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Title: Structure of HhaI endonuclease with cognate DNA at an atomic resolution of 1.0 Å

Authors:
; ; ; ; ; ; ;  [1]
  1. Texas-MED
Publication Date:
Research Org.:
Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Org.:
National Institutes of Health (NIH)
OSTI Identifier:
1603149
Resource Type:
Journal Article
Journal Name:
Nucleic Acids Res.
Additional Journal Information:
Journal Volume: 48; Journal Issue: (3) ; 02, 2020
Country of Publication:
United States
Language:
ENGLISH

Citation Formats

Horton, John R., Yang, Jie, Zhang, Xing, Petronzio, Theresa, Fomenkov, Alexey, Wilson, Geoffrey G., Roberts, Richard J., Cheng, Xiaodong, and NE Biolabs). Structure of HhaI endonuclease with cognate DNA at an atomic resolution of 1.0 Å. United States: N. p., 2020. Web. doi:10.1093/nar/gkz1195.
Horton, John R., Yang, Jie, Zhang, Xing, Petronzio, Theresa, Fomenkov, Alexey, Wilson, Geoffrey G., Roberts, Richard J., Cheng, Xiaodong, & NE Biolabs). Structure of HhaI endonuclease with cognate DNA at an atomic resolution of 1.0 Å. United States. doi:10.1093/nar/gkz1195.
Horton, John R., Yang, Jie, Zhang, Xing, Petronzio, Theresa, Fomenkov, Alexey, Wilson, Geoffrey G., Roberts, Richard J., Cheng, Xiaodong, and NE Biolabs). Thu . "Structure of HhaI endonuclease with cognate DNA at an atomic resolution of 1.0 Å". United States. doi:10.1093/nar/gkz1195.
@article{osti_1603149,
title = {Structure of HhaI endonuclease with cognate DNA at an atomic resolution of 1.0 Å},
author = {Horton, John R. and Yang, Jie and Zhang, Xing and Petronzio, Theresa and Fomenkov, Alexey and Wilson, Geoffrey G. and Roberts, Richard J. and Cheng, Xiaodong and NE Biolabs)},
abstractNote = {},
doi = {10.1093/nar/gkz1195},
journal = {Nucleic Acids Res.},
number = (3) ; 02, 2020,
volume = 48,
place = {United States},
year = {2020},
month = {2}
}

Works referenced in this record:

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes
journal, November 2014

  • Roberts, Richard J.; Vincze, Tamas; Posfai, Janos
  • Nucleic Acids Research, Vol. 43, Issue D1, p. D298-D299
  • DOI: 10.1093/nar/gku1046

Type II restriction endonucleases—a historical perspective and more
journal, May 2014

  • Pingoud, Alfred; Wilson, Geoffrey G.; Wende, Wolfgang
  • Nucleic Acids Research, Vol. 42, Issue 12
  • DOI: 10.1093/nar/gku447

A view of consecutive binding events from structures of tetrameric endonuclease Sfi I bound to DNA : The structure of
journal, November 2005

  • Vanamee, Éva Scheuring; Viadiu, Hector; Kucera, Rebecca
  • The EMBO Journal, Vol. 24, Issue 23
  • DOI: 10.1038/sj.emboj.7600880

Modification-dependent restriction endonuclease, MspJI, flips 5-methylcytosine out of the DNA helix
journal, September 2014

  • Horton, John R.; Wang, Hua; Mabuchi, Megumu Yamada
  • Nucleic Acids Research, Vol. 42, Issue 19
  • DOI: 10.1093/nar/gku871

Studies on Lysogenesis i.
journal, January 1951


Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
journal, May 2013

  • Chin, Chen-Shan; Alexander, David H.; Marks, Patrick
  • Nature Methods, Vol. 10, Issue 6
  • DOI: 10.1038/nmeth.2474

NCBI prokaryotic genome annotation pipeline
journal, June 2016

  • Tatusova, Tatiana; DiCuccio, Michael; Badretdin, Azat
  • Nucleic Acids Research, Vol. 44, Issue 14
  • DOI: 10.1093/nar/gkw569

RefSeq: an update on prokaryotic genome annotation and curation
journal, November 2017

  • Haft, Daniel H.; DiCuccio, Michael; Badretdin, Azat
  • Nucleic Acids Research, Vol. 46, Issue D1
  • DOI: 10.1093/nar/gkx1068

How good are my data and what is the resolution?
journal, June 2013

  • Evans, Philip R.; Murshudov, Garib N.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 69, Issue 7
  • DOI: 10.1107/S0907444913000061

Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard
journal, May 2009

  • Terwilliger, Thomas C.; Adams, Paul D.; Read, Randy J.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 65, Issue 6
  • DOI: 10.1107/S0907444909012098

Towards automated crystallographic structure refinement with phenix.refine
journal, March 2012

  • Afonine, Pavel V.; Grosse-Kunstleve, Ralf W.; Echols, Nathaniel
  • Acta Crystallographica Section D Biological Crystallography, Vol. 68, Issue 4
  • DOI: 10.1107/S0907444912001308

Features and development of Coot
journal, March 2010

  • Emsley, P.; Lohkamp, B.; Scott, W. G.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 4
  • DOI: 10.1107/S0907444910007493

Phaser crystallographic software
journal, July 2007

  • McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D.
  • Journal of Applied Crystallography, Vol. 40, Issue 4
  • DOI: 10.1107/S0021889807021206

The Phyre2 web portal for protein modeling, prediction and analysis
journal, May 2015

  • Kelley, Lawrence A.; Mezulis, Stefans; Yates, Christopher M.
  • Nature Protocols, Vol. 10, Issue 6
  • DOI: 10.1038/nprot.2015.053

Direct detection of DNA methylation during single-molecule, real-time sequencing
journal, May 2010

  • Flusberg, Benjamin A.; Webster, Dale R.; Lee, Jessica H.
  • Nature Methods, Vol. 7, Issue 6
  • DOI: 10.1038/nmeth.1459

Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing
journal, December 2011

  • Clark, Tyson A.; Murray, Iain A.; Morgan, Richard D.
  • Nucleic Acids Research, Vol. 40, Issue 4
  • DOI: 10.1093/nar/gkr1146

UbaLAI is a monomeric Type IIE restriction enzyme
journal, July 2017

  • Sasnauskas, Giedrius; Tamulaitienė, Giedrė; Tamulaitis, Gintautas
  • Nucleic Acids Research, Vol. 45, Issue 16
  • DOI: 10.1093/nar/gkx634

Electron diffraction and the hydrogen atom
journal, January 2017


Carbon-Oxygen Hydrogen Bonding in Biological Structure and Function
journal, October 2012

  • Horowitz, Scott; Trievel, Raymond C.
  • Journal of Biological Chemistry, Vol. 287, Issue 50
  • DOI: 10.1074/jbc.R112.418574

Structural basis for human PRDM9 action at recombination hot spots
journal, February 2016

  • Patel, Anamika; Horton, John R.; Wilson, Geoffrey G.
  • Genes & Development, Vol. 30, Issue 3
  • DOI: 10.1101/gad.274928.115

A public database of macromolecular diffraction experiments
journal, October 2016

  • Grabowski, Marek; Langner, Karol M.; Cymborowski, Marcin
  • Acta Crystallographica Section D Structural Biology, Vol. 72, Issue 11
  • DOI: 10.1107/S2059798316014716