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Title: Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome

Journal Article · · Cell
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  1. Monash Univ. Melbourne (Australia)
  2. Kyoto Univ., Kyoto (Japan)
  3. Kindai Univ., Wakayama (Japan)
  4. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); HudsonAlpha Institute of Biotechnology, Huntsville, AL (United States)
  5. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  6. Kobe Univ., Kobe (Japan)
  7. Research Organization of Information and Systems, Mishima (Japan)
  8. Austrian Academy of Sciences, Vienna Biocenter (VBC), Vienna (Austria)
  9. Nara Institute of Science and Technology, Nara (Japan)
  10. Univ. of Osnabrück, Osnabrück (Germany)
  11. Univ. Veracruzana, Veracruz (Mexico)
  12. Monash Univ., Melbourne (Australia)
  13. Univ. of Cambridge, Cambridge (United Kingdom)
  14. National Lab. of Genomics for Biodiversity, Guanajuato (Mexico)
  15. Univ. of Oxford, Oxford (United Kingdom)
  16. Univ. of Tennessee, Knoxville, TN (United States)
  17. The New Zealand Institute for Plant & Food Research Ltd., Palmerston North (New Zealand)
  18. Nara Inst. of Science and Technology, Nara (Japan)
  19. Monash Univ., Melbourne (Australia); Univ. of Osnabrück, Osnabrück (Germany)
  20. Monash Univ., Melbourne (Australia); Uppsala Univ., Uppsala (Sweden)
  21. National Inst. of Genetics, Mishima (Japan)
  22. Vienna Biocenter Core Facilities (VBCF), Vienna (Austria)
  23. Univ. de Montpellier, Montpellier (France)
  24. Univ.of Zurich, Zürich (Switzerland)
  25. The Univ. of Tokyo, Tokyo (Japan)
  26. Monash Univ., Melbourne (Australia); Nagoya Univ., Nagoya (Japan); Gakushuin Univ., Tokyo (Japan)
  27. Okayama Univ., Okayama (Japan)
  28. Nagoya Univ., Nagoya (Japan)
  29. National Inst. for Basic Biology, Okazaki (Japan); The Univ. of Tokyo, Tokyo (Japan)
  30. Tohoku Univ., Sendai (Japan)
  31. Austrian Academy of Sciences, Vienna (Austria); Univ. of Kentucky, Lexington, KY (United States)
  32. Gakushuin Univ., Tokyo (Japan); Nagoya Univ., Chikusa, Nagoya (Japan)
  33. Tokyo Univ. of Agriculture, Tokyo (Japan)
  34. Uppsala Univ., Uppsala (Sweden)
  35. National Taiwan Univ., Taipei (Taiwan)
  36. Inst. de Ecología, Veracruz (Mexico)
  37. Cold Spring Harbor Lab., Spring Harbor, NY (United States)
  38. Univ. Autónoma de Madrid, Madrid (Spain)
  39. The Univ. of Arizona, Tucson, AZ (United States)
  40. National Institute of Genetics, Mishima (Japan); Kazusa DNA Research Inst., Chiba (Japan)
  41. RIKEN Center for Sustainable Resource Science, Yokohama (Japan); Max Planck Inst. for Plant Breeding Research, Cologne (Germany)
  42. Tokyo Metropolitan Univ., Tokyo (Japan)
  43. Univ. of Minnesota, St. Paul, MN (United States)
  44. Univ. of Zurich, Zürich (Switzerland)
  45. Kumamoto Univ., Kumamoto (Japan)
  46. Univ. of Zurich, Zurich (Switzerland)
  47. The Univ. of Tokyo, Chiba (Japan)
  48. Kyoto Univ., Gokasho (Japan)
  49. Univ. Ulm, Ulm (Germany)
  50. Saitama Univ., Saitama (Japan)
  51. National Inst. for Basic Biology, Okazaki (Japan)
  52. Kyoto Univ., Uji (Japan)
  53. RIKEN Center for Sustainable Resource Science, Yokohama (Japan)
+ Show Author Affiliations

The evolution of land flora transformed the terrestrial environment. Land plants evolved from an ancestral charophycean alga from which they inherited developmental, biochemical, and cell biological attributes. Additional biochemical and physiological adaptations to land, and a life cycle with an alternation between multicellular haploid and diploid generations that facilitated efficient dispersal of desiccation tolerant spores, evolved in the ancestral land plant. We analyzed the genome of the liverwort Marchantia polymorpha, a member of a basal land plant lineage. Relative to charophycean algae, land plant genomes are characterized by genes encoding novel biochemical pathways, new phytohormone signaling pathways (notably auxin), expanded repertoires of signaling pathways, and increased diversity in some transcription factor families. Compared with other sequenced land plants, M. polymorpha exhibits low genetic redundancy in most regulatory pathways, with this portion of its genome resembling that predicted for the ancestral land plant. PAPERCLIP.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC); Univ. of California, Oakland, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1543518
Alternate ID(s):
OSTI ID: 1572782
Journal Information:
Cell, Vol. 171, Issue 2; ISSN 0092-8674
Publisher:
ElsevierCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 679 works
Citation information provided by
Web of Science

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A pseudomolecule‐scale genome assembly of the liverwort Marchantia polymorpha text January 2020
Gene gains paved the path to land journal January 2020
Protein S ‐Nitrosylation in plants: Current progresses and challenges journal March 2019
Evolution of the Symbiosis-Specific GRAS Regulatory Network in Bryophytes journal November 2018
Cytokinin signaling coordinates development of diverse organs in Marchantia polymorpha journal September 2019
Origin of Gibberellin-Dependent Transcriptional Regulation by Molecular Exploitation of a Transactivation Domain in DELLA Proteins journal January 2019
The complete chloroplast genome of Korean Marchantia polymorpha subsp. ruderalis Bischl. & Boisselier: low genetic diversity between Korea and Japan journal January 2019
Fissures and pores in the capsule walls and hydrophobic elaters in Haplomitrium : a transmission and cryo-scanning electron microscope study journal October 2019
Control of proliferation in the haploid meristem by CLE peptide signaling in Marchantia polymorpha journal March 2019
Comprehensive Genome-Wide Classification Reveals That Many Plant-Specific Transcription Factors Evolved in Streptophyte Algae journal December 2017
Physcomitrella patens MAX2 characterization suggests an ancient role for this F-box protein in photomorphogenesis rather than strigolactone signalling journal May 2018
Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin journal February 2020
Demystifying the liverwort Radula marginata, a critical review on its taxonomy, genetics, cannabinoid phytochemistry and pharmacology journal June 2019
OsbZIP81, A Homologue of Arabidopsis VIP1, May Positively Regulate JA Levels by Directly Targetting the Genes in JA Signaling and Metabolism Pathway in Rice journal May 2019
Gene refashioning through innovative shifting of reading frames in mosses journal April 2018
Metatranscriptomic and metabolite profiling reveals vertical heterogeneity within a Zygnema green algal mat from Svalbard (High Arctic) journal September 2019
Aberrant protein phosphatase 2C leads to abscisic acid insensitivity and high transpiration in parasitic Striga journal February 2019
COP1 destabilizes DELLA proteins in Arabidopsis journal May 2020
UV Chromosomes and Haploid Sexual Systems journal September 2018
Plant science’s next top models journal April 2020
Origin and Diversity of Plant Receptor-Like Kinases journal April 2020
Phylogenetic and CRISPR/Cas9 Studies in Deciphering the Evolutionary Trajectory and Phenotypic Impacts of Rice ERECTA Genes journal April 2018
Messages From the Past: New Insights in Plant Lectin Evolution journal January 2019
Evolutionary Developments in Plant Specialized Metabolism, Exemplified by Two Transferase Families journal June 2019
Marchantia polymorpha, a New Model Plant for Autophagy Studies journal July 2019
A Method for Evaluating Three-Dimensional Morphological Features: A Case Study Using Marchantia polymorpha journal October 2019
Evolutionary History of the Glycoside Hydrolase 3 (GH3) Family Based on the Sequenced Genomes of 48 Plants and Identification of Jasmonic Acid-Related GH3 Proteins in Solanum tuberosum journal June 2018
Jasmonates: News on Occurrence, Biosynthesis, Metabolism and Action of an Ancient Group of Signaling Compounds journal August 2018
Evolutionary and Comparative Expression Analyses of TCP Transcription Factor Gene Family in Land Plants journal July 2019
Recent Advances in Plant Chemical Biology of Jasmonates journal February 2020
Valuable Fatty Acids in Bryophytes—Production, Biosynthesis, Analysis and Applications journal November 2019
Biological roles and an evolutionary sketch of the GRF-GIF transcriptional complex in plants journal April 2019

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59 BASIC BIOLOGICAL SCIENCES
Biochemistry & Molecular Biology
Cell Biology
Marchantia polymorpha
land plant evolution
auxin
sex chromosome
charophycean algae