/10.1016/j.neuron.2013.10.060	journal	January 2014
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix Liebschner, Dorothee; Afonine, Pavel V.; Baker, Matthew L. Acta Crystallographica Section D Structural Biology, Vol. 75, Issue 10 https://doi.org/10.1107/S2059798319011471	journal	October 2019
Overview of the CCP 4 suite and current developments Winn, Martyn D.; Ballard, Charles C.; Cowtan, Kevin D. Acta Crystallographica Section D Biological Crystallography, Vol. 67, Issue 4 https://doi.org/10.1107/S0907444910045749	journal	March 2011
High-resolution in situ hybridization to whole-mount zebrafish embryos Thisse, Christine; Thisse, Bernard Nature Protocols, Vol. 3, Issue 1 https://doi.org/10.1038/nprot.2007.514	journal	December 2007
An extracellular biochemical screen reveals that FLRTs and Unc5s mediate neuronal subtype recognition in the retina Visser, Jasper J.; Cheng, Yolanda; Perry, Steven C. eLife, Vol. 4 https://doi.org/10.7554/eLife.08149	journal	December 2015
Secreted amyloid-β precursor protein functions as a GABA _B R1a ligand to modulate synaptic transmission Rice, Heather C.; de Malmazet, Daniel; Schreurs, An Science, Vol. 363, Issue 6423 https://doi.org/10.1126/science.aao4827	journal	January 2019
Zebrafish developmental genetics and central nervous system development Blader, P. Human Molecular Genetics, Vol. 9, Issue 6 https://doi.org/10.1093/hmg/9.6.945	journal	April 2000
Large-scale screening for novel low-affinity extracellular protein interactions Bushell, K. M.; Sollner, C.; Schuster-Boeckler, B. Genome Research, Vol. 18, Issue 4 https://doi.org/10.1101/gr.7187808	journal	March 2008
Mice with Combined Gene Knock-Outs Reveal Essential and Partially Redundant Functions of Amyloid Precursor Protein Family Members Heber, Sabine; Herms, Jochen; Gajic, Vladan The Journal of Neuroscience, Vol. 20, Issue 21 https://doi.org/10.1523/JNEUROSCI.20-21-07951.2000	journal	November 2000
Expanding the Ig Superfamily Code for Laminar Specificity in Retina: Expression and Role of Contactins Yamagata, M.; Sanes, J. R. Journal of Neuroscience, Vol. 32, Issue 41 https://doi.org/10.1523/JNEUROSCI.3193-12.2012	journal	October 2012
iMOSFLM : a new graphical interface for diffraction-image processing with MOSFLM Battye, T. Geoff G.; Kontogiannis, Luke; Johnson, Owen Acta Crystallographica Section D Biological Crystallography, Vol. 67, Issue 4 https://doi.org/10.1107/S0907444910048675	journal	March 2011
The protein tyrosine phosphatases PTPRZ and PTPRG bind to distinct members of the contactin family of neural recognition molecules Bouyain, S.; Watkins, D. J. Proceedings of the National Academy of Sciences, Vol. 107, Issue 6 https://doi.org/10.1073/pnas.0911235107	journal	January 2010
Analyzing the structure and function of neuronal circuits in zebrafish Friedrich, Rainer W.; Genoud, Christel; Wanner, Adrian A. Frontiers in Neural Circuits, Vol. 7 https://doi.org/10.3389/fncir.2013.00071	journal	January 2013
UCSF ChimeraX: Meeting modern challenges in visualization and analysis: UCSF ChimeraX Visualization System Goddard, Thomas D.; Huang, Conrad C.; Meng, Elaine C. Protein Science, Vol. 27, Issue 1 https://doi.org/10.1002/pro.3235	journal	September 2017
APP involvement in retinogenesis of mice Dinet, Virginie; An, Na; Ciccotosto, Giuseppe D. Acta Neuropathologica, Vol. 121, Issue 3 https://doi.org/10.1007/s00401-010-0762-2	journal	October 2010
The PDB_REDO server for macromolecular structure model optimization Joosten, Robbie P.; Long, Fei; Murshudov, Garib N. IUCrJ, Vol. 1, Issue 4 https://doi.org/10.1107/S2052252514009324	journal	May 2014
Molecular Mechanisms of Synaptic Specificity in Developing Neural Circuits Williams, Megan E.; de Wit, Joris; Ghosh, Anirvan Neuron, Vol. 68, Issue 1 https://doi.org/10.1016/j.neuron.2010.09.007	journal	October 2010
BIG-2 Mediates Olfactory Axon Convergence to Target Glomeruli Kaneko-Goto, Tomomi; Yoshihara, Sei-ichi; Miyazaki, Haruko Neuron, Vol. 57, Issue 6 https://doi.org/10.1016/j.neuron.2008.01.023	journal	March 2008
Aβ alters the connectivity of olfactory neurons in the absence of amyloid plaques in vivo Cao, Luxiang; Schrank, Benjamin R.; Rodriguez, Steve Nature Communications, Vol. 3, Issue 1 https://doi.org/10.1038/ncomms2013	journal	January 2012
Development of the Twin-Strep-tag® and its application for purification of recombinant proteins from cell culture supernatants Schmidt, Thomas G. M.; Batz, Lilia; Bonet, Lidia Protein Expression and Purification, Vol. 92, Issue 1 https://doi.org/10.1016/j.pep.2013.08.021	journal	November 2013
How good are my data and what is the resolution? Evans, Philip R.; Murshudov, Garib N. Acta Crystallographica Section D Biological Crystallography, Vol. 69, Issue 7 https://doi.org/10.1107/S0907444913000061	journal	June 2013
The zebrafish reference genome sequence and its relationship to the human genome Howe, Kerstin; Clark, Matthew D.; Torroja, Carlos F. Nature, Vol. 496, Issue 7446 https://doi.org/10.1038/nature12111	journal	April 2013
A Monomeric Chicken IgY Receptor Binds IgY with 2:1 Stoichiometry Taylor, Alexander I.; Beavil, Rebecca L.; Sutton, Brian J. Journal of Biological Chemistry, Vol. 284, Issue 36 https://doi.org/10.1074/jbc.M109.020263	journal	September 2009
Redundancy and divergence in the amyloid precursor protein family Shariati, S. Ali M.; De Strooper, Bart FEBS Letters, Vol. 587, Issue 13 https://doi.org/10.1016/j.febslet.2013.05.026	journal	May 2013
Amyloid precursor protein is required for convergent-extension movements during Zebrafish development Joshi, Powrnima; Liang, Jennifer O.; DiMonte, Kristine Developmental Biology, Vol. 335, Issue 1 https://doi.org/10.1016/j.ydbio.2009.07.041	journal	November 2009
APLP1 Is a Synaptic Cell Adhesion Molecule, Supporting Maintenance of Dendritic Spines and Basal Synaptic Transmission Schilling, Sandra; Mehr, Annika; Ludewig, Susann The Journal of Neuroscience, Vol. 37, Issue 21 https://doi.org/10.1523/JNEUROSCI.1875-16.2017	journal	April 2017
Distinct expression patterns of two zebrafish homologues of the human APP gene during embryonic development Musa, Alberto; Lehrach, Hans; Russo, Vincenzo Development Genes and Evolution, Vol. 211, Issue 11 https://doi.org/10.1007/s00427-001-0189-9	journal	December 2001
Synaptic Specificity, Recognition Molecules, and Assembly of Neural Circuits Sanes, Joshua R.; Zipursky, S. Lawrence Cell, Vol. 181, Issue 3 https://doi.org/10.1016/j.cell.2020.04.008	journal	April 2020
Expression of olfactory receptors, G-proteins and AxCAMs during the development and maturation of olfactory sensory neurons in the mouse Saito, H.; Mimmack, M.; Kishimoto, J. Developmental Brain Research, Vol. 110, Issue 1 https://doi.org/10.1016/S0165-3806(98)00096-0	journal	September 1998
Defining the binding interface of Amyloid Precursor Protein (APP) and Contactin3 (CNTN3) by site-directed mutagenesis Peng, Xi; Williams, John; Smallwood, Philip M. PLOS ONE, Vol. 14, Issue 7 https://doi.org/10.1371/journal.pone.0219384	journal	July 2019
A cis-complex of NB-2/contactin-5 with amyloid precursor-like protein 1 is localized on the presynaptic membrane Shimoda, Yasushi; Koseki, Fumiya; Itoh, Masaki Neuroscience Letters, Vol. 510, Issue 2 https://doi.org/10.1016/j.neulet.2012.01.026	journal	February 2012

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