Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Oxalate decarboxylase uses electron hole hopping for catalysis

Journal Article · · J. Biol. Chem.

Research Organization:
Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Organization:
DOE - Office Of Science; National Institutes of Health (NIH); National Science Foundation (NSF)
OSTI ID:
1810142
Journal Information:
J. Biol. Chem., Vol. 297, Issue (1)
Country of Publication:
United States
Language:
ENGLISH

References (86)

Proton-Coupled Electron Flow in Protein Redox Machines December 2010
Long-range electron transfer February 2005
Electron transfers in chemistry and biology August 1985
Pathway Analysis of Protein Electron-Transfer Reactions June 1992
Oxygenic photosynthesis: history, status and perspective January 2019
Water oxidation in photosystem II June 2019
Reaction dynamics and proton coupled electron transfer: Studies of tyrosine-based charge transfer in natural and biomimetic systems January 2015
Redox Properties of the Membrane Proteins from the Respiratory Chain August 2020
Hole hopping through tyrosine/tryptophan chains protects proteins from oxidative damage July 2015
Defusing redox bombs? August 2015
Charge Transfer in Dynamical Biosystems, or The Treachery of (Static) Images October 2014
Distance-Independent Charge Recombination Kinetics in Cytochrome c –Cytochrome c Peroxidase Complexes: Compensating Changes in the Electronic Coupling and Reorganization Energies July 2013
Assessing Possible Mechanisms of Micrometer-Scale Electron Transfer in Heme-Free Geobacter sulfurreducens Pili May 2019
Mapping hole hopping escape routes in proteins July 2019
A search for the physical basis of the genetic code July 2020
Charge Transfer between [4Fe4S] Proteins and DNA Is Unidirectional: Implications for Biomolecular Signaling January 2019
Enzymatic oxalate decarboxylation in Aspergillus Niger October 1968
Enzymatic Decarboxylation of Oxalic acid September 1956
Oxalate decarboxylase from Collybia velutipes. Purification, characterization, and cDNA cloning. December 1991
Bacillus subtilis YvrK Is an Acid-Induced Oxalate Decarboxylase January 2000
The YvrI Alternative σ Factor Is Essential for Acid Stress Induction of Oxalate Decarboxylase in Bacillus subtilis February 2009
A previously unidentified σ factor and two accessory proteins regulate oxalate decarboxylase expression in Bacillus subtilis August 2008
Influence of vegetation on low-molecular-weight carboxylic acids in soil solution—a review February 2001
Calcium oxalate in soils, its origins and fate – a review January 2018
Oxalate metabolism.I July 1973
Oxalate metabolism, II August 1973
Oxalate production by fungi: its role in pathogenicity and ecology in the soil environment September 1996
Enhanced resistance to rice blast and sheath blight in rice ( oryza sativa L.) by expressing the oxalate decarboxylase protein Bacisubin from Bacillus subtilis December 2017
Manipulation of oxalate metabolism in plants for improving food quality and productivity February 2019
Enzyme-based control of oxalic acid in the pulp and paper industry August 2008
Oxalate decarboxylase of Trametes versicolor : biochemical characterization and performance in bleaching filtrates from the pulp and paper industry April 2012
14-Day Repeat-Dose Oral Toxicity Evaluation of Oxazyme in Rats and Dogs December 2009
Expression of heterologous oxalate decarboxylase in HEK293 cells confers protection against oxalate induced oxidative stress as a therapeutic approach for calcium oxalate stone disease January 2017
Oxalate-Degrading Enzyme Recombined Lactic Acid Bacteria Strains Reduce Hyperoxaluria March 2018
Designer probiotic Lactobacillus plantarum expressing oxalate decarboxylase developed using group II intron degrades intestinal oxalate in hyperoxaluric rats October 2018
Oxalate Decarboxylase Requires Manganese and Dioxygen for Activity: OVEREXPRESSION AND CHARACTERIZATION OF August 2001
Structure of Oxalate Decarboxylase from Bacillus subtilis at 1.75 Å Resolution , June 2002
A Closed Conformation of Bacillus subtilis Oxalate Decarboxylase OxdC Provides Evidence for the True Identity of the Active Site May 2004
The identity of the active site of oxalate decarboxylase and the importance of the stability of active-site lid conformations1 October 2007
Metal Dependence of Oxalate Decarboxylase Activity June 2009
Oxalate Decarboxylase and Oxalate Oxidase Activities Can Be Interchanged with a Specificity Switch of up to 282 000 by Mutating an Active Site Lid , October 2007
A Structural Element That Facilitates Proton-Coupled Electron Transfer in Oxalate Decarboxylase March 2012
Assigning the EPR Fine Structure Parameters of the Mn(II) Centers in Bacillus subtilis Oxalate Decarboxylase by Site-Directed Mutagenesis and DFT/MM Calculations January 2014
Second-Shell Hydrogen Bond Impacts Transition-State Structure in Bacillus subtilis Oxalate Decarboxylase March 2018
Investigating the roles of putative active site residues in the oxalate decarboxylase from Bacillus subtilis August 2007
Substrate Binding Mode and Molecular Basis of a Specificity Switch in Oxalate Decarboxylase March 2016
Redox Cycling, pH Dependence, and Ligand Effects of Mn(III) in Oxalate Decarboxylase from Bacillus subtilis November 2016
Heavy Atom Isotope Effects on the Reaction Catalyzed by the Oxalate Decarboxylase from Bacillus s ubtilis February 2003
Observation of superoxide production during catalysis of Bacillus subtilis oxalate decarboxylase at pH 4 March 2015
Dissection of the triple tryptophan electron transfer chain in Escherichia coli DNA photolyase: Trp382 is the primary donor in photoactivation June 2003
Exploring Redox Properties of Aromatic Amino Acids in Water: Contrasting Single Photon vs Resonant Multiphoton Ionization in Aqueous Solutions March 2018
Pourbaix Diagram, Proton-Coupled Electron Transfer, and Decay Kinetics of a Protein Tryptophan Radical: Comparing the Redox Properties of W 32 and Y 32 Generated Inside the Structurally Characterized α 3 W and α 3 Y Proteins December 2017
Electrochemical properties of tyrosine phenoxy and tryptophan indolyl radicals in peptides and amino acid analogs April 1991
Electrode Potentials of l -Tryptophan, l -Tyrosine, 3-Nitro- l -tyrosine, 2,3-Difluoro- l -tyrosine, and 2,3,5-Trifluoro- l -tyrosine May 2016
Oxidation potentials and electron donation to photosystem II of manganese complexes containing bicarbonate and carboxylate ligands January 2004
Delocalized Hole Domains in Guanine-Rich DNA Oligonucleotides April 2015
Photoinduced DNA Cleavage via Electron Transfer: Demonstration That Guanine Residues Located 5' to Guanine Are the Most Electron-Donating Sites June 1995
Impact of Local Electrostatics on the Redox Properties of Tryptophan Radicals in Azurin: Implications for Redox-Active Tryptophans in Proton-Coupled Electron Transfer March 2020
Electron Flow through Metalloproteins November 2013
Proton-coupled electron transfer: the mechanistic underpinning for radical transport and catalysis in biology July 2006
Living with Oxygen July 2018
Electron flow through biological molecules: does hole hopping protect proteins from oxidative damage? July 2015
Evidence of a Thermodynamic Ramp for Hole Hopping to Protect a Redox Enzyme from Oxidative Damage March 2019
EPR Spectroscopic Characterization of the Manganese Center and a Free Radical in the Oxalate Decarboxylase Reaction December 2004
Tryptophan tryptophylquinone biosynthesis: A radical approach to posttranslational modification November 2012
Hole Hopping through Tryptophan in Cytochrome P450 July 2017
Biochemistry and Theory of Proton-Coupled Electron Transfer January 2014
Thermochemistry of Proton-Coupled Electron Transfer Reagents and its Implications December 2010
Spectroscopic Comparison of Photogenerated Tryptophan Radicals in Azurin: Effects of Local Environment and Structure June 2010
pH-Dependent Structures of the Manganese Binding Sites in Oxalate Decarboxylase as Revealed by High-Field Electron Paramagnetic Resonance July 2009
Formation of Hexacoordinate Mn(III) in Bacillus subtilis Oxalate Decarboxylase Requires Catalytic Turnover January 2016
Factors Determining the Ligand Field Stabilization Energies of the Hexaaqua 2+ Complexes of the First Transition Series and the Irving-Williams Order October 1995
Aspects of Aqueous Iron and Manganese (II/III) Self-Exchange Electron Transfer Reactions June 2004
Avogadro: an advanced semantic chemical editor, visualization, and analysis platform August 2012
Gaussian Basis Functions for Use in Molecular Calculations. III. Contraction of (10s6p) Atomic Basis Sets for the First‐Row Atoms July 1971
A new hybrid exchange–correlation functional using the Coulomb-attenuating method (CAM-B3LYP) July 2004
The ORCA program system: The ORCA program system June 2011
Software update: the ORCA program system, version 4.0: Software update July 2017
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding May 1976
XDS January 2010
How good are my data and what is the resolution? June 2013
Phaser crystallographic software July 2007
PHENIX: a comprehensive Python-based system for macromolecular structure solution January 2010
Coot model-building tools for molecular graphics November 2004
Features and development of Coot March 2010
MolProbity: More and better reference data for improved all-atom structure validation: PROTEIN SCIENCE.ORG November 2017