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Title: Interaction of the TPR-domain of aryl hydrocarbon receptor-interacting protein-like 1 with the regulatory P[gamma] subunit of phosphodiesterase 6

Authors:
; ; ;  [1]
  1. Iowa
Publication Date:
Research Org.:
Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Org.:
National Institutes of Health (NIH)
OSTI Identifier:
1575002
Resource Type:
Journal Article
Journal Name:
J. Biol. Chem.
Additional Journal Information:
Journal Volume: 294; Journal Issue: (43) ; 10, 2019
Country of Publication:
United States
Language:
ENGLISH

Citation Formats

Yadav, Ravi P., Boyd, Kimberly, Yu, Liping, and Artemyev, Nikolai O. Interaction of the TPR-domain of aryl hydrocarbon receptor-interacting protein-like 1 with the regulatory P[gamma] subunit of phosphodiesterase 6. United States: N. p., 2019. Web. doi:10.1074/jbc.RA119.010666.
Yadav, Ravi P., Boyd, Kimberly, Yu, Liping, & Artemyev, Nikolai O. Interaction of the TPR-domain of aryl hydrocarbon receptor-interacting protein-like 1 with the regulatory P[gamma] subunit of phosphodiesterase 6. United States. doi:10.1074/jbc.RA119.010666.
Yadav, Ravi P., Boyd, Kimberly, Yu, Liping, and Artemyev, Nikolai O. Mon . "Interaction of the TPR-domain of aryl hydrocarbon receptor-interacting protein-like 1 with the regulatory P[gamma] subunit of phosphodiesterase 6". United States. doi:10.1074/jbc.RA119.010666.
@article{osti_1575002,
title = {Interaction of the TPR-domain of aryl hydrocarbon receptor-interacting protein-like 1 with the regulatory P[gamma] subunit of phosphodiesterase 6},
author = {Yadav, Ravi P. and Boyd, Kimberly and Yu, Liping and Artemyev, Nikolai O.},
abstractNote = {},
doi = {10.1074/jbc.RA119.010666},
journal = {J. Biol. Chem.},
number = (43) ; 10, 2019,
volume = 294,
place = {United States},
year = {2019},
month = {11}
}

Works referenced in this record:

Current understanding of signal amplification in phototransduction
journal, April 2014

  • Arshavsky, Vadim Y.; Burns, Marie E.
  • Cellular Logistics, Vol. 4, Issue 2
  • DOI: 10.4161/cl.29390

Characteristics of Photoreceptor PDE (PDE6): similarities and differences to PDE5
journal, June 2004


Cyclic Guanosine Monophosphate: Elevation in Degenerating Photoreceptor Cells of the C3H Mouse Retina
journal, November 1974


Retinal degeneration in the rd mouse is caused by a defect in the β subunit of rod cGMP-phosphodiesterase
journal, October 1990

  • Bowes, Cathy; Li, Tiansen; Danciger, Michael
  • Nature, Vol. 347, Issue 6294
  • DOI: 10.1038/347677a0

Identification of a nonsense mutation in the rod photoreceptor cGMP phosphodiesterase beta-subunit gene of the rd mouse.
journal, October 1991

  • Pittler, S. J.; Baehr, W.
  • Proceedings of the National Academy of Sciences, Vol. 88, Issue 19
  • DOI: 10.1073/pnas.88.19.8322

Mutation spectrum of the gene encoding the beta subunit of rod phosphodiesterase among patients with autosomal recessive retinitis pigmentosa.
journal, April 1995

  • McLaughlin, M. E.; Ehrhart, T. L.; Berson, E. L.
  • Proceedings of the National Academy of Sciences, Vol. 92, Issue 8
  • DOI: 10.1073/pnas.92.8.3249

Two pathways of rod photoreceptor cell death induced by elevated cGMP
journal, April 2017

  • Wang, Tian; Tsang, Stephen H.; Chen, Jeannie
  • Human Molecular Genetics, Vol. 26, Issue 12
  • DOI: 10.1093/hmg/ddx121

A homologous genetic basis of the murine cpfl1 mutant and human achromatopsia linked to mutations in the PDE6C gene
journal, November 2009

  • Chang, B.; Grau, T.; Dangel, S.
  • Proceedings of the National Academy of Sciences, Vol. 106, Issue 46
  • DOI: 10.1073/pnas.0907720106

Homozygosity Mapping Reveals PDE6C Mutations in Patients with Early-Onset Cone Photoreceptor Disorders
journal, August 2009

  • Thiadens, Alberta A. H. J.; den Hollander, Anneke I.; Roosing, Susanne
  • The American Journal of Human Genetics, Vol. 85, Issue 2
  • DOI: 10.1016/j.ajhg.2009.06.016

Decreased catalytic activity and altered activation properties of PDE6C mutants associated with autosomal recessive achromatopsia
journal, December 2010

  • Grau, Tanja; Artemyev, Nikolai O.; Rosenberg, Thomas
  • Human Molecular Genetics, Vol. 20, Issue 4
  • DOI: 10.1093/hmg/ddq517

Aryl Hydrocarbon Receptor-interacting Protein-like 1 Is an Obligate Chaperone of Phosphodiesterase 6 and Is Assisted by the γ-Subunit of Its Client
journal, June 2016

  • Gopalakrishna, Kota N.; Boyd, Kimberly; Yadav, Ravi P.
  • Journal of Biological Chemistry, Vol. 291, Issue 31
  • DOI: 10.1074/jbc.M116.737593

Mutations in a new photoreceptor-pineal gene on 17p cause Leber congenital amaurosis
journal, January 2000

  • Sohocki, Melanie M.; Bowne, Sara J.; Sullivan, Lori S.
  • Nature Genetics, Vol. 24, Issue 1
  • DOI: 10.1038/71732

Prevalence of AIPL1 Mutations in Inherited Retinal Degenerative Disease
journal, June 2000

  • Sohocki, Melanie M.; Perrault, Isabelle; Leroy, Bart P.
  • Molecular Genetics and Metabolism, Vol. 70, Issue 2
  • DOI: 10.1006/mgme.2000.3001

The Phenotype of Leber Congenital Amaurosis in Patients With AIPL1 Mutations
journal, July 2004


An overview of leber congenital amaurosis: a model to understand human retinal development
journal, July 2004


Leber congenital amaurosis linked to AIPL1: A mouse model reveals destabilization of cGMP phosphodiesterase
journal, September 2004

  • Ramamurthy, V.; Niemi, G. A.; Reh, T. A.
  • Proceedings of the National Academy of Sciences, Vol. 101, Issue 38
  • DOI: 10.1073/pnas.0404197101

AIPL1, the protein that is defective in Leber congenital amaurosis, is essential for the biosynthesis of retinal rod cGMP phosphodiesterase
journal, September 2004

  • Liu, X.; Bulgakov, O. V.; Wen, X. -H.
  • Proceedings of the National Academy of Sciences, Vol. 101, Issue 38
  • DOI: 10.1073/pnas.0405160101

Interaction of Aryl Hydrocarbon Receptor-interacting Protein-like 1 with the Farnesyl Moiety
journal, June 2013

  • Majumder, Anurima; Gopalakrishna, Kota N.; Cheguru, Pallavi
  • Journal of Biological Chemistry, Vol. 288, Issue 29
  • DOI: 10.1074/jbc.M113.476242

Unique structural features of the AIPL1–FKBP domain that support prenyl lipid binding and underlie protein malfunction in blindness
journal, July 2017

  • Yadav, Ravi P.; Gakhar, Lokesh; Yu, Liping
  • Proceedings of the National Academy of Sciences, Vol. 114, Issue 32
  • DOI: 10.1073/pnas.1704782114

AIPL1: A specialized chaperone for the phototransduction effector
journal, December 2017


The Leber Congenital Amaurosis Protein AIPL1 Functions as Part of a Chaperone Heterocomplex
journal, July 2008

  • Hidalgo-de-Quintana, Juan; Evans, R. Jane; Cheetham, Michael E.
  • Investigative Opthalmology & Visual Science, Vol. 49, Issue 7
  • DOI: 10.1167/iovs.07-1576

Extended conformation of the proline-rich domain of human aryl hydrocarbon receptor-interacting protein-like 1: implications for retina disease
journal, August 2015

  • Yadav, Ravi P.; Majumder, Anurima; Gakhar, Lokesh
  • Journal of Neurochemistry, Vol. 135, Issue 1
  • DOI: 10.1111/jnc.13223

The HSP90 chaperone machinery
journal, April 2017

  • Schopf, Florian H.; Biebl, Maximilian M.; Buchner, Johannes
  • Nature Reviews Molecular Cell Biology, Vol. 18, Issue 6
  • DOI: 10.1038/nrm.2017.20

AIP and its interacting partners
journal, March 2011

  • Trivellin, Giampaolo; Korbonits, Márta
  • Journal of Endocrinology, Vol. 210, Issue 2
  • DOI: 10.1530/JOE-11-0054

Hsp90 inhibition protects against inherited retinal degeneration
journal, December 2013

  • Aguilà, Mònica; Bevilacqua, Dalila; McCulley, Caroline
  • Human Molecular Genetics, Vol. 23, Issue 8
  • DOI: 10.1093/hmg/ddt613

NMR resonance assignments of the FKBP domain of human aryl hydrocarbon receptor-interacting protein-like 1 (AIPL1) in complex with a farnesyl ligand
journal, February 2017

  • Yu, Liping; Yadav, Ravi P.; Artemyev, Nikolai O.
  • Biomolecular NMR Assignments, Vol. 11, Issue 1
  • DOI: 10.1007/s12104-017-9730-2

NMR resonance assignments of the TPR domain of human aryl hydrocarbon receptor-interacting protein-like 1 (AIPL1)
journal, October 2018

  • Yu, Liping; Yadav, Ravi P.; Artemyev, Nikolai O.
  • Biomolecular NMR Assignments, Vol. 13, Issue 1
  • DOI: 10.1007/s12104-018-9856-x

Two-site high-affinity interaction between inhibitory and catalytic subunits of rod cyclic GMP phosphodiesterase
journal, April 1992

  • Artemyev, N. O.; Hamm, H. E.
  • Biochemical Journal, Vol. 283, Issue 1
  • DOI: 10.1042/bj2830273

Structural basis of phosphodiesterase 6 inhibition by the C-terminal region of the γ-subunit
journal, October 2009

  • Barren, Brandy; Gakhar, Lokesh; Muradov, Hakim
  • The EMBO Journal, Vol. 28, Issue 22
  • DOI: 10.1038/emboj.2009.284

Structural determinants for regulation of phosphodiesterase by a G protein at 2.0 Å
journal, February 2001

  • Slep, Kevin C.; Kercher, Michele A.; He, Wei
  • Nature, Vol. 409, Issue 6823
  • DOI: 10.1038/35059138

Intrinsically disordered  -subunit of cGMP phosphodiesterase encodes functionally relevant transient secondary and tertiary structure
journal, January 2008

  • Song, J.; Guo, L. -W.; Muradov, H.
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue 5
  • DOI: 10.1073/pnas.0709558105

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination
journal, September 1998

  • Brünger, A. T.; Adams, P. D.; Clore, G. M.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 54, Issue 5
  • DOI: 10.1107/S0907444998003254

Cryo-EM structure of phosphodiesterase 6 reveals insights into the allosteric regulation of type I phosphodiesterases
journal, February 2019

  • Gulati, Sahil; Palczewski, Krzysztof; Engel, Andreas
  • Science Advances, Vol. 5, Issue 2
  • DOI: 10.1126/sciadv.aav4322

ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules
journal, May 2016

  • Ashkenazy, Haim; Abadi, Shiran; Martz, Eric
  • Nucleic Acids Research, Vol. 44, Issue W1
  • DOI: 10.1093/nar/gkw408

Retinal Degeneration in Mice Lacking the gamma Subunit of the Rod cGMP Phosphodiesterase
journal, May 1996


Effect of the ILE86TER mutation in the γ subunit of cGMP phosphodiesterase (PDE6) on rod photoreceptor signaling
journal, January 2012


The tetratricopeptide-repeat motif is a versatile platform that enables diverse modes of molecular recognition
journal, February 2019


An Autoinhibited Conformation of LGN Reveals a Distinct Interaction Mode between GoLoco Motifs and TPR Motifs
journal, June 2013


Molecular Determinants of cGMP Binding to Chicken Cone Photoreceptor Phosphodiesterase
journal, August 2004

  • Huang, Daming; Hinds, Thomas R.; Martinez, Sergio E.
  • Journal of Biological Chemistry, Vol. 279, Issue 46
  • DOI: 10.1074/jbc.M404338200

The GAFa Domains of Rod cGMP-phosphodiesterase 6 Determine the Selectivity of the Enzyme Dimerization
journal, January 2003

  • Muradov, Khakim G.; Boyd, Kimberly K.; Martinez, Sergio E.
  • Journal of Biological Chemistry, Vol. 278, Issue 12
  • DOI: 10.1074/jbc.M208456200

XDS
journal, January 2010

  • Kabsch, Wolfgang
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2
  • DOI: 10.1107/S0907444909047337

Scaling and assessment of data quality
journal, December 2005

  • Evans, Philip
  • Acta Crystallographica Section D Biological Crystallography, Vol. 62, Issue 1, p. 72-82
  • DOI: 10.1107/S0907444905036693

Phaser crystallographic software
journal, July 2007

  • McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D.
  • Journal of Applied Crystallography, Vol. 40, Issue 4
  • DOI: 10.1107/S0021889807021206

REFMAC 5 for the refinement of macromolecular crystal structures
journal, March 2011

  • Murshudov, Garib N.; Skubák, Pavol; Lebedev, Andrey A.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 67, Issue 4
  • DOI: 10.1107/S0907444911001314

PHENIX: a comprehensive Python-based system for macromolecular structure solution
journal, January 2010

  • Adams, Paul D.; Afonine, Pavel V.; Bunkóczi, Gábor
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2, p. 213-221
  • DOI: 10.1107/S0907444909052925

Coot model-building tools for molecular graphics
journal, November 2004

  • Emsley, Paul; Cowtan, Kevin
  • Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 12, p. 2126-2132
  • DOI: 10.1107/S0907444904019158

Liquid-chromatography-coupled SAXS for accurate sizing of aggregating proteins
journal, June 2004

  • Mathew, Elizabeth; Mirza, Ahmed; Menhart, Nick
  • Journal of Synchrotron Radiation, Vol. 11, Issue 4
  • DOI: 10.1107/S0909049504014086

BioXTAS RAW : improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis
journal, September 2017

  • Hopkins, Jesse Bennett; Gillilan, Richard E.; Skou, Soren
  • Journal of Applied Crystallography, Vol. 50, Issue 5
  • DOI: 10.1107/S1600576717011438

ATSAS 2.8 : a comprehensive data analysis suite for small-angle scattering from macromolecular solutions
journal, June 2017

  • Franke, D.; Petoukhov, M. V.; Konarev, P. V.
  • Journal of Applied Crystallography, Vol. 50, Issue 4
  • DOI: 10.1107/S1600576717007786

NMRPipe: A multidimensional spectral processing system based on UNIX pipes
journal, November 1995

  • Delaglio, Frank; Grzesiek, Stephan; Vuister, GeertenW.
  • Journal of Biomolecular NMR, Vol. 6, Issue 3
  • DOI: 10.1007/BF00197809

NMR View: A computer program for the visualization and analysis of NMR data
journal, September 1994

  • Johnson, Bruce A.; Blevins, Richard A.
  • Journal of Biomolecular NMR, Vol. 4, Issue 5
  • DOI: 10.1007/BF00404272

Comparative Protein Modelling by Satisfaction of Spatial Restraints
journal, December 1993


CRYSOL – a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates
journal, December 1995

  • Svergun, D.; Barberato, C.; Koch, M. H. J.
  • Journal of Applied Crystallography, Vol. 28, Issue 6
  • DOI: 10.1107/S0021889895007047

SASBDB, a repository for biological small-angle scattering data
journal, October 2014

  • Valentini, Erica; Kikhney, Alexey G.; Previtali, Gianpietro
  • Nucleic Acids Research, Vol. 43, Issue D1
  • DOI: 10.1093/nar/gku1047