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Title: The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization

Journal Article · · The Plant Journal
DOI:https://doi.org/10.1111/tpj.13781· OSTI ID:1541632
 [1];  [1];  [2];  [2];  [3];  [2];  [3];  [3];  [4];  [4];  [1];  [4];  [5];  [5];  [4]
  1. Interdisciplinary Program in Genetics, Texas A&M University, College Station TX 77843 USA; Department of Biochemistry and Biophysics, Texas A&M University, College Station TX 77843 USA
  2. HudsonAlpha Institute for Biotechnology, Huntsville AL 35806 USA
  3. Department of Energy, Joint Genome Institute, Walnut Creek CA 94598 USA
  4. Department of Biochemistry and Biophysics, Texas A&M University, College Station TX 77843 USA
  5. HudsonAlpha Institute for Biotechnology, Huntsville AL 35806 USA; Department of Energy, Joint Genome Institute, Walnut Creek CA 94598 USA

Not provided.

Research Organization:
Texas A & M Univ., College Station, TX (United States). Texas A & M AgriLife Research; Univ. of Wisconsin, Madison, WI (United States); Univ. of California, Oakland, CA (United States)
Sponsoring Organization:
USDOE Advanced Research Projects Agency - Energy (ARPA-E)
DOE Contract Number:
AR0000596; FC02-07ER64494; SC0012629; AC02-05CH11231
OSTI ID:
1541632
Journal Information:
The Plant Journal, Vol. 93, Issue 2; ISSN 0960-7412
Publisher:
Society for Experimental Biology
Country of Publication:
United States
Language:
English

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Constructing a Reference Genome in a Single Lab: The Possibility to Use Oxford Nanopore Technology journal August 2019
Genomic Signatures of Adaptation to a Precipitation Gradient in Nigerian Sorghum journal August 2018
Conserved defense responses between maize and sorghum to Exserohilum turcicum journal February 2020
Genome wide association analysis of sorghum mini core lines regarding anthracnose, downy mildew, and head smut journal May 2019
The Challenge of Analyzing the Sugarcane Genome journal May 2018
Large‐scale GWAS in sorghum reveals common genetic control of grain size among cereals journal November 2019
Sorghum stem aerenchyma formation is regulated by SbNAC_D during internode development journal November 2018
Transcriptome and metabolome reveal distinct carbon allocation patterns during internode sugar accumulation in different sorghum genotypes journal September 2018
Cross-Species Root Transcriptional Network Analysis Highlights Conserved Modules in Response to Nitrate between Maize and Sorghum journal February 2020
An update to database TraVA: organ-specific cold stress response in Arabidopsis thaliana journal February 2019
Developmental dynamics of stem starch accumulation in Sorghum bicolor journal August 2018
Data Integration in Poplar: ‘Omics Layers and Integration Strategies journal September 2019
QTL mapping and validation of fertility restoration in West African sorghum A1 cytoplasm and identification of a potential causative mutation for Rf2 journal August 2018
A chromosome-scale assembly of the sorghum genome using nanopore sequencing and optical mapping journal November 2018
Fertility of Pedicellate Spikelets in Sorghum Is Controlled by a Jasmonic Acid Regulatory Module journal October 2019
Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop journal November 2019
An updated gene atlas for maize reveals organ‐specific and stress‐induced genes journal January 2019
Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses journal December 2019
A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism journal May 2019
A Large-Scale Genome-Wide Association Analyses of Ethiopian Sorghum Landrace Collection Reveal Loci Associated With Important Traits journal May 2019
Gene Expression Maps in Plants: Current State and Prospects journal August 2019
Correction to: Common metabolic networks contribute to carbon sink strength of sorghum internodes: implications for bioenergy improvement journal December 2019
Genome-Wide Analysis of Sorghum GT47 Family Reveals Functional Divergences of MUR3-Like Genes journal December 2018