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Title: Emergent simplicity in microbial community assembly

Abstract

Not provided.

Authors:
ORCiD logo; ORCiD logo; ORCiD logo; ORCiD logo; ORCiD logo; ORCiD logo; ; ORCiD logo; ORCiD logo
Publication Date:
Research Org.:
Boston Univ., MA (United States)
Sponsoring Org.:
USDOE Office of Science (SC)
OSTI Identifier:
1541698
DOE Contract Number:  
SC0012627
Resource Type:
Journal Article
Journal Name:
Science
Additional Journal Information:
Journal Volume: 361; Journal Issue: 6401; Journal ID: ISSN 0036-8075
Publisher:
AAAS
Country of Publication:
United States
Language:
English
Subject:
Science & Technology - Other Topics

Citation Formats

Goldford, Joshua E., Lu, Nanxi, Bajić, Djordje, Estrela, Sylvie, Tikhonov, Mikhail, Sanchez-Gorostiaga, Alicia, Segrè, Daniel, Mehta, Pankaj, and Sanchez, Alvaro. Emergent simplicity in microbial community assembly. United States: N. p., 2018. Web. doi:10.1126/science.aat1168.
Goldford, Joshua E., Lu, Nanxi, Bajić, Djordje, Estrela, Sylvie, Tikhonov, Mikhail, Sanchez-Gorostiaga, Alicia, Segrè, Daniel, Mehta, Pankaj, & Sanchez, Alvaro. Emergent simplicity in microbial community assembly. United States. doi:10.1126/science.aat1168.
Goldford, Joshua E., Lu, Nanxi, Bajić, Djordje, Estrela, Sylvie, Tikhonov, Mikhail, Sanchez-Gorostiaga, Alicia, Segrè, Daniel, Mehta, Pankaj, and Sanchez, Alvaro. Thu . "Emergent simplicity in microbial community assembly". United States. doi:10.1126/science.aat1168.
@article{osti_1541698,
title = {Emergent simplicity in microbial community assembly},
author = {Goldford, Joshua E. and Lu, Nanxi and Bajić, Djordje and Estrela, Sylvie and Tikhonov, Mikhail and Sanchez-Gorostiaga, Alicia and Segrè, Daniel and Mehta, Pankaj and Sanchez, Alvaro},
abstractNote = {Not provided.},
doi = {10.1126/science.aat1168},
journal = {Science},
issn = {0036-8075},
number = 6401,
volume = 361,
place = {United States},
year = {2018},
month = {8}
}

Works referenced in this record:

The Microbial Engines That Drive Earth's Biogeochemical Cycles
journal, May 2008


Structure and function of the global ocean microbiome
journal, May 2015


The Application of Ecological Theory Toward an Understanding of the Human Microbiome
journal, June 2012


A core gut microbiome in obese and lean twins
journal, November 2008

  • Turnbaugh, Peter J.; Hamady, Micah; Yatsunenko, Tanya
  • Nature, Vol. 457, Issue 7228
  • DOI: 10.1038/nature07540

High taxonomic variability despite stable functional structure across microbial communities
journal, December 2016

  • Louca, Stilianos; Jacques, Saulo M. S.; Pires, Aliny P. F.
  • Nature Ecology & Evolution, Vol. 1, Issue 1
  • DOI: 10.1038/s41559-016-0015

Decoupling function and taxonomy in the global ocean microbiome
journal, September 2016


Microbiomes in light of traits: A phylogenetic perspective
journal, November 2015


Bacterial community assembly based on functional genes rather than species
journal, August 2011

  • Burke, C.; Steinberg, P.; Rusch, D.
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 34
  • DOI: 10.1073/pnas.1101591108

Diet rapidly and reproducibly alters the human gut microbiome
journal, December 2013

  • David, Lawrence A.; Maurice, Corinne F.; Carmody, Rachel N.
  • Nature, Vol. 505, Issue 7484
  • DOI: 10.1038/nature12820

Community structure follows simple assembly rules in microbial microcosms
journal, March 2017

  • Friedman, Jonathan; Higgins, Logan M.; Gore, Jeff
  • Nature Ecology & Evolution, Vol. 1, Issue 5
  • DOI: 10.1038/s41559-017-0109

Stochastic assembly produces heterogeneous communities in the Caenorhabditis elegans intestine
journal, March 2017


Contingency and Statistical Laws in Replicate Microbial Closed Ecosystems
journal, May 2012


Competition, Not Cooperation, Dominates Interactions among Culturable Microbial Species
journal, October 2012


The ecology of the microbiome: Networks, competition, and stability
journal, November 2015


Beyond pairwise mechanisms of species coexistence in complex communities
journal, June 2017

  • Levine, Jonathan M.; Bascompte, Jordi; Adler, Peter B.
  • Nature, Vol. 546, Issue 7656
  • DOI: 10.1038/nature22898

High-order species interactions shape ecosystem diversity
journal, August 2016

  • Bairey, Eyal; Kelsic, Eric D.; Kishony, Roy
  • Nature Communications, Vol. 7, Issue 1
  • DOI: 10.1038/ncomms12285

Competition, Habitat Selection, and Character Displacement in a Patchy Environment
journal, June 1964

  • MacArthur, R.; Levins, R.
  • Proceedings of the National Academy of Sciences, Vol. 51, Issue 6
  • DOI: 10.1073/pnas.51.6.1207

Partitioning of Resources and the Outcome of Interspecific Competition: A Model and Some General Considerations
journal, March 1973

  • Stewart, Frank M.; Levin, Bruce R.
  • The American Naturalist, Vol. 107, Issue 954
  • DOI: 10.1086/282825

Explaining microbial population genomics through phage predation
journal, November 2009

  • Rodriguez-Valera, Francisco; Martin-Cuadrado, Ana-Belen; Rodriguez-Brito, Beltran
  • Nature Reviews Microbiology, Vol. 7, Issue 11
  • DOI: 10.1038/nrmicro2235

Counteraction of antibiotic production and degradation stabilizes microbial communities
journal, May 2015

  • Kelsic, Eric D.; Zhao, Jeffrey; Vetsigian, Kalin
  • Nature, Vol. 521, Issue 7553
  • DOI: 10.1038/nature14485

Overflow metabolism in Escherichia coli results from efficient proteome allocation
journal, December 2015

  • Basan, Markus; Hui, Sheng; Okano, Hiroyuki
  • Nature, Vol. 528, Issue 7580
  • DOI: 10.1038/nature15765

Extensive exometabolome analysis reveals extended overflow metabolism in various microorganisms
journal, January 2012

  • Paczia, Nicole; Nilgen, Anke; Lehmann, Tobias
  • Microbial Cell Factories, Vol. 11, Issue 1
  • DOI: 10.1186/1475-2859-11-122

Evolution of species interactions in a biofilm community
journal, February 2007

  • Hansen, Susse Kirkelund; Rainey, Paul B.; Haagensen, Janus A. J.
  • Nature, Vol. 445, Issue 7127
  • DOI: 10.1038/nature05514

Exometabolite niche partitioning among sympatric soil bacteria
journal, September 2015

  • Baran, Richard; Brodie, Eoin L.; Mayberry-Lewis, Jazmine
  • Nature Communications, Vol. 6, Issue 1
  • DOI: 10.1038/ncomms9289

Microbial interactions lead to rapid micro-scale successions on model marine particles
journal, June 2016

  • Datta, Manoshi S.; Sliwerska, Elzbieta; Gore, Jeff
  • Nature Communications, Vol. 7, Issue 1
  • DOI: 10.1038/ncomms11965

Adaptive radiation in a heterogeneous environment
journal, July 1998

  • Rainey, Paul B.; Travisano, Michael
  • Nature, Vol. 394, Issue 6688
  • DOI: 10.1038/27900

Mechanisms of Maintenance of Species Diversity
journal, November 2000


Coexistence of Two Asexual Strains on a Single Resource
journal, March 1972


Effect of water flow and chemical environment on microbiota growth and composition in the human colon
journal, June 2017

  • Cremer, Jonas; Arnoldini, Markus; Hwa, Terence
  • Proceedings of the National Academy of Sciences, Vol. 114, Issue 25
  • DOI: 10.1073/pnas.1619598114

Modifying and reacting to the environmental pH can drive bacterial interactions
journal, March 2018


Species packing and competitive equilibrium for many species
journal, May 1970


Taxonomic resolution, ecotypes and the biogeography of Prochlorococcus
journal, April 2009


Genetic evidence that Nkx2.2 acts primarily downstream of Neurog3 in pancreatic endocrine lineage development
journal, January 2017

  • Churchill, Angela J.; Gutiérrez, Giselle Dominguez; Singer, Ruth A.
  • eLife, Vol. 6
  • DOI: 10.7554/eLife.20010

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
journal, August 2013

  • Langille, Morgan G. I.; Zaneveld, Jesse; Caporaso, J. Gregory
  • Nature Biotechnology, Vol. 31, Issue 9
  • DOI: 10.1038/nbt.2676

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
journal, June 2013

  • Kozich, James J.; Westcott, Sarah L.; Baxter, Nielson T.
  • Applied and Environmental Microbiology, Vol. 79, Issue 17
  • DOI: 10.1128/AEM.01043-13

QIIME allows analysis of high-throughput community sequencing data
journal, April 2010

  • Caporaso, J. Gregory; Kuczynski, Justin; Stombaugh, Jesse
  • Nature Methods, Vol. 7, Issue 5
  • DOI: 10.1038/nmeth.f.303

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
journal, November 2012

  • Quast, Christian; Pruesse, Elmar; Yilmaz, Pelin
  • Nucleic Acids Research, Vol. 41, Issue D1
  • DOI: 10.1093/nar/gks1219

MacArthur's consumer-resource model
journal, February 1990


Metabolic Trade-Offs Promote Diversity in a Model Ecosystem
journal, January 2017


Adaptive radiation by waves of gene transfer leads to fine-scale resource partitioning in marine microbes
journal, September 2016

  • Hehemann, Jan-Hendrik; Arevalo, Philip; Datta, Manoshi S.
  • Nature Communications, Vol. 7, Issue 1
  • DOI: 10.1038/ncomms12860