Genome-wide transcriptomic analysis of a desert willow, Salix psammophila, reveals the function of hub genes SpMDP1 and SpWRKY33 in drought tolerance
Abstract
Background: Drought is a major environmental constraint to plant growth, development and productivity. Compared with most willows that are generally susceptible to drought, the desert willow Salix psammophila has extraordinary adaptation to drought stress. However, its molecular basis of drought tolerance is still largely unknown.Results: During polyethylene glycol 6000 (PEG 6000)-simulated drought stress, we found that the osmotic adjustment substances were accumulated and the antioxidant enzyme activities were enhanced in S. psammophila roots. A total of 8172 differentially expressed genes were identified in roots of S. psammophila through RNA-Sequencing. Based on K-means clustering, their expression patterns were classified into nine clusters, which were enriched in several stress-related processes including transcriptional regulation, response to various stresses, cell death, etc. Moreover, 672 transcription factors from 45 gene families were differentially expressed under drought stress. Furthermore, a weighted gene co-expression network was constructed, and eight genes were identified as hub genes. We demonstrated the function of two hub genes, magnesium-dependent phosphatase 1 (SpMDP1) and SpWRKY33, through overexpression in Arabidopsis thaliana. Overexpression of the two hub genes enhanced the drought tolerance in transgenic plants, suggesting that the identification of candidate drought tolerance genes in this study was highly efficient and credible.Conclusions: Our study analyzedmore »
- Authors:
-
[2];
- Chinese Academy of Forestry, Beijing (China)
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Chinese Academy of Forestry, Beijing (China)
- Publication Date:
- Research Org.:
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1557471
- Grant/Contract Number:
- AC05-00OR22725
- Resource Type:
- Journal Article: Accepted Manuscript
- Journal Name:
- BMC Plant Biology
- Additional Journal Information:
- Journal Volume: 19; Journal Issue: 1; Journal ID: ISSN 1471-2229
- Publisher:
- BioMed Central
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Jia, Huixia, Zhang, Jin, Li, Jianbo, Sun, Pei, Zhang, Yahong, Xin, Xuebing, Lu, Mengzhu, and Hu, Jianjun. Genome-wide transcriptomic analysis of a desert willow, Salix psammophila, reveals the function of hub genes SpMDP1 and SpWRKY33 in drought tolerance. United States: N. p., 2019.
Web. doi:10.1186/s12870-019-1900-1.
Jia, Huixia, Zhang, Jin, Li, Jianbo, Sun, Pei, Zhang, Yahong, Xin, Xuebing, Lu, Mengzhu, & Hu, Jianjun. Genome-wide transcriptomic analysis of a desert willow, Salix psammophila, reveals the function of hub genes SpMDP1 and SpWRKY33 in drought tolerance. United States. https://doi.org/10.1186/s12870-019-1900-1
Jia, Huixia, Zhang, Jin, Li, Jianbo, Sun, Pei, Zhang, Yahong, Xin, Xuebing, Lu, Mengzhu, and Hu, Jianjun. Thu .
"Genome-wide transcriptomic analysis of a desert willow, Salix psammophila, reveals the function of hub genes SpMDP1 and SpWRKY33 in drought tolerance". United States. https://doi.org/10.1186/s12870-019-1900-1. https://www.osti.gov/servlets/purl/1557471.
@article{osti_1557471,
title = {Genome-wide transcriptomic analysis of a desert willow, Salix psammophila, reveals the function of hub genes SpMDP1 and SpWRKY33 in drought tolerance},
author = {Jia, Huixia and Zhang, Jin and Li, Jianbo and Sun, Pei and Zhang, Yahong and Xin, Xuebing and Lu, Mengzhu and Hu, Jianjun},
abstractNote = {Background: Drought is a major environmental constraint to plant growth, development and productivity. Compared with most willows that are generally susceptible to drought, the desert willow Salix psammophila has extraordinary adaptation to drought stress. However, its molecular basis of drought tolerance is still largely unknown.Results: During polyethylene glycol 6000 (PEG 6000)-simulated drought stress, we found that the osmotic adjustment substances were accumulated and the antioxidant enzyme activities were enhanced in S. psammophila roots. A total of 8172 differentially expressed genes were identified in roots of S. psammophila through RNA-Sequencing. Based on K-means clustering, their expression patterns were classified into nine clusters, which were enriched in several stress-related processes including transcriptional regulation, response to various stresses, cell death, etc. Moreover, 672 transcription factors from 45 gene families were differentially expressed under drought stress. Furthermore, a weighted gene co-expression network was constructed, and eight genes were identified as hub genes. We demonstrated the function of two hub genes, magnesium-dependent phosphatase 1 (SpMDP1) and SpWRKY33, through overexpression in Arabidopsis thaliana. Overexpression of the two hub genes enhanced the drought tolerance in transgenic plants, suggesting that the identification of candidate drought tolerance genes in this study was highly efficient and credible.Conclusions: Our study analyzed the physiological and molecular responses to drought stress in S. psammophila, and these results contribute to dissect the mechanism of drought tolerance of S. psammophila and facilitate identification of critical genes involved in drought tolerance for willow breeding.},
doi = {10.1186/s12870-019-1900-1},
url = {https://www.osti.gov/biblio/1557471},
journal = {BMC Plant Biology},
issn = {1471-2229},
number = 1,
volume = 19,
place = {United States},
year = {2019},
month = {8}
}
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Works referencing / citing this record:
Colorimetric Method for Determination of Sugars and Related Substances
journal, March 1956
- DuBois, Michel.; Gilles, K. A.; Hamilton, J. K.
- Analytical Chemistry, Vol. 28, Issue 3, p. 350-356
Transcriptome dynamics of Arabidopsis during sequential biotic and abiotic stresses
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Genome-scale transcriptome analysis of the desert poplar, Populus euphratica
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Physiological and transcriptome analysis of heteromorphic leaves and hydrophilic roots in response to soil drying in desert Populus euphratica
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Characterization of the promoter and extended C-terminal domain of Arabidopsis WRKY33 and functional analysis of tomato WRKY33 homologues in plant stress responses
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Catalase, Peroxidase, and Polyphenoloxidase Activities during Rice Leaf Senescence
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Increasing drought under global warming in observations and models
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Overexpression of calmodulin-like (ShCML44) stress-responsive gene from Solanum habrochaites enhances tolerance to multiple abiotic stresses
journal, August 2016
- Munir, Shoaib; Liu, Hui; Xing, Yali
- Scientific Reports, Vol. 6, Issue 1
Genetic Improvement of Willow for Bioenergy and BiofuelsFree Access
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- Karp, Angela; Hanley, Steve J.; Trybush, Sviatlana O.
- Journal of Integrative Plant Biology, Vol. 53, Issue 2
Chrysanthemum CmHSFA4 gene positively regulates salt stress tolerance in transgenic chrysanthemum
journal, January 2018
- Li, Fei; Zhang, Huanru; Zhao, Husheng
- Plant Biotechnology Journal, Vol. 16, Issue 7
The transcriptomic signature of developing soybean seeds reveals the genetic basis of seed trait adaptation during domestication
journal, June 2016
- Lu, Xiang; Li, Qing-Tian; Xiong, Qing
- The Plant Journal, Vol. 86, Issue 6
Genome-wide transcriptional response of Populus euphratica to long-term drought stress
journal, October 2012
- Yan, Dong-Hui; Fenning, Trevor; Tang, Sha
- Plant Science, Vol. 195
Transcriptome analysis revealed the drought-responsive genes in Tibetan hulless barley
journal, May 2016
- Zeng, Xingquan; Bai, Lijun; Wei, Zexiu
- BMC Genomics, Vol. 17, Issue 1
Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response
journal, November 2011
- Cheng, Mei-Chun; Hsieh, En-Jung; Chen, Jui-Hung
- Plant Physiology, Vol. 158, Issue 1
Phosphoproteome analysis reveals new drought response and defense mechanisms of seedling leaves in bread wheat (Triticum aestivum L.)
journal, September 2014
- Zhang, Ming; Lv, Dongwen; Ge, Pei
- Journal of Proteomics, Vol. 109
Comparative analysis of drought-responsive transcriptome in Indica rice genotypes with contrasting drought tolerance: Drought-responsive transcriptome analysis in rice
journal, August 2010
- Lenka, Sangram K.; Katiyar, Amit; Chinnusamy, Viswanathan
- Plant Biotechnology Journal, Vol. 9, Issue 3
Climatic controls on sap flow dynamics and used water sources of Salix psammophila in a semi-arid environment in northwest China
journal, July 2014
- Huang, Jinting; Zhou, Yangxiao; Yin, Lihe
- Environmental Earth Sciences, Vol. 73, Issue 1
Proline and reactive oxygen/nitrogen species metabolism is involved in the tolerant response of the invasive plant species Ailanthus altissima to drought and salinity
journal, January 2014
- Filippou, Panagiota; Bouchagier, Pavlos; Skotti, Effie
- Environmental and Experimental Botany, Vol. 97
Drought stress and reactive oxygen species: production, scavenging and signaling
journal, March 2008
- Cruz de Carvalho, Maria Helena
- Plant Signaling & Behavior, Vol. 3, Issue 3
Protein damage, repair and proteolysis
journal, February 2014
- Chondrogianni, Niki; Petropoulos, Isabelle; Grimm, Stefanie
- Molecular Aspects of Medicine, Vol. 35
OsCML4 improves drought tolerance through scavenging of reactive oxygen species in rice
journal, January 2015
- Yin, Xu Ming; Huang, Li Fanng; Zhang, Xin
- Journal of Plant Biology, Vol. 58, Issue 1
Genome-wide transcriptional and physiological responses to drought stress in leaves and roots of two willow genotypes
journal, October 2015
- Pucholt, Pascal; Sjödin, Per; Weih, Martin
- BMC Plant Biology, Vol. 15, Issue 1
Water Stress, Growth, and Osmotic Adjustment
journal, February 1976
- Hsiao, T. C.; Acevedo, E.; Fereres, E.
- Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 273, Issue 927
Growth responses of 15 Salix genotypes to temporary water stress are different from the responses to permanent water shortage
journal, June 2010
- Bonosi, Lorenzo; Ghelardini, Luisa; Weih, Martin
- Trees, Vol. 24, Issue 5
Identification of cis-regulatory elements associated with salinity and drought stress tolerance in rice from co-expressed gene interaction networks
journal, March 2018
- Mishra, Pragya; Singh, Nisha; Jain, Ajay
- Bioinformation, Vol. 14, Issue 03
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