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Title: Machine Learning Classical Interatomic Potentials for Molecular Dynamics from First-Principles Training Data

Journal Article · · Journal of Physical Chemistry. C
ORCiD logo [1];  [2]; ORCiD logo [3];  [1];  [1];  [1]; ORCiD logo [1]; ORCiD logo [4]
  1. Argonne National Lab. (ANL), Argonne, IL (United States). Center for Nanoscale Materials
  2. Argonne National Lab. (ANL), Argonne, IL (United States). Center for Nanoscale Materials; Univ. of Louisville, KY (United States)
  3. Argonne National Lab. (ANL), Argonne, IL (United States)
  4. Argonne National Lab. (ANL), Argonne, IL (United States). Center for Nanoscale Materials; Univ. of Chicago, IL (United States). Inst. of Molecular Engineering

The ever-increasing power of modern supercomputers, along with the availability of highly scalable atomistic simulation codes, has begun to revolutionize predictive modeling of materials. In particular, molecular dynamics (MD) has led to breakthrough advances in diverse fields, including tribology, catalysis, sensing, and nanoparticle self-assembly. Additionally, recent integration of MD simulations with X-ray characterization has demonstrated promise in real-time 3-D characterization of materials on the atomic scale. The popularity of MD is driven by its applicability at disparate length/time scales, ranging from ab initio MD (hundreds of atoms and tens of picoseconds) to all-atom classical MD (millions of atoms over microseconds), and coarse-grained (CG) models (micrometers and tens of microseconds). Nevertheless, a substantial gap persists between AIMD, which is highly accurate but restricted to extremely small sizes, and those based on classical force fields (atomistic and CG) with limited accuracy but access to larger length/time scales. The accuracy and predictive power of classical MD simulations is dictated by the empirical force fields, and their capability to capture the relevant physics. Here, we discuss some of our recent work on the use of machine learning (ML) to combine the accuracy and flexibility of electronic structure calculations with the speed of classical potentials. Our ML framework attempts to bridge the significant gulf that exists between the handful of research groups that develop new interatomic potential models (often requiring several years of effort), and the increasingly large user community from academia and industry that applies these models. Our data-driven approach represents significant departure from the status quo and involves several steps including generation and manipulation of extensive training data sets through electronic structure calculations, defining novel potential functional forms, employing state-of-the-art ML algorithms to formulate highly optimized training procedures, and subsequently developing user-friendly workflow tools integrating these algorithms on high-performance computers (HPCs). In conclusion, our ML approach shows marked success in developing force fields for a wide range of materials from metals, oxides, nitrides, and heterointerfaces to two-dimensional (2D) materials.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
Grant/Contract Number:
AC02-06CH11357; AC02-05CH11231
OSTI ID:
1542944
Journal Information:
Journal of Physical Chemistry. C, Vol. 123, Issue 12; ISSN 1932-7447
Publisher:
American Chemical SocietyCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 50 works
Citation information provided by
Web of Science

References (92)

Macroscale superlubricity enabled by graphene nanoscroll formation journal May 2015
Subnanometre ligand-shell asymmetry leads to Janus-like nanoparticle membranes journal June 2015
Carbon-based tribofilms from lubricating oils journal August 2016
Perovskite nickelates as electric-field sensors in salt water journal December 2017
Habituation based synaptic plasticity and organismic learning in a quantum perovskite journal August 2017
Silicene growth through island migration and coalescence journal January 2017
Machine learnt bond order potential to model metal–organic (Co–C) heterostructures journal January 2017
Strongly correlated perovskite lithium ion shuttles journal August 2018
A lithium–oxygen battery with a long cycle life in an air-like atmosphere journal March 2018
Tuning the electrolyte network structure to invoke quasi-solid state sulfur conversion and suppress lithium dendrite formation in Li–S batteries journal August 2018
In Situ 3D Imaging of Catalysis Induced Strain in Gold Nanoparticles journal July 2016
Interplay between multiple length and time scales in complex chemical systems journal July 2010
Towards accurate prediction of catalytic activity in IrO 2 nanoclusters via first principles-based variable charge force field journal January 2015
Describing the Diverse Geometries of Gold from Nanoclusters to Bulk—A First-Principles-Based Hybrid Bond-Order Potential journal June 2016
Development of a Modified Embedded Atom Force Field for Zirconium Nitride Using Multi-Objective Evolutionary Optimization journal July 2016
Ab Initio -Based Bond Order Potential to Investigate Low Thermal Conductivity of Stanene Nanostructures journal September 2016
Unraveling the Planar-Globular Transition in Gold Nanoclusters through Evolutionary Search journal November 2016
Computer simulation of local order in condensed phases of silicon journal April 1985
Interaction potential for SiO 2 : A molecular-dynamics study of structural correlations journal June 1990
Long-range Finnis-Sinclair potentials for f.c.c. metallic alloys journal April 1991
Modified embedded-atom potentials for cubic materials and impurities journal August 1992
New empirical approach for the structure and energy of covalent systems journal April 1988
Empirical Interatomic Potential for Carbon, with Applications to Amorphous Carbon journal December 1988
Empirical chemical pseudopotential theory of molecular and metallic bonding journal May 1985
Empirical potential for hydrocarbons for use in simulating the chemical vapor deposition of diamond films journal November 1990
A second-generation reactive empirical bond order (REBO) potential energy expression for hydrocarbons journal January 2002
Modified embedded atom method potential for Al, Si, Mg, Cu, and Fe alloys journal June 2012
A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules journal May 1995
Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids journal January 1996
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations journal July 1983
An ab Initio CFF93 All-Atom Force Field for Polycarbonates journal April 1994
ReaxFF Reactive Force Field for Molecular Dynamics Simulations of Hydrocarbon Oxidation journal February 2008
ReaxFF:  A Reactive Force Field for Hydrocarbons journal October 2001
Second-generation charge-optimized many-body potential for Si / SiO 2 and amorphous silica journal December 2010
Atomistic simulations of copper oxidation and Cu/Cu 2 O interfaces using charge-optimized many-body potentials journal September 2011
Charge equilibration for molecular dynamics simulations journal April 1991
Exploration of the Conformational and Reactive Dynamics of Glycine and Diglycine on TiO 2 : Computational Investigations in the Gas Phase and in Solution journal February 2012
Is the Calcite–Water Interface Understood? Direct Comparisons of Molecular Dynamics Simulations with Specular X-ray Reflectivity Data journal February 2013
Non-equilibrium effects evidenced by vibrational spectra during the coil-to-globule transition in poly(N-isopropylacrylamide) subjected to an ultrafast heating–cooling cycle journal January 2014
Thermodynamic considerations for solubility and conformational transitions of poly-N-isopropyl-acrylamide journal January 2013
Role of Solvation Dynamics and Local Ordering of Water in Inducing Conformational Transitions in Poly( N -isopropylacrylamide) Oligomers through the LCST
  • Deshmukh, Sanket A.; Sankaranarayanan, Subramanian K. R. S.; Suthar, Kamlesh
  • The Journal of Physical Chemistry B, Vol. 116, Issue 9 https://doi.org/10.1021/jp210788u
journal February 2012
Modeling solid-state chemistry: Interatomic potentials for multicomponent systems journal March 1989
Semiempirical atomic potentials for the fcc metals Cu, Ag, Au, Ni, Pd, Pt, Al, and Pb based on first and second nearest-neighbor modified embedded atom method journal October 2003
Genetic algorithms for modelling and optimisation journal December 2005
Interpolating moving least-squares methods for fitting potential energy surfaces: Improving efficiency via local approximants journal December 2007
Gaussian-Mixture Umbrella Sampling journal March 2009
Simplifying the representation of complex free-energy landscapes using sketch-map journal July 2011
Geometric diffusions as a tool for harmonic analysis and structure definition of data: Multiscale methods journal May 2005
Molecular Dynamics with On-the-Fly Machine Learning of Quantum-Mechanical Forces journal March 2015
An Algorithm for Least-Squares Estimation of Nonlinear Parameters journal June 1963
Derivative-free optimization for parameter estimation in computational nuclear physics journal February 2015
ORBIT: Optimization by Radial Basis Function Interpolation in Trust-Regions journal January 2008
Swift: A language for distributed parallel scripting journal September 2011
Theoretical Chemistry of Gold journal August 2004
A briefing on aurophilicity journal January 2008
Structural study of gold clusters journal March 2006
The shape of Au8: gold leaf or gold nugget? journal January 2013
Structures of Neutral Au7, Au19, and Au20 Clusters in the Gas Phase journal August 2008
Evidence of hollow golden cages journal May 2006
On the Electronic and Atomic Structures of Small Au N - ( N = 4−14) Clusters:  A Photoelectron Spectroscopy and Density-Functional Study journal August 2003
Long-range Finnis–Sinclair potentials journal March 1990
Lattice relaxation at a metal surface journal June 1981
Comments on "Lattice relaxation at a metal surface" journal November 1982
Embedded-atom-method functions for the fcc metals Cu, Ag, Au, Ni, Pd, Pt, and their alloys journal June 1986
Reactive forcefield for simulating gold surfaces and nanoparticles journal June 2010
Epitaxial growth of two-dimensional stanene journal August 2015
Artificial photosynthesis for solar water-splitting journal July 2012
Characterization of an Amorphous Iridium Water-Oxidation Catalyst Electrodeposited from Organometallic Precursors journal January 2013
Domain structure for an amorphous iridium-oxide water-oxidation catalyst characterized by X-ray pair distribution function analysis journal January 2014
Structural Studies of Rutile-Type Metal Dioxides journal June 1997
High-pressure and high-temperature synthesis of a cubic IrO2 polymorph journal June 2005
Effect of spin orbit coupling and Hubbard U on the electronic structure of IrO 2 journal April 2014
Approaching chemical accuracy with density functional calculations: Diatomic energy corrections journal February 2013
On the properties of binary rutile MO 2 compounds, M = Ir, Ru, Sn, and Ti: A DFT study journal May 2013
Optimisation of accurate rutile TiO2 (110), (100), (101) and (001) surface models from periodic DFT calculations journal January 2007
New software tools for the calculation and display of isolated and attached interfacial-energy minimizing particle shapes journal August 2012
Electrolysis of water on oxide surfaces journal September 2007
Evolutionary Optimization of a Charge Transfer Ionic Potential Model for Ta/Ta-Oxide Heterointerfaces journal April 2017
A charge transfer ionic–embedded atom method potential for the O–Al–Ni–Co–Fe system journal May 2005
Electronic structure of δ -Ta 2 O 5 with oxygen vacancy: ab initio calculations and comparison with experiment journal July 2011
Unravelling the interplay of crystal structure and electronic band structure of tantalum oxide (Ta 2 O 5 ) journal January 2013
Machine Learning Force Field Parameters from Ab Initio Data journal August 2017
An implementation of artificial neural-network potentials for atomistic materials simulations: Performance for TiO2 journal March 2016
Accelerated molecular dynamics: A promising and efficient simulation method for biomolecules journal June 2004
Water Modeled As an Intermediate Element between Carbon and Silicon journal April 2009
Basis-set convergence of correlated calculations on water journal June 1997
MP2.5 and MP2.X: Approaching CCSD(T) Quality Description of Noncovalent Interaction at the Cost of a Single CCSD Iteration journal December 2012
Orbital-optimized MP2.5 and its analytic gradients: Approaching CCSD(T) quality for noncovalent interactions journal November 2014
Application of systematic sequences of wave functions to the water dimer journal April 1992
Recent developments in first-principles force fields for molecules in nanoporous materials journal January 2014
Error correction in multi-fidelity molecular dynamics simulations using functional uncertainty quantification journal April 2017
PUQ: A code for non-intrusive uncertainty propagation in computer simulations journal September 2015

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