Rapid Tomographic Image Reconstruction via Large-Scale Parallelization

Bicer, Tekin; Gursoy, Doga; Kettimuthu, Rajkumar; Carlo, Francesco De; Agrawal, Gagan; Foster, Ian T.

doi:10.1007/978-3-662-48096-0_23

Title: Rapid Tomographic Image Reconstruction via Large-Scale Parallelization

Conference · Tue Sep 24 00:00:00 EDT 2019

DOI:https://doi.org/10.1007/978-3-662-48096-0_23· OSTI ID:1566809

Bicer, Tekin; Gursoy, Doga; Kettimuthu, Rajkumar; Carlo, Francesco De; Agrawal, Gagan; Foster, Ian T.

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Research Organization:: Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)

Sponsoring Organization:: DOE - BASIC ENERGY SCIENCES

OSTI ID:: 1566809

Resource Relation:: Conference: Euro-Par 2015: Parallel Processing ;Aug. 24-28, 2015;Vienna, Austria

Country of Publication:: United States

Language:: ENGLISH

References (20)

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A fast forward projection using multithreads for multirays on GPUs in medical image reconstruction: Fast forward projection on GPUs Chou, Cheng-Ying; Chuo, Yi-Yen; Hung, Yukai Medical Physics, Vol. 38, Issue 7 https://doi.org/10.1118/1.3591994	journal	June 2011
Scientific data exchange: a schema for HDF5-based storage of raw and analyzed data De Carlo, Francesco; Gürsoy, Dogˇa; Marone, Federica Journal of Synchrotron Radiation, Vol. 21, Issue 6 https://doi.org/10.1107/S160057751401604X	journal	October 2014
Workflow Management for Real-Time Analysis of Lightsource Experiments Deslippe, Jack; Essiari, Abdelilah; Patton, Simon J. 2014 9th Workshop on Workflows in Support of Large-Scale Science (WORKS) https://doi.org/10.1109/WORKS.2014.9	conference	November 2014
Maximum a posteriori estimation of crystallographic phases in X-ray diffraction tomography Gürsoy, Doĝa; Biçer, Tekin; Almer, Jonathan D. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol. 373, Issue 2043 https://doi.org/10.1098/rsta.2014.0392	journal	June 2015
Hyperspectral image reconstruction for x-ray fluorescence tomography Gürsoy, Doǧa; Biçer, Tekin; Lanzirotti, Antonio Optics Express, Vol. 23, Issue 7 https://doi.org/10.1364/OE.23.009014	journal	January 2015
TomoPy: a framework for the analysis of synchrotron tomographic data Gürsoy, Dogˇa; De Carlo, Francesco; Xiao, Xianghui Journal of Synchrotron Radiation, Vol. 21, Issue 5 https://doi.org/10.1107/S1600577514013939	journal	August 2014
Recent Advances in CT Image Reconstruction Hsieh, Jiang; Nett, Brian; Yu, Zhou Current Radiology Reports, Vol. 1, Issue 1 https://doi.org/10.1007/s40134-012-0003-7	journal	January 2013
Hybrid MPI-OpenMP Programming for Parallel OSEM PET Reconstruction Jones, M. D.; Yao, R.; Bhole, C. P. IEEE Transactions on Nuclear Science, Vol. 53, Issue 5 https://doi.org/10.1109/TNS.2006.882295	journal	October 2006
A comparative study of X-ray tomographic microscopy on shales at different synchrotron facilities: ALS, APS and SLS Kanitpanyacharoen, Waruntorn; Parkinson, Dilworth Y.; De Carlo, Francesco Journal of Synchrotron Radiation, Vol. 20, Issue 1 https://doi.org/10.1107/S0909049512044354	journal	November 2012
CUDA optimization strategies for compute- and memory-bound neuroimaging algorithms Lee, Daren; Dinov, Ivo; Dong, Bin Computer Methods and Programs in Biomedicine, Vol. 106, Issue 3 https://doi.org/10.1016/j.cmpb.2010.10.013	journal	June 2012
TIMBIR: A Method for Time-Space Reconstruction From Interlaced Views Aditya Mohan, K.; Venkatakrishnan, S. V.; Gibbs, John W. IEEE Transactions on Computational Imaging, Vol. 1, Issue 2 https://doi.org/10.1109/TCI.2015.2431913	journal	June 2015
Iterative reconstruction of magnetic induction using Lorentz transmission electron tomography Phatak, C.; Gürsoy, D. Ultramicroscopy, Vol. 150 https://doi.org/10.1016/j.ultramic.2014.11.033	journal	March 2015
Fast, Accurate and Shift-Varying Line Projections for Iterative Reconstruction Using the GPU Pratx, G.; Chinn, G.; Olcott, P. D. IEEE Transactions on Medical Imaging, Vol. 28, Issue 3 https://doi.org/10.1109/TMI.2008.2006518	journal	March 2009
Accelerating advanced MRI reconstructions on GPUs Stone, S. S.; Haldar, J. P.; Tsao, S. C. Journal of Parallel and Distributed Computing, Vol. 68, Issue 10 https://doi.org/10.1016/j.jpdc.2008.05.013	journal	October 2008
STIR: software for tomographic image reconstruction release 2 Thielemans, Kris; Tsoumpas, Charalampos; Mustafovic, Sanida Physics in Medicine and Biology, Vol. 57, Issue 4 https://doi.org/10.1088/0031-9155/57/4/867	journal	January 2012
Pushing the limits for medical image reconstruction on recent standard multicore processors Treibig, Jan; Hager, Georg; Hofmann, Hannes G. The International Journal of High Performance Computing Applications, Vol. 27, Issue 2 https://doi.org/10.1177/1094342012442424	journal	June 2012
A high-throughput x-ray microtomography system at the Advanced Photon Source Wang, Yuxin; De Carlo, Francesco; Mancini, Derrick C. Review of Scientific Instruments, Vol. 72, Issue 4 https://doi.org/10.1063/1.1355270	journal	April 2001
A Fast CT Reconstruction Scheme for a General Multi-Core PC Zeng, Kai; Bai, Erwei; Wang, Ge International Journal of Biomedical Imaging, Vol. 2007 https://doi.org/10.1155/2007/29160	journal	January 2007

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