Viral Annotation Pipeline in KBase

Dataset · Sun Jun 28 00:00:00 EDT 2020

DOI:https://doi.org/10.25982/59912.37/1635154· OSTI ID:1635154

Bolduc, Benjamin  ^[1]; Wood-Charlson, Elisha  ^[2]; Dehal, Paramvir  ^[2]; Crockett, Zachary  ^[3]

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1. The Ohio State Univ., Columbus, OH (United States)
2. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
3. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

This data analysis workflow demonstrates how to process a metagenome to identify viruses using VirSorter. Then, provides taxonomic classification using vConTACT2.

• Research Organization: Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); The Ohio State Univ., Columbus, OH (United States); U.S. Department of Energy Systems Biology Knowledgebase; Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
• Sponsoring Organization: USDOE Office of Science (SC), Biological and Environmental Research (BER)
• DOE Contract Number: AC02-05CH11231, AC02-06CH11357, AC05-00OR22725,
• OSTI ID: 1635154
• Country of Publication: United States
• Language: English

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Virus
Genomics
Bioinformatics