Structural Origins of Altered Spectroscopic Properties upon Ligand Binding in Proteins Containing a

Gleason, Patrick R.; Kolbaba-Kartchner, Bethany; Henderson, J. Nathan; Stahl, Erik P.; Simmons, Chad R.; Mills, Jeremy H.

doi:10.1021/acs.biochem.1c00291

Structural Origins of Altered Spectroscopic Properties upon Ligand Binding in Proteins Containing a

Journal Article · 01 August 2021 · Biochemistry-US

DOI:https://doi.org/10.1021/acs.biochem.1c00291· OSTI ID:1831210

Gleason, Patrick R.; Kolbaba-Kartchner, Bethany; Henderson, J. Nathan; Stahl, Erik P.; Simmons, Chad R.; Mills, Jeremy H.

Research Organization:: Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)

Sponsoring Organization:: DOE - Office Of Science; NIGMS

OSTI ID:: 1831210

Journal Information:: Biochemistry-US, Vol. 60, Issue (34)

Country of Publication:: United States

Language:: ENGLISH

References (40)

Designing logical codon reassignment – Expanding the chemistry in biology No authors listed Chemical Science https://doi.org/10.1039/C4SC01534G		January 2015
A genetically encoded fluorescent amino acid No authors listed Proceedings of the National Academy of Sciences https://doi.org/10.1073/pnas.0603965103		June 2006
A Genetically Encoded Fluorescent Amino Acid No authors listed Journal of the American Chemical Society https://doi.org/10.1021/ja062666k		July 2006
Genetic Incorporation of a Small, Environmentally Sensitive, Fluorescent Probe into Proteins in Saccharomyces cerevisiae No authors listed Journal of the American Chemical Society https://doi.org/10.1021/ja904896s		August 2009
Genetic Incorporation of a Metal-Ion Chelating Amino Acid into Proteins as a Biophysical Probe No authors listed Journal of the American Chemical Society https://doi.org/10.1021/ja808340b		February 2009
Efficient Synthesis and In Vivo Incorporation of Acridon-2-ylalanine, a Fluorescent Amino Acid for Lifetime and Förster Resonance Energy Transfer/Luminescence Resonance Energy Transfer Studies No authors listed Journal of the American Chemical Society https://doi.org/10.1021/ja403247j		December 2013
Engineering a periplasmic binding protein for amino acid sensors with improved binding properties No authors listed Org. Biomol. Chem. https://doi.org/10.1039/C7OB02165H		January 2017
Fluorescence lifetime based distance measurement illustrates conformation changes of PYL10-CL2 upon ABA binding in solution state No authors listed Chinese Chemical Letters https://doi.org/10.1016/j.cclet.2019.01.020		May 2019
An intrinsic FRET sensor of protein–ligand interactions No authors listed Organic & Biomolecular Chemistry https://doi.org/10.1039/D0OB00793E		January 2020
A Genetically Encoded Direct Sensor of Antibody-Antigen Interactions No authors listed ChemBioChem https://doi.org/10.1002/cbic.200900254		September 2009
Genetically Encoded Fluorescent Amino Acid for Monitoring Protein Interactions through FRET No authors listed Analytical Chemistry https://doi.org/10.1021/acs.analchem.9b03305		October 2019
A genetically encoded small-size fluorescent pair reveals allosteric conformational changes of G proteins upon its interaction with GPCRs by fluorescence lifetime based FRET No authors listed Chemical Communications https://doi.org/10.1039/D0CC02691C		January 2020
Asymmetric Allosteric Signaling in Aspartate Transcarbamoylase No authors listed ACS Chemical Biology https://doi.org/10.1021/cb9003207		March 2010
Biosynthesis of a Novel Glutamate Racemase Containing a Site-Specific 7-Hydroxycoumarin Amino Acid: Enzyme–Ligand Promiscuity Revealed at the Atomistic Level No authors listed ACS Central Science https://doi.org/10.1021/acscentsci.5b00211		September 2015
A Fluorescent Reporter of the Phosphorylation Status of the Substrate Protein STAT3 No authors listed Angewandte Chemie https://doi.org/10.1002/ange.201102923		July 2011
Excited-state Reactions of Coumarins in Aqueous Solutions. I. The Phototautomerization of 7-Hydroxycoumarin and Its Derivative No authors listed Bulletin of the Chemical Society of Japan https://doi.org/10.1246/bcsj.56.6		January 1983
Excited-State Reactions of Coumarins. VII. The Solvent-Dependent Fluorescence of 7-Hydroxycoumarins No authors listed Bulletin of the Chemical Society of Japan https://doi.org/10.1246/bcsj.61.1873		June 1988
Excited State Properties of 7-Hydroxy-4-methylcoumarin in the Gas Phase and in Solution. A Theoretical Study No authors listed The Journal of Physical Chemistry A https://doi.org/10.1021/jp0524025		December 2005
Excited-State Proton Transfer in 7-Hydroxy-4-methylcoumarin along a Hydrogen-Bonded Water Wire No authors listed The Journal of Physical Chemistry A https://doi.org/10.1021/jp0662202		December 2006
Structural Insights into How Protein Environments Tune the Spectroscopic Properties of a Noncanonical Amino Acid Fluorophore No authors listed Biochemistry https://doi.org/10.1021/acs.biochem.0c00474		August 2020
At the Interface of Chemical and Biological Synthesis: An Expanded Genetic Code No authors listed Cold Spring Harbor Perspectives in Biology https://doi.org/10.1101/cshperspect.a023945		July 2016
An Enhanced System for Unnatural Amino Acid Mutagenesis in E. coli No authors listed Journal of Molecular Biology https://doi.org/10.1016/j.jmb.2009.10.030		January 2010
A monovalent streptavidin with a single femtomolar biotin binding site No authors listed Nature Methods https://doi.org/10.1038/nmeth861		March 2006
HKL -3000: the integration of data reduction and structure solution – from diffraction images to an initial model in minutes No authors listed Acta Crystallographica Section D Biological Crystallography https://doi.org/10.1107/S0907444906019949		July 2006
iMOSFLM : a new graphical interface for diffraction-image processing with MOSFLM No authors listed Acta Crystallographica Section D Biological Crystallography https://doi.org/10.1107/S0907444910048675		March 2011
An introduction to data reduction: space-group determination, scaling and intensity statistics No authors listed Acta Crystallographica Section D Biological Crystallography https://doi.org/10.1107/S090744491003982X		March 2011
Phaser crystallographic software No authors listed Journal of Applied Crystallography https://doi.org/10.1107/S0021889807021206		July 2007
Refinement of Macromolecular Structures by the Maximum-Likelihood Method No authors listed Acta Crystallographica Section D Biological Crystallography https://doi.org/10.1107/S0907444996012255		May 1997
Coot model-building tools for molecular graphics No authors listed Acta Crystallographica Section D Biological Crystallography https://doi.org/10.1107/S0907444904019158		November 2004
Streptavidin and its biotin complex at atomic resolution No authors listed Acta Crystallographica Section D Biological Crystallography https://doi.org/10.1107/S0907444911027806		August 2011
Structural studies of the streptavidin binding loop: Streptavidin binding loop No authors listed Protein Science https://doi.org/10.1002/pro.5560060604		June 1997
Color Hues in Red Fluorescent Proteins Are Due to Internal Quadratic Stark Effect No authors listed The Journal of Physical Chemistry B https://doi.org/10.1021/jp907085p		October 2009
Crystal structures and mutational analysis of amFP486, a cyan fluorescent protein from Anemonia majano No authors listed Proceedings of the National Academy of Sciences https://doi.org/10.1073/pnas.0502250102		August 2005
Short hydrogen bonds in photoactive yellow protein No authors listed Acta Crystallographica Section D Biological Crystallography https://doi.org/10.1107/S090744490400616X		May 2004
Short Hydrogen Bonds and Proton Delocalization in Green Fluorescent Protein (GFP) No authors listed ACS Central Science https://doi.org/10.1021/acscentsci.5b00160		June 2015
Acid-base properties of 1-naphthol. Proton-induced fluorescence quenching No authors listed The Journal of Physical Chemistry https://doi.org/10.1021/j100448a016		May 1980
Geminate recombination in excited‐state proton‐transfer reactions: Numerical solution of the Debye–Smoluchowski equation with backreaction and comparison with experimental results No authors listed The Journal of Chemical Physics https://doi.org/10.1063/1.454572		May 1988
Self quenching of 1-naphthol. Connection between time-resolved and steady-state measurements No authors listed Chemical Physics https://doi.org/10.1016/0301-0104(94)00098-0		June 1994
Excited-State Proton Transfer: From Constrained Systems to “Super” Photoacids to Superfast Proton Transfer ^† No authors listed Accounts of Chemical Research https://doi.org/10.1021/ar990109f		January 2002
Ultrafast Excited-State Dynamics in the Green Fluorescent Protein Variant S65T/H148D. 3. Short- and Long-Time Dynamics of the Excited-State Proton Transfer ^† No authors listed Biochemistry https://doi.org/10.1021/bi7009053		October 2007

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