X-ray Crystal Structures of Methane Monooxygenase Hydroxylase Complexes with Variants of Its Regulat

Jones, Jason C.; Banerjee, Rahul; Semonis, Manny M.; Shi, Ke; Aihara, Hideki; Lipscomb, John D.

doi:10.1021/acs.biochem.1c00673

X-ray Crystal Structures of Methane Monooxygenase Hydroxylase Complexes with Variants of Its Regulat

Journal Article · 01 December 2021 · Biochemistry-US

DOI:https://doi.org/10.1021/acs.biochem.1c00673· OSTI ID:1839735

Jones, Jason C.; Banerjee, Rahul; Semonis, Manny M.; Shi, Ke; Aihara, Hideki; Lipscomb, John D.

Research Organization:: Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)

Sponsoring Organization:: DOE - Office Of Science; National Institutes of Health (NIH)

OSTI ID:: 1839735

Journal Information:: Biochemistry-US, Vol. 61, Issue (1)

Country of Publication:: United States

Language:: ENGLISH

References (48)

Soluble Methane Monooxygenase Banerjee, Rahul; Jones, Jason C.; Lipscomb, John D. Annual Review of Biochemistry, Vol. 88, Issue 1 https://doi.org/10.1146/annurev-biochem-013118-111529	journal	June 2019
Dioxygen Activation in Soluble Methane Monooxygenase Tinberg, Christine E.; Lippard, Stephen J. Accounts of Chemical Research, Vol. 44, Issue 4 https://doi.org/10.1021/ar1001473	journal	April 2011
Large Kinetic Isotope Effects in Methane Oxidation Catalyzed by Methane Monooxygenase: Evidence for C−H Bond Cleavage in a Reaction Cycle Intermediate ^† Nesheim, Jeremy C.; Lipscomb, John D. Biochemistry, Vol. 35, Issue 31 https://doi.org/10.1021/bi960596w	journal	January 1996
Reactions of Methane Monooxygenase Intermediate Q with Derivatized Methanes Ambundo, Edna A.; Friesner, Richard A.; Lippard, Stephen J. Journal of the American Chemical Society, Vol. 124, Issue 30 https://doi.org/10.1021/ja0265759	journal	July 2002
A transient intermediate of the methane monooxygenase catalytic cycle containing an FeIVFeIV cluster Lee, Sang Kyu; Fox, Brian G.; Froland, Wayne A. Journal of the American Chemical Society, Vol. 115, Issue 14 https://doi.org/10.1021/ja00067a086	journal	July 1993
Structure of the key species in the enzymatic oxidation of methane to methanol Banerjee, Rahul; Proshlyakov, Yegor; Lipscomb, John D. Nature, Vol. 518, Issue 7539 https://doi.org/10.1038/nature14160	journal	January 2015
High-Resolution Extended X-ray Absorption Fine Structure Analysis Provides Evidence for a Longer Fe···Fe Distance in the Q Intermediate of Methane Monooxygenase Cutsail, George E.; Banerjee, Rahul; Zhou, Ang Journal of the American Chemical Society, Vol. 140, Issue 48 https://doi.org/10.1021/jacs.8b10313	journal	November 2018
High-Energy-Resolution Fluorescence-Detected X-ray Absorption of the Q Intermediate of Soluble Methane Monooxygenase Castillo, Rebeca G.; Banerjee, Rahul; Allpress, Caleb J. Journal of the American Chemical Society, Vol. 139, Issue 49 https://doi.org/10.1021/jacs.7b09560	journal	November 2017
Nuclear Resonance Vibrational Spectroscopic Definition of the Fe(IV) ₂ Intermediate Q in Methane Monooxygenase and Its Reactivity Jacobs, Ariel Benjamin; Banerjee, Rahul; Deweese, Dory Ellen Journal of the American Chemical Society, Vol. 143, Issue 39 https://doi.org/10.1021/jacs.1c05436	journal	September 2021
Dioxygen Activation by Nonheme Diiron Enzymes: Diverse Dioxygen Adducts, High-Valent Intermediates, and Related Model Complexes Jasniewski, Andrew J.; Que, Lawrence Chemical Reviews, Vol. 118, Issue 5 https://doi.org/10.1021/acs.chemrev.7b00457	journal	December 2017
Steady-state kinetic analysis of soluble methane mono-oxygenase from Methylococcus capsulatus (Bath) Green, J.; Dalton, H. Biochemical Journal, Vol. 236, Issue 1 https://doi.org/10.1042/bj2360155	journal	May 1986
Kinetic and spectroscopic characterization of intermediates and component interactions in reactions of methane monooxygenase from Methylococcus capsulatus (Bath) Liu, Katherine E.; Valentine, Ann M.; Wang, Danli Journal of the American Chemical Society, Vol. 117, Issue 41 https://doi.org/10.1021/ja00146a002	journal	October 1995
Intermediate P* from Soluble Methane Monooxygenase Contains a Diferrous Cluster Banerjee, Rahul; Meier, Katlyn K.; Münck, Eckard Biochemistry, Vol. 52, Issue 25 https://doi.org/10.1021/bi400182y	journal	June 2013
Oxygen Activation Catalyzed by Methane Monooxygenase Hydroxylase Component: Proton Delivery during the O−O Bond Cleavage Steps ^† Lee, Sang-Kyu; Lipscomb, John D. Biochemistry, Vol. 38, Issue 14 https://doi.org/10.1021/bi982712w	journal	April 1999
Revisiting the Mechanism of Dioxygen Activation in Soluble Methane Monooxygenase from M. capsulatus (Bath): Evidence for a Multi-Step, Proton-Dependent Reaction Pathway Tinberg, Christine E.; Lippard, Stephen J. Biochemistry, Vol. 48, Issue 51 https://doi.org/10.1021/bi901672n	journal	December 2009
Cryptic stereospecificity of methane monooxygenase Priestley, N. D.; Floss, H. G.; Froland, W. A. Journal of the American Chemical Society, Vol. 114, Issue 19 https://doi.org/10.1021/ja00045a037	journal	September 1992
Substrate Hydroxylation in Methane Monooxygenase: Quantitative Modeling via Mixed Quantum Mechanics/Molecular Mechanics Techniques Gherman, Benjamin F.; Lippard, Stephen J.; Friesner, Richard A. Journal of the American Chemical Society, Vol. 127, Issue 3 https://doi.org/10.1021/ja049847b	journal	January 2005
Kinetics and Activation Thermodynamics of Methane Monooxygenase Compound Q Formation and Reaction with Substrates ^† Brazeau, Brian J.; Lipscomb, John D. Biochemistry, Vol. 39, Issue 44 https://doi.org/10.1021/bi001473l	journal	November 2000
Key Amino Acid Residues in the Regulation of Soluble Methane Monooxygenase Catalysis by Component B ^† Brazeau, Brian J.; Lipscomb, John D. Biochemistry, Vol. 42, Issue 19 https://doi.org/10.1021/bi027429i	journal	May 2003
Gating Effects of Component B on Oxygen Activation by the Methane Monooxygenase Hydroxylase Component Liu, Yi; Nesheim, Jeremy C.; Lee, Sang-Kyu Journal of Biological Chemistry, Vol. 270, Issue 42 https://doi.org/10.1074/jbc.270.42.24662	journal	October 1995
Structural Studies of the Methylosinus trichosporium OB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex Reveal a Transient Substrate Tunnel Jones, Jason C.; Banerjee, Rahul; Shi, Ke Biochemistry, Vol. 59, Issue 32 https://doi.org/10.1021/acs.biochem.0c00459	journal	July 2020
Small-Molecule Tunnels in Metalloenzymes Viewed as Extensions of the Active Site Banerjee, Rahul; Lipscomb, John D. Accounts of Chemical Research, Vol. 54, Issue 9 https://doi.org/10.1021/acs.accounts.1c00058	journal	April 2021
Soluble Methane Monooxygenase Component Interactions Monitored by ¹⁹ F NMR Jones, Jason C.; Banerjee, Rahul; Shi, Ke Biochemistry, Vol. 60, Issue 25 https://doi.org/10.1021/acs.biochem.1c00293	journal	June 2021
Methane Monooxygenase Component B Mutants Alter the Kinetics of Steps Throughout the Catalytic Cycle ^† Wallar, Bradley J.; Lipscomb, John D. Biochemistry, Vol. 40, Issue 7 https://doi.org/10.1021/bi002298b	journal	February 2001
Methane Monooxygenase Hydroxylase and B Component Interactions ^† Zhang, Jingyan; Wallar, Bradley J.; Popescu, Codrina V. Biochemistry, Vol. 45, Issue 9 https://doi.org/10.1021/bi052256t	journal	March 2006
Residues in Methylosinus trichosporium OB3b Methane Monooxygenase Component B Involved in Molecular Interactions with Reduced- and Oxidized-Hydroxylase Component: A Role for the N-Terminus ^† Chang, Shou-Lin; Wallar, Bradley J.; Lipscomb, John D. Biochemistry, Vol. 40, Issue 32 https://doi.org/10.1021/bi0103462	journal	August 2001
Dioxygen Activation by Enzymes Containing Binuclear Non-Heme Iron Clusters Wallar, Bradley J.; Lipscomb, John D. Chemical Reviews, Vol. 96, Issue 7 https://doi.org/10.1021/cr9500489	journal	January 1996
Unmasking of Deuterium Kinetic Isotope Effects on the Methane Monooxygenase Compound Q Reaction by Site-Directed Mutagenesis of Component B Brazeau, Brian J.; Wallar, Bradley J.; Lipscomb, John D. Journal of the American Chemical Society, Vol. 123, Issue 42 https://doi.org/10.1021/ja016632i	journal	October 2001
Regulation of Methane Monooxygenase Catalysis Based on Size Exclusion and Quantum Tunneling ^† Zheng, Hui; Lipscomb, John D. Biochemistry, Vol. 45, Issue 6 https://doi.org/10.1021/bi051605g	journal	February 2006
Role of the C-Terminal Region of the B Component of Methylosinus trichosporium OB3b Methane Monooxygenase in the Regulation of Oxygen Activation ^† Zhang, Jingyan; Lipscomb, John D. Biochemistry, Vol. 45, Issue 5 https://doi.org/10.1021/bi051721j	journal	February 2006
High-Resolution XFEL Structure of the Soluble Methane Monooxygenase Hydroxylase Complex with its Regulatory Component at Ambient Temperature in Two Oxidation States Srinivas, Vivek; Banerjee, Rahul; Lebrette, Hugo Journal of the American Chemical Society, Vol. 142, Issue 33 https://doi.org/10.1021/jacs.0c05613	journal	July 2020
Control of substrate access to the active site in methane monooxygenase Lee, Seung Jae; McCormick, Michael S.; Lippard, Stephen J. Nature, Vol. 494, Issue 7437 https://doi.org/10.1038/nature11880	journal	February 2013
MOLE 2.0: advanced approach for analysis of biomacromolecular channels Sehnal, David; Svobodová Vařeková, Radka; Berka, Karel Journal of Cheminformatics, Vol. 5, Issue 1 https://doi.org/10.1186/1758-2946-5-39	journal	August 2013
Analysis of Substrate Access to Active Sites in Bacterial Multicomponent Monooxygenase Hydroxylases: X-ray Crystal Structure of Xenon-Pressurized Phenol Hydroxylase from Pseudomonas sp. OX1 McCormick, Michael S.; Lippard, Stephen J. Biochemistry, Vol. 50, Issue 51 https://doi.org/10.1021/bi201248b	journal	December 2011
Moessbauer, EPR, and ENDOR studies of the hydroxylase and reductase components of methane monooxygenase from Methylosinus trichosporium OB3b Fox, Brian G.; Hendrich, Michael P.; Surerus, Kristene K. Journal of the American Chemical Society, Vol. 115, Issue 9 https://doi.org/10.1021/ja00062a039	journal	May 1993
Moessbauer analysis of the binuclear iron site in purple acid phosphatase from pig allantoic fluid Sage, J. T.; Xia, Y. M.; Debrunner, P. G. Journal of the American Chemical Society, Vol. 111, Issue 18 https://doi.org/10.1021/ja00200a052	journal	August 1989
Integer-spin EPR studies of the fully reduced methane monooxygenase hydroxylase component Hendrich, Michael P.; Munck, Eckard; Fox, Brian G. Journal of the American Chemical Society, Vol. 112, Issue 15 https://doi.org/10.1021/ja00171a029	journal	July 1990
Electron Transfer Control in Soluble Methane Monooxygenase Wang, Weixue; Iacob, Roxana E.; Luoh, Rebecca P. Journal of the American Chemical Society, Vol. 136, Issue 27 https://doi.org/10.1021/ja504688z	journal	June 2014
Diiron Oxidation State Control of Substrate Access to the Active Site of Soluble Methane Monooxygenase Mediated by the Regulatory Component Wang, Weixue; Lippard, Stephen J. Journal of the American Chemical Society, Vol. 136, Issue 6 https://doi.org/10.1021/ja412351b	journal	January 2014
Oxidation Reactions Performed by Soluble Methane Monooxygenase Hydroxylase Intermediates H _peroxo and Q Proceed by Distinct Mechanisms Tinberg, Christine E.; Lippard, Stephen J. Biochemistry, Vol. 49, Issue 36 https://doi.org/10.1021/bi1009375	journal	August 2010
Beneath the surface: Evolution of methane activity in the bacterial multicomponent monooxygenases Osborne, Craig D.; Haritos, Victoria S. Molecular Phylogenetics and Evolution, Vol. 139 https://doi.org/10.1016/j.ympev.2019.106527	journal	October 2019
Uncovering a Dynamically Formed Substrate Access Tunnel in Carbon Monoxide Dehydrogenase/Acetyl-CoA Synthase Wang, Po-hung; Bruschi, Maurizio; De Gioia, Luca Journal of the American Chemical Society, Vol. 135, Issue 25 https://doi.org/10.1021/ja403110s	journal	June 2013
Xenon in and at the End of the Tunnel of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-CoA Synthase ^† ^, ^‡ Doukov, Tzanko I.; Blasiak, Leah C.; Seravalli, Javier Biochemistry, Vol. 47, Issue 11 https://doi.org/10.1021/bi702386t	journal	March 2008
Structural Basis of Biological N2O Generation by Bacterial Nitric Oxide Reductase Hino, T.; Matsumoto, Y.; Nagano, S. Science, Vol. 330, Issue 6011 https://doi.org/10.1126/science.1195591	journal	November 2010
The ins and outs of cytochrome P450s Cojocaru, Vlad; Winn, Peter J.; Wade, Rebecca C. Biochimica et Biophysica Acta (BBA) - General Subjects, Vol. 1770, Issue 3 https://doi.org/10.1016/j.bbagen.2006.07.005	journal	March 2007
Evolution of P450 Monooxygenases toward Formation of Transient Channels and Exclusion of Nonproductive Gases Ebert, Maximilian C. C. J. C.; Dürr, Simon L.; A. Houle, Armande ACS Catalysis, Vol. 6, Issue 11 https://doi.org/10.1021/acscatal.6b02154	journal	October 2016
Tunnels modulate ligand flux in a heme nitric oxide/oxygen binding (H-NOX) domain Winter, M. B.; Herzik, M. A.; Kuriyan, J. Proceedings of the National Academy of Sciences, Vol. 108, Issue 43 https://doi.org/10.1073/pnas.1114038108	journal	October 2011
Quantum Mechanical Basis for Kinetic Diameters of Small Gaseous Molecules Mehio, Nada; Dai, Sheng; Jiang, De-en The Journal of Physical Chemistry A, Vol. 118, Issue 6 https://doi.org/10.1021/jp412588f	journal	January 2014

Similar Records

X-ray Crystal Structures of Methane Monooxygenase Hydroxylase Complexes with Variants of Its Regulat

Journal Article · 2021 · Biochemistry-US · OSTI ID:1841248

Jones, Jason C.; Banerjee, Rahul; Semonis, Manny M.; +3 more

X-ray crystal structure of alcohol products bound at the active site of soluble methan monooxygenase hydroxylase

Journal Article · 2001 · J.Am.Chem.Soc.123:1794,2001 · OSTI ID:802554

Whittington, D A

High-Resolution XFEL Structure of the Soluble Methane Monooxygenase Hydroxylase Complex with its Regulatory Component at Ambient Temperature in Two Oxidation States

Journal Article · 2020 · Journal of the American Chemical Society · OSTI ID:1782159

Srinivas, Vivek; Banerjee, Rahul; Lebrette, Hugo; +33 more

X-ray Crystal Structures of Methane Monooxygenase Hydroxylase Complexes with Variants of Its Regulat

Citation Formats

References (48)

Similar Records

Related Subjects