Microbiota of Four Tissue Types in American Alligators (Alligator mississippiensis) Following Extended Dietary Selenomethionine Exposure

Kieran, Troy J.; Goodman, Samantha J.; Finger, John W.; Thomas, Jesse C.; Hamilton, Matthew T.; Tuberville, Tracey D.; Glenn, Travis C.

doi:10.1007/s00128-020-02961-3

Title: Microbiota of Four Tissue Types in American Alligators (Alligator mississippiensis) Following Extended Dietary Selenomethionine Exposure

Journal Article · Thu Aug 13 00:00:00 EDT 2020 · Bulletin of Environmental Contamination and Toxicology

DOI:https://doi.org/10.1007/s00128-020-02961-3· OSTI ID:1799570

; Goodman, Samantha J.; Finger, John W.; Thomas, Jesse C.; Hamilton, Matthew T.; Tuberville, Tracey D.; Glenn, Travis C.

Not provided.

Cite

Export

Save

Research Organization:: Univ. of Georgia, Athens, GA (United States)

Sponsoring Organization:: USDOE Office of Environmental Management (EM)

DOE Contract Number:: EM0004391

OSTI ID:: 1799570

Journal Information:: Bulletin of Environmental Contamination and Toxicology, Vol. 105, Issue 3; ISSN 0007-4861

Country of Publication:: United States

Language:: English

References (39)

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 Bolyen, Evan; Rideout, Jai Ram; Dillon, Matthew R. Nature Biotechnology, Vol. 37, Issue 8 https://doi.org/10.1038/s41587-019-0209-9	journal	July 2019
QIIME allows analysis of high-throughput community sequencing data Caporaso, J. Gregory; Kuczynski, Justin; Stombaugh, Jesse Nature Methods, Vol. 7, Issue 5 https://doi.org/10.1038/nmeth.f.303	journal	April 2010
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB DeSantis, T. Z.; Hugenholtz, P.; Larsen, N. Applied and Environmental Microbiology, Vol. 72, Issue 7, p. 5069-5072 https://doi.org/10.1128/AEM.03006-05	journal	July 2006
The intestinal microbiota and chronic disorders of the gut DuPont, Andrew W.; DuPont, Herbert L. Nature Reviews Gastroenterology & Hepatology, Vol. 8, Issue 9 https://doi.org/10.1038/nrgastro.2011.133	journal	August 2011
Endocrine-Disrupting Chemical Exposure and the American Alligator: A Review of the Potential Role of Environmental Estrogens on the Immune System of a Top Trophic Carnivore Finger, John W.; Gogal, Robert M. Archives of Environmental Contamination and Toxicology, Vol. 65, Issue 4 https://doi.org/10.1007/s00244-013-9953-x	journal	September 2013
Dietary Selenomethionine Administration in the American Alligator (Alligator mississippiensis): Hepatic and Renal Se Accumulation and Its Effects on Growth and Body Condition Finger, John W.; Hamilton, Matthew T.; Glenn, Travis C. Archives of Environmental Contamination and Toxicology, Vol. 72, Issue 3 https://doi.org/10.1007/s00244-017-0370-4	journal	February 2017
Dietary Selenomethionine Administration and Its Effects on the American Alligator (Alligator mississippiensis): Oxidative Status and Corticosterone Levels Finger, John W.; Hamilton, Matthew T.; Kelley, Meghan D. Archives of Environmental Contamination and Toxicology, Vol. 75, Issue 1 https://doi.org/10.1007/s00244-018-0530-1	journal	May 2018
Examining the Effects of Chronic Selenium Exposure on Traditionally Used Stress Parameters in Juvenile American Alligators (Alligator mississippiensis) Finger, John W.; Hamilton, Matthew T.; Kelley, Meghan D. Archives of Environmental Contamination and Toxicology, Vol. 77, Issue 1 https://doi.org/10.1007/s00244-019-00626-9	journal	April 2019
Adapterama I: universal stubs and primers for 384 unique dual-indexed or 147,456 combinatorially-indexed Illumina libraries (iTru & iNext) Glenn, Travis C.; Nilsen, Roger A.; Kieran, Troy J. PeerJ, Vol. 7 https://doi.org/10.7717/peerj.7755	journal	January 2019
Adapterama II: universal amplicon sequencing on Illumina platforms (TaggiMatrix) Glenn, Travis C.; Pierson, Todd W.; Bayona-Vásquez, Natalia J. PeerJ, Vol. 7 https://doi.org/10.7717/peerj.7786	journal	January 2019
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data Kearse, M.; Moir, R.; Wilson, A. Bioinformatics, Vol. 28, Issue 12 https://doi.org/10.1093/bioinformatics/bts199	journal	April 2012
The alligator gut microbiome and implications for archosaur symbioses Keenan, Sarah W.; Engel, Annette Summers; Elsey, Ruth M. Scientific Reports, Vol. 3, Issue 1 https://doi.org/10.1038/srep02877	journal	October 2013
The Good, the Bad, and the Unknown: Microbial Symbioses of the American Alligator Keenan, S. W.; Elsey, R. M. Integrative and Comparative Biology, Vol. 55, Issue 6 https://doi.org/10.1093/icb/icv006	journal	April 2015
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies Klindworth, Anna; Pruesse, Elmar; Schweer, Timmy Nucleic Acids Research, Vol. 41, Issue 1 https://doi.org/10.1093/nar/gks808	journal	August 2012
Selenium, the Thyroid, and the Endocrine System Köhrle, J.; Jakob, F.; Contempré, B. Endocrine Reviews, Vol. 26, Issue 7 https://doi.org/10.1210/er.2001-0034	journal	September 2005
Characterization of the gut microbiota of three commercially valuable warmwater fish species Larsen, A. M.; Mohammed, H. H.; Arias, C. R. Journal of Applied Microbiology, Vol. 116, Issue 6 https://doi.org/10.1111/jam.12475	journal	March 2014
Aquatic selenium pollution is a global environmental safety issue Lemly, A. Dennis Ecotoxicology and Environmental Safety, Vol. 59, Issue 1 https://doi.org/10.1016/S0147-6513(03)00095-2	journal	September 2004
Wildlife and the Coal Waste Policy Debate: Proposed Rules for Coal Waste Disposal Ignore Lessons from 45 Years of Wildlife Poisoning Lemly, A. Dennis; Skorupa, Joseph P. Environmental Science & Technology, Vol. 46, Issue 16 https://doi.org/10.1021/es301467q	journal	August 2012
Comparative analysis of the composition and function of fecal‐gut bacteria in captive juvenile Crocodylus siamensis between healthy and anorexic individuals Lin, Mao; Zeng, Chenxi; Li, Zhongqin MicrobiologyOpen, Vol. 8, Issue 12 https://doi.org/10.1002/mbo3.929	journal	September 2019
FLASH: fast length adjustment of short reads to improve genome assemblies Magoc, T.; Salzberg, S. L. Bioinformatics, Vol. 27, Issue 21 https://doi.org/10.1093/bioinformatics/btr507	journal	September 2011
Analysis of composition of microbiomes: a novel method for studying microbial composition Mandal, Siddhartha; Van Treuren, Will; White, Richard A. Microbial Ecology in Health & Disease, Vol. 26, Issue 0 https://doi.org/10.3402/mehd.v26.27663	journal	May 2015
Xenobiotics Shape the Physiology and Gene Expression of the Active Human Gut Microbiome Maurice, Corinne Ferrier; Haiser, Henry Joseph; Turnbaugh, Peter James Cell, Vol. 152, Issue 1-2 https://doi.org/10.1016/j.cell.2012.10.052	journal	January 2013
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data McMurdie, Paul J.; Holmes, Susan PLoS ONE, Vol. 8, Issue 4 https://doi.org/10.1371/journal.pone.0061217	journal	April 2013
Alligator Tales: New Lessons about Environmental Contaminants from a Sentinel Species Milnes, Matthew R.; Guillette, Louis J. BioScience, Vol. 58, Issue 11 https://doi.org/10.1641/B581106	journal	December 2008
Gut microorganisms, mammalian metabolism and personalized health care Nicholson, Jeremy K.; Holmes, Elaine; Wilson, Ian D. Nature Reviews Microbiology, Vol. 3, Issue 5 https://doi.org/10.1038/nrmicro1152	journal	April 2005
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments Price, Morgan N.; Dehal, Paramvir S.; Arkin, Adam P. PLoS ONE, Vol. 5, Issue 3 https://doi.org/10.1371/journal.pone.0009490	journal	March 2010
Cetobacterium Is a Major Component of the Microbiome of Giant Amazonian Fish (Arapaima gigas) in Ecuador Ramírez, Carolina; Coronado, Jaime; Silva, Arturo Animals, Vol. 8, Issue 11 https://doi.org/10.3390/ani8110189	journal	October 2018
The importance of selenium to human health Rayman, Margaret P. The Lancet, Vol. 356, Issue 9225 https://doi.org/10.1016/S0140-6736(00)02490-9	journal	July 2000
Proteobacteria: A Common Factor in Human Diseases Rizzatti, G.; Lopetuso, L. R.; Gibiino, G. BioMed Research International, Vol. 2017 https://doi.org/10.1155/2017/9351507	journal	January 2017
Maternal Transfer of Selenium in Alligator Mississippiensis Nesting Downstream from a Coal-Burning Power Plant Roe, John H.; Hopkins, William A.; Baionno, Jennifer A. Environmental Toxicology and Chemistry, Vol. 23, Issue 8 https://doi.org/10.1897/03-520	journal	January 2004
The microbiome of New World vultures Roggenbuck, Michael; Bærholm Schnell, Ida; Blom, Nikolaj Nature Communications, Vol. 5, Issue 1 https://doi.org/10.1038/ncomms6498	journal	November 2014
Gut Dysbiosis in Animals Due to Environmental Chemical Exposures Rosenfeld, Cheryl S. Frontiers in Cellular and Infection Microbiology, Vol. 7 https://doi.org/10.3389/fcimb.2017.00396	journal	September 2017
“The Calamity of So Long Life”: Life Histories, Contaminants, and Potential Emerging Threats to Long-lived Vertebrates Rowe, Christopher L. BioScience, Vol. 58, Issue 7 https://doi.org/10.1641/B580709	journal	July 2008
Heavy Metal Toxicity and the Environment Tchounwou, Paul B.; Yedjou, Clement G.; Patlolla, Anita K. Experientia Supplementum https://doi.org/10.1007/978-3-7643-8340-4_6	book	January 2012
Hepatic and renal trace element concentrations in American alligators (Alligator mississippiensis) following chronic dietary exposure to coal fly ash contaminated prey Tuberville, Tracey D.; Scott, David E.; Metts, Brian S. Environmental Pollution, Vol. 214 https://doi.org/10.1016/j.envpol.2016.04.003	journal	July 2016
ggplot2 Wickham, Hadley Use R! https://doi.org/10.1007/978-3-319-24277-4	book	January 2016
Welcome to the Tidyverse Wickham, Hadley; Averick, Mara; Bryan, Jennifer Journal of Open Source Software, Vol. 4, Issue 43 https://doi.org/10.21105/joss.01686	journal	November 2019
Characterisation of the intestinal microbiota of commercially farmed saltwater crocodiles, Crocodylus porosus Willson, Nicky-Lee; Van, Thi T. H.; Lever, John Applied Microbiology and Biotechnology, Vol. 103, Issue 21-22 https://doi.org/10.1007/s00253-019-10143-3	journal	October 2019
Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging Zepeda Mendoza, Marie Lisandra; Roggenbuck, Michael; Manzano Vargas, Karla Acta Veterinaria Scandinavica, Vol. 60, Issue 1 https://doi.org/10.1186/s13028-018-0415-3	journal	October 2018

Similar Records

Dietary Selenomethionine Administration in the American Alligator (Alligator mississippiensis): Hepatic and Renal Se Accumulation and Its Effects on Growth and Body Condition

Journal Article · Wed Feb 01 00:00:00 EST 2017 · Archives of Environmental Contamination and Toxicology · OSTI ID:1799570

Finger, John W.; Hamilton, Matthew T.; Glenn, Travis C.; +1 more

Dietary Selenomethionine Administration and Its Effects on the American Alligator (Alligator mississippiensis): Oxidative Status and Corticosterone Levels

Journal Article · Tue May 08 00:00:00 EDT 2018 · Archives of Environmental Contamination and Toxicology · OSTI ID:1799570

Finger, John W.; Hamilton, Matthew T.; Kelley, Meghan D.; +4 more

Hepatic and renal trace element concentrations in American alligators (Alligator mississippiensis) following chronic dietary exposure to coal fly ash contaminated prey

Journal Article · Fri Jul 01 00:00:00 EDT 2016 · Environmental Pollution · OSTI ID:1799570

Tuberville, Tracey D.; Scott, David E.; Metts, Brian S.; +2 more

Related Subjects

Environmental Sciences & Ecology
Toxicology

Title: Microbiota of Four Tissue Types in American Alligators (Alligator mississippiensis) Following Extended Dietary Selenomethionine Exposure

Citation Formats

References (39)

Similar Records

Related Subjects