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Title: Draft Genome Sequence of Larkinella sp. Strain BK230, Isolated from Populus deltoides Roots

Abstract

This narrative was used for a draft genome of a Larkinella species. This genus contains 9 identified species, of which only 5 have genome sequence data. This specimen was collected from a root sample of an eastern cottonwood (Populus deltoides) from a field site in Bellville, Georgia.

Authors:
ORCiD logo [1]; ORCiD logo [1]
  1. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Publication Date:
Research Org.:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); U.S. Department of Energy Systems Biology Knowledgebase
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1635639
DOE Contract Number:  
AC05-00OR22725; AC02-05CH11231
Resource Type:
Data
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Genome; KBase; Biology

Citation Formats

Pelletier, Dale, and Crockett, Zachary. Draft Genome Sequence of Larkinella sp. Strain BK230, Isolated from Populus deltoides Roots. United States: N. p., 2020. Web. doi:10.25982/54100.27/1635639.
Pelletier, Dale, & Crockett, Zachary. Draft Genome Sequence of Larkinella sp. Strain BK230, Isolated from Populus deltoides Roots. United States. https://doi.org/10.25982/54100.27/1635639
Pelletier, Dale, and Crockett, Zachary. Thu . "Draft Genome Sequence of Larkinella sp. Strain BK230, Isolated from Populus deltoides Roots". United States. https://doi.org/10.25982/54100.27/1635639. https://www.osti.gov/servlets/purl/1635639.
@article{osti_1635639,
title = {Draft Genome Sequence of Larkinella sp. Strain BK230, Isolated from Populus deltoides Roots},
author = {Pelletier, Dale and Crockett, Zachary},
abstractNote = {This narrative was used for a draft genome of a Larkinella species. This genus contains 9 identified species, of which only 5 have genome sequence data. This specimen was collected from a root sample of an eastern cottonwood (Populus deltoides) from a field site in Bellville, Georgia.},
doi = {10.25982/54100.27/1635639},
url = {https://www.osti.gov/biblio/1635639}, journal = {},
number = ,
volume = ,
place = {United States},
year = {2020},
month = {7}
}

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Draft Genome Sequence of Larkinella sp. Strain BK230, Isolated from Populus deltoides Roots
journal, March 2020


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High-throughput generation, optimization and analysis of genome-scale metabolic models
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FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
journal, March 2010


The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
journal, October 2003


The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
journal, November 2013


CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
journal, May 2015


What is flux balance analysis?
journal, March 2010


The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
journal, November 2013


The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
journal, October 2003


The RAST Server: Rapid Annotations using Subsystems Technology
journal, January 2008


FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
journal, March 2010


Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis
journal, July 2016


Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM
journal, July 2013


    Works referencing / citing this record:

    CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
    journal, May 2015


    What is flux balance analysis?
    journal, March 2010


    High-throughput generation, optimization and analysis of genome-scale metabolic models
    journal, August 2010


    The RAST Server: Rapid Annotations using Subsystems Technology
    journal, January 2008


    FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
    journal, March 2010


    The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
    journal, November 2013


    Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM
    journal, July 2013


    The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
    journal, October 2003


    Draft Genome Sequence of Larkinella sp. Strain BK230, Isolated from Populus deltoides Roots
    journal, March 2020