Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Kinetic and substrate complex characterization of RamA, a corrinoid protein reductive activase from Methanosarcina barkeri

Journal Article · · FEMS Microbiology Letters (Online)
 [1];  [2];  [3]
  1. Department of Microbiology, The Ohio State University, Columbus, OH 43210, USA; OSTI
  2. Department of Microbiology, The Ohio State University, Columbus, OH 43210, USA
  3. Department of Microbiology, The Ohio State University, Columbus, OH 43210, USA; The Ohio State Biochemistry Program, The Ohio State University, Columbus, OH 43210, USA
ABSTRACT

In microbial corrinoid-dependent methyltransferase systems, adventitious Co(I)-corrinoid oxidation halts catalysis and necessitates repair by ATP-dependent reductive activases. RamA, an activase with a C-terminal ferredoxin domain with two [4Fe-4S] clusters from methanogenic archaea, has been far less studied than the bacterial activases bearing an N-terminal ferredoxin domain with one [2Fe-2S] cluster. These differences suggest RamA might prove to have other distinctive characteristics. Here, we examine RamA kinetics and the stoichiometry of the corrinoid protein:RamA complex. Like bacterial activases, K+ stimulates RamA. Potassium stimulation had been questioned due to differences in the primary structure of bacterial and methanogen activases. Unlike one bacterial activase, ATP is not inhibitory allowing the first determination of apparent kinetic parameters for any corrinoid activase. Unlike bacterial activases, a single RamA monomer complexes a single corrinoid protein monomer. Alanine replacement of a RamA serine residue corresponding to the serine of one bacterial activase which ligates the corrinoid cobalt during complex formation led to only moderate changes in the kinetics of RamA. These results reveal new differences in the two types of corrinoid activases, and provide direct evidence for the proposal that corrinoid activases act as catalytic monomers, unlike other enzymes that couple ATP hydrolysis to difficult reductions.

Research Organization:
The Ohio State Univ., Columbus, OH (United States)
Sponsoring Organization:
USDOE Office of Science (SC)
DOE Contract Number:
FG02-91ER20042;
OSTI ID:
1804034
Journal Information:
FEMS Microbiology Letters (Online), Journal Name: FEMS Microbiology Letters (Online) Journal Issue: 17 Vol. 367; ISSN 1574-6968
Publisher:
Federation of European Microbiological Societies
Country of Publication:
United States
Language:
English

References (52)

The Benzoyl-Coenzyme A Reductase and 2-Hydroxyacyl-Coenzyme A Dehydratase Radical Enzyme Family journal September 2014
Redox potential changes during ATP‐dependent corrinoid reduction determined by redox titrations with europium(II)–DTPA journal August 2019
The Polymerase Incomplete Primer Extension (PIPE) Method Applied to High-Throughput Cloning and Site-Directed Mutagenesis book January 2009
Isolation and characterization of a veratrol:corrinoid protein methyl transferase from Acetobacterium dehalogenans journal May 2001
Cloning, expression, and characterization of a four-component O-demethylase from human intestinal bacterium Eubacterium limosum ZL-II journal May 2016
Measurement of protein using bicinchoninic acid journal October 1985
Involvement of corrinoids in the methylation of coenzyme M (2-mercaptoethanesulfonic acid) by methanol and enzymes from journal August 1983
Acetate synthesis from carbon monoxide by Clostridium thermoaceticum. Purification of the corrinoid protein. journal July 1984
Catalysis of acetyl-CoA cleavage and tetrahydrosarcinapterin methylation by a carbon monoxide dehydrogenase-corrinoid enzyme complex. journal November 1991
Catalysis of Methyl Group Transfers Involving Tetrahydrofolate and B12 book January 2008
Protein Dynamics in the Reductive Activation of a B12-Containing Enzyme journal May 2017
Electron Transfer in Nitrogenase journal January 2020
Cobalamin-Dependent Apparent Intramolecular Methyl Transfer for Biocatalytic Constitutional Isomerization of Catechol Monomethyl Ethers journal April 2019
Assignment of enzymic function to specific protein regions of cobalamin-dependent methionine synthase from Escherichia coli journal September 1993
Complex Formation with the Activator RACo Affects the Corrinoid Structure of CoFeSP journal August 2012
Cobalamin-Dependent Methionine Synthase Is a Modular Protein with Distinct Regions for Binding Homocysteine, Methyltetrahydrofolate, Cobalamin, and Adenosylmethionine † journal July 1997
The Mechanism of Adenosylmethionine-Dependent Activation of Methionine Synthase:  A Rapid Kinetic Analysis of Intermediates in Reductive Methylation of Cob(II)alamin Enzyme † journal September 1998
Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 journal August 1970
Visualizing molecular juggling within a B12-dependent methyltransferase complex journal March 2012
ATP-induced electron transfer by redox-selective partner recognition journal August 2014
NIH Image to ImageJ: 25 years of image analysis journal June 2012
The Phyre2 web portal for protein modeling, prediction and analysis journal May 2015
O-Demethylase from Acetobacterium dehalogenans . Cloning, sequencing, and active expression of the gene encoding the corrinoid protein journal October 1998
Redox-dependent complex formation by an ATP-dependent activator of the corrinoid/iron-sulfur protein journal March 2012
A nonpyrrolysine member of the widely distributed trimethylamine methyltransferase family is a glycine betaine methyltransferase journal October 2014
Retroconversion of estrogens into androgens by bacteria via a cobalamin-mediated methylation journal December 2019
A genetic system for Archaea of the genus Methanosarcina: Liposome-mediated transformation and construction of shuttle vectors journal March 1997
Reconstitution of Monomethylamine:Coenzyme M Methyl Transfer with a Corrinoid Protein and Two Methyltransferases Purified from Methanosarcina barkeri journal June 1997
The Role of an Iron-Sulfur Cluster in an Enzymatic Methylation Reaction: METHYLATION OF CO DEHYDROGENASE/ACETYL-CoA SYNTHASE BY THE METHYLATED CORRINOID IRON-SULFUR PROTEIN journal April 1999
The MtsA Subunit of the Methylthiol:Coenzyme M Methyltransferase of Methanosarcina barkeri Catalyses Both Half-reactions of Corrinoid-dependent Dimethylsulfide: Coenzyme M Methyl Transfer journal November 2000
RamA, a Protein Required for Reductive Activation of Corrinoid-dependent Methylamine Methyltransferase Reactions in Methanogenic Archaea journal November 2008
Reconstitution of Dimethylamine:Coenzyme M Methyl Transfer with a Discrete Corrinoid Protein and Two Methyltransferases Purified from Methanosarcina barkeri journal June 2000
MtpB, a member of the MttB superfamily from the human intestinal acetogen Eubacterium limosum , catalyzes proline betaine demethylation journal July 2019
Structural characterization of the ribonuclease H-like type ASKHA superfamily kinase MK0840 from Methanopyrus kandleri journal November 2013
Methanol metabolism in the acetogenic bacterium Acetobacterium woodii journal October 2018
Glycine betaine metabolism in the acetogenic bacterium Acetobacterium woodii journal October 2018
Corrinoid activation by a RACE protein: studies on the interaction of the proteins involved journal June 2013
Methanol: Coenzyme M Methyltransferase from Methanosarcina Barkeri. Purification, Properties and Encoding Genes of the Corrinoid Protein MT1 journal February 1997
Kinetic regulation of a corrinoid-reducing metallo-ATPase by its substrates: Regulation of a corrinoid-reducing metallo-ATPase journal April 2014
How a protein binds B12: A 3.0 A X-ray structure of B12-binding domains of methionine synthase journal December 1994
Biochemical Characterization of the Methylmercaptopropionate:Cob(I)alamin Methyltransferase from Methanosarcina acetivorans journal April 2019
Characterization of an O-Demethylase of Desulfitobacterium hafniense DCB-2 journal April 2012
The Ether-Cleaving Methyltransferase System of the Strict Anaerobe Acetobacterium dehalogenans: Analysis and Expression of the Encoding Genes journal November 2008
Influence of corrinoid antagonists on methanogen metabolism. journal January 1981
Molecular, genetic, and biochemical characterization of the serC gene of Methanosarcina barkeri Fusaro. journal October 1996
Methylthiol:coenzyme M methyltransferase from Methanosarcina barkeri, an enzyme of methanogenesis from dimethylsulfide and methylmercaptopropionate. journal January 1997
Reconstitution of trimethylamine-dependent coenzyme M methylation with the trimethylamine corrinoid protein and the isozymes of methyltransferase II from Methanosarcina barkeri. journal February 1997
The Trimethylamine Methyltransferase Gene and Multiple Dimethylamine Methyltransferase Genes of Methanosarcina barkeri Contain In-Frame and Read-Through Amber Codons journal May 2000
Characterization of a Three-Component Vanillate O-Demethylase from Moorella thermoacetica journal June 2001
The Sugar Kinase/Heat Shock Protein 70/Actin Superfamily: Implications of Conserved Structure for Mechanism journal June 1996
Axial Ligation and Redox Changes at the Cobalt Ion in Cobalamin Bound to Corrinoid Iron-Sulfur Protein (CoFeSP) or in Solution Characterized by XAS and DFT journal July 2016
Examination of the Glycine Betaine-Dependent Methylotrophic Methanogenesis Pathway: Insights Into Anaerobic Quaternary Amine Methylotrophy journal November 2019

Related Subjects