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Title: Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon

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Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Univ. of California, Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23); USDOE National Nuclear Security Administration (NNSA)
OSTI Identifier:
Alternate Identifier(s):
OSTI ID: 1477338; OSTI ID: 1513138; OSTI ID: 1600660
Report Number(s):
Journal ID: ISSN 2049-2618; 122; PII: 499
Grant/Contract Number:  
SC0010570; SC0016247; SC10010566; AC02-05CH11231; AC52-07NA27344
Resource Type:
Journal Article: Published Article
Journal Name:
Additional Journal Information:
Journal Name: Microbiome Journal Volume: 6 Journal Issue: 1; Journal ID: ISSN 2049-2618
Springer Science + Business Media
Country of Publication:
United Kingdom
59 BASIC BIOLOGICAL SCIENCES; Stable isotope probing; Complete genome; Saccharibacteria; Metagenomics; Rhizosphere

Citation Formats

Starr, Evan P., Shi, Shengjing, Blazewicz, Steven J., Probst, Alexander J., Herman, Donald J., Firestone, Mary K., and Banfield, Jillian F. Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon. United Kingdom: N. p., 2018. Web. doi:10.1186/s40168-018-0499-z.
Starr, Evan P., Shi, Shengjing, Blazewicz, Steven J., Probst, Alexander J., Herman, Donald J., Firestone, Mary K., & Banfield, Jillian F. Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon. United Kingdom. doi:10.1186/s40168-018-0499-z.
Starr, Evan P., Shi, Shengjing, Blazewicz, Steven J., Probst, Alexander J., Herman, Donald J., Firestone, Mary K., and Banfield, Jillian F. Tue . "Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon". United Kingdom. doi:10.1186/s40168-018-0499-z.
title = {Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon},
author = {Starr, Evan P. and Shi, Shengjing and Blazewicz, Steven J. and Probst, Alexander J. and Herman, Donald J. and Firestone, Mary K. and Banfield, Jillian F.},
abstractNote = {},
doi = {10.1186/s40168-018-0499-z},
journal = {Microbiome},
issn = {2049-2618},
number = 1,
volume = 6,
place = {United Kingdom},
year = {2018},
month = {7}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record at 10.1186/s40168-018-0499-z

Citation Metrics:
Cited by: 13 works
Citation information provided by
Web of Science

Figures / Tables:

Fig. 1 Fig. 1: Stable isotope fraction determination. This plot shows the distribution of densities and concentrations of DNA extracted from week 6 rhizosphere and bulk soil following density centrifugation. The black circles on the curves represent individual fraction measurements. The three fractions are designated as light (blue shading), middle (yellow shading),more » and heavy (red shading). The top numbers indicate the normalized coverage of the T. rhizospherense genome in each fraction. The T. rhizospherense genome had < 1× coverage in each bulk soil fraction« less

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