Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape
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journal
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May 2016 |
Consequences of Whole-Genome Triplication as Revealed by Comparative Genomic Analyses of the Wild Radish Raphanus raphanistrum and Three Other Brassicaceae Species
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May 2014 |
Evolution of Stress-Regulated Gene Expression in Duplicate Genes of Arabidopsis thaliana
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July 2009 |
Doubling down on genomes: Polyploidy and crop plants
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journal
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October 2014 |
Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes
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July 2006 |
Evolutionary Rate and Duplicability in the Arabidopsis thaliana Protein–Protein Interaction Network
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November 2012 |
Repression and loss of gene expression outpaces activation and gain in recently duplicated fly genes
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July 2006 |
Escape from adaptive conflict after duplication in an anthocyanin pathway gene
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June 2008 |
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
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May 2010 |
Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat
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October 2011 |
Gene dosage effects: nonlinearities, genetic interactions, and dosage compensation
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July 2013 |
Functional Divergence of Duplicated Genes Formed by Polyploidy during Arabidopsis Evolution
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June 2004 |
Transcription Factor Families Have Much Higher Expansion Rates in Plants than in Animals
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September 2005 |
Fractionation and subfunctionalization following genome duplications: mechanisms that drive gene content and their consequences
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December 2015 |
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
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January 2013 |
Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome
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October 2004 |
Parallel Domestication of the Heading Date 1 Gene in Cereals
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June 2015 |
Trimmomatic: a flexible trimmer for Illumina sequence data
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April 2014 |
Origin and Early Evolution of Angiosperms
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June 2008 |
Evolutionary Genetics of Genome Merger and Doubling in Plants
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journal
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December 2008 |
DOF AFFECTING GERMINATION 2 is a positive regulator of light-mediated seed germination and is repressed by DOF AFFECTING GERMINATION 1
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January 2015 |
Gene Ontology: tool for the unification of biology
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journal
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May 2000 |
Ancestral polyploidy in seed plants and angiosperms
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journal
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April 2011 |
Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition
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journal
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June 2009 |
Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms
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January 2016 |
Ancient Gene Duplicates in Gossypium (Cotton) Exhibit Near-Complete Expression Divergence
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February 2014 |
The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses: AtGenExpress global abiotic stress data set
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journal
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March 2007 |
The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access
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August 2008 |
Two Rounds of Whole Genome Duplication in the Ancestral Vertebrate
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September 2005 |
Yesterday's polyploids and the mystery of diploidization
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May 2001 |
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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January 2013 |
Evolutionary Dynamics and Functional Specialization of Plant Paralogs Formed by Whole and Small-Scale Genome Duplications
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July 2012 |
Characterization and Effects of the Replicated Flowering Time Gene FLC in Brassica rapa
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November 2002 |
The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle
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February 2014 |
The Gene Balance Hypothesis: From Classical Genetics to Modern Genomics
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February 2007 |
Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
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journal
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March 2003 |
Prevalent Role of Gene Features in Determining Evolutionary Fates of Whole-Genome Duplication Duplicated Genes in Flowering Plants
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journal
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February 2013 |
The evolutionary significance of polyploidy
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journal
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May 2017 |
Two-sided Exact Tests and Matching Confidence Intervals for Discrete Data
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journal
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January 2010 |
The polyploidy revolution then...and now: Stebbins revisited
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journal
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July 2014 |
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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journal
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January 2014 |
Ancient whole genome duplications, novelty and diversification: the WGD Radiation Lag-Time Model
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April 2012 |
Overlapping and antagonistic activities of BASIC PENTACYSTEINE genes affect a range of developmental processes in Arabidopsis: Roles of BASIC PENTACYSTEINE genes
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April 2011 |
The genome of Eucalyptus grandis
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June 2014 |
Evolution of gene duplication in plants
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journal
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June 2016 |
Evolutionary and Expression Signatures of Pseudogenes in Arabidopsis and Rice
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July 2009 |
The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution: Research review
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November 2009 |
Redundancy and rewiring of genetic networks following genome-wide duplication events
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April 2012 |
The Pfam protein families database: towards a more sustainable future
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December 2015 |
Finding and Comparing Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape: CoGe with Rosids
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journal
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October 2008 |
Mutations in the Dof Zinc Finger Genes DAG2 and DAG1 Influence with Opposite Effects the Germination of Arabidopsis Seeds
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June 2002 |
The flowering world: a tale of duplications
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journal
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December 2009 |
Molecular evidence for an ancient duplication of the entire yeast genome
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June 1997 |
Genome duplication and the origin of angiosperms
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journal
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November 2005 |
PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors
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journal
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October 2013 |
Bayesian Estimation of Ancestral Character States on Phylogenies
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journal
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October 2004 |
Importance of Lineage-Specific Expansion of Plant Tandem Duplicates in the Adaptive Response to Environmental Stimuli
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journal
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August 2008 |
Molecular Mechanisms Underlying Origin and Diversification of the Angiosperm Flower
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journal
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August 2007 |
Following Gene Duplication, Paralog Interference Constrains Transcriptional Circuit Evolution
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journal
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October 2013 |
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
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journal
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April 2003 |
Functional Divergence of APETALA1 and FRUITFULL is due to Changes in both Regulation and Coding Sequence
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December 2015 |
Expression Partitioning between Genes Duplicated by Polyploidy under Abiotic Stress and during Organ Development
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October 2007 |
Basic local alignment search tool
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journal
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October 1990 |
Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
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February 2011 |
New Evidence for Genome-Wide Duplications at the Origin of Vertebrates Using an Amphioxus Gene Set and Completed Animal Genomes
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May 2003 |
A Map of KNAT Gene Expression in the Arabidopsis Root
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journal
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January 2006 |
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
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journal
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March 2004 |
Duplication and Diversification in the APETALA1/FRUITFULL Floral Homeotic Gene Lineage: Implications for the Evolution of Floral Development
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October 2003 |
Modeling gene and genome duplications in eukaryotes
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journal
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March 2005 |
A Role for KNAT Class II Genes in Root Development
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January 2007 |
A gene expression map of Arabidopsis thaliana development
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journal
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April 2005 |
Preservation of Duplicate Genes by Complementary, Degenerative Mutations
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journal
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April 1999 |
The Role of Lineage-Specific Gene Family Expansion in the Evolution of Eukaryotes
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journal
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July 2002 |
Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions
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journal
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April 2013 |
Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana
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journal
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June 2015 |
PGDD: a database of gene and genome duplication in plants
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November 2012 |