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Title: DRoP: Automated detection of conserved solvent;#8208;binding sites on proteins

Authors:
; ; ; ; ; ;  [1]
  1. NEU
Publication Date:
Research Org.:
Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Org.:
National Science Foundation (NSF)
OSTI Identifier:
1591897
Resource Type:
Journal Article
Journal Name:
Proteins
Additional Journal Information:
Journal Volume: 88; Journal Issue: (1) ; 01, 2020
Country of Publication:
United States
Language:
ENGLISH

Citation Formats

Kearney, Bradley M., Schwabe, Michael, Marcus, Kendra C., Roberts, Daniel M., Dechene, Michelle, Swartz, Paul, Mattos, Carla, and NCSU). DRoP: Automated detection of conserved solvent;#8208;binding sites on proteins. United States: N. p., 2020. Web. doi:10.1002/prot.25781.
Kearney, Bradley M., Schwabe, Michael, Marcus, Kendra C., Roberts, Daniel M., Dechene, Michelle, Swartz, Paul, Mattos, Carla, & NCSU). DRoP: Automated detection of conserved solvent;#8208;binding sites on proteins. United States. https://doi.org/10.1002/prot.25781
Kearney, Bradley M., Schwabe, Michael, Marcus, Kendra C., Roberts, Daniel M., Dechene, Michelle, Swartz, Paul, Mattos, Carla, and NCSU). 2020. "DRoP: Automated detection of conserved solvent;#8208;binding sites on proteins". United States. https://doi.org/10.1002/prot.25781.
@article{osti_1591897,
title = {DRoP: Automated detection of conserved solvent;#8208;binding sites on proteins},
author = {Kearney, Bradley M. and Schwabe, Michael and Marcus, Kendra C. and Roberts, Daniel M. and Dechene, Michelle and Swartz, Paul and Mattos, Carla and NCSU)},
abstractNote = {},
doi = {10.1002/prot.25781},
url = {https://www.osti.gov/biblio/1591897}, journal = {Proteins},
number = (1) ; 01, 2020,
volume = 88,
place = {United States},
year = {2020},
month = {1}
}

Works referenced in this record:

Minimizing frustration by folding in an aqueous environment
journal, January 2008


Protein–water interactions in a dynamic world
journal, April 2002


Characterization of interfacial solvent in protein complexes and contribution of wet spots to the interface description
journal, March 2007


MM-PBSA Captures Key Role of Intercalating Water Molecules at a Protein−Protein Interface
journal, January 2009


DRoP: A Water Analysis Program Identifies Ras-GTP-Specific Pathway of Communication between Membrane-Interacting Regions and the Active Site
journal, February 2014


Analysis of solvent structure in proteins using neutron D2OH2O solvent maps: Pattern of primary and secondary hydration of trypsin
journal, March 1992


Tunable allosteric library of caspase-3 identifies coupling between conserved water molecules and conformational selection
journal, September 2016


Multiple Solvent Crystal Structures: Probing Binding Sites, Plasticity and Hydration
journal, April 2006


Locating the catalytic water molecule in serine proteases
journal, July 1993


Buried water in homologous serine proteases
journal, December 1992


Conservation of solvent-binding sites in 10 crystal forms of T4 lysozyme
journal, July 1994


The Protein Data Bank
journal, January 2000


Fragment-based lead discovery: leads by design
journal, July 2005


Analysis of the binding surfaces of proteins
journal, July 1999


Analysis of Binding Site Hot Spots on the Surface of Ras GTPase
journal, November 2011


Multiple solvent crystal structures of ribonuclease A: An assessment of the method
journal, September 2009


Locating interaction sites on proteins: The crystal structure of thermolysin soaked in 2% to 100% isopropanol
journal, December 1999


The structures of rnase a complexed with 3′-CMP and d(CpA): Active site conformation and conserved water molecules
journal, December 1994


Exploring structurally conserved solvent sites in protein families
journal, May 2006


Ribonuclease A
journal, May 1998


Structural basis of an engineered dual-specific antibody: conformational diversity leads to a hypervariable loop metal-binding site
journal, August 2014


Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
journal, September 1998


Exploring Expression Data: Identification and Analysis of Coexpressed Genes
journal, November 1999


[20] Processing of X-ray diffraction data collected in oscillation mode
book, January 1997


PHENIX: a comprehensive Python-based system for macromolecular structure solution
journal, January 2010


Coot model-building tools for molecular graphics
journal, November 2004


Structure of phosphate-free ribonuclease A refined at 1.26 .ANG.
journal, April 1988


Comparison of two independently refined models of ribonuclease-A
journal, August 1986