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Title: Ammonia-oxidizing bacteria are the primary N 2 O producers in an ammonia-oxidizing archaea dominated alkaline agricultural soil


Not provided.

ORCiD logo [1];  [1];  [1];  [1];  [2];  [3];  [1]
  1. Department of Civil and Environmental EngineeringUniversity of WashingtonSeattle Washington USA
  2. Department of Crop and Soil SciencesWashington State UniversityProsser Washington USA
  3. Department of Earth System ScienceStanford UniversityStanford California USA
Publication Date:
Research Org.:
Univ. of Washington, Seattle, WA (United States)
Sponsoring Org.:
USDOE Office of Science (SC)
OSTI Identifier:
DOE Contract Number:  
Resource Type:
Journal Article
Journal Name:
Environmental Microbiology
Additional Journal Information:
Journal Volume: 20; Journal Issue: 6; Journal ID: ISSN 1462-2912
Country of Publication:
United States

Citation Formats

Meinhardt, Kelley A., Stopnisek, Nejc, Pannu, Manmeet W., Strand, Stuart E., Fransen, Steven C., Casciotti, Karen L., and Stahl, David A. Ammonia-oxidizing bacteria are the primary N2 O producers in an ammonia-oxidizing archaea dominated alkaline agricultural soil. United States: N. p., 2018. Web. doi:10.1111/1462-2920.14246.
Meinhardt, Kelley A., Stopnisek, Nejc, Pannu, Manmeet W., Strand, Stuart E., Fransen, Steven C., Casciotti, Karen L., & Stahl, David A. Ammonia-oxidizing bacteria are the primary N2 O producers in an ammonia-oxidizing archaea dominated alkaline agricultural soil. United States. doi:10.1111/1462-2920.14246.
Meinhardt, Kelley A., Stopnisek, Nejc, Pannu, Manmeet W., Strand, Stuart E., Fransen, Steven C., Casciotti, Karen L., and Stahl, David A. Fri . "Ammonia-oxidizing bacteria are the primary N2 O producers in an ammonia-oxidizing archaea dominated alkaline agricultural soil". United States. doi:10.1111/1462-2920.14246.
title = {Ammonia-oxidizing bacteria are the primary N2 O producers in an ammonia-oxidizing archaea dominated alkaline agricultural soil},
author = {Meinhardt, Kelley A. and Stopnisek, Nejc and Pannu, Manmeet W. and Strand, Stuart E. and Fransen, Steven C. and Casciotti, Karen L. and Stahl, David A.},
abstractNote = {Not provided.},
doi = {10.1111/1462-2920.14246},
journal = {Environmental Microbiology},
issn = {1462-2912},
number = 6,
volume = 20,
place = {United States},
year = {2018},
month = {6}

Works referenced in this record:

Global agriculture and nitrous oxide emissions
journal, May 2012

  • Reay, Dave S.; Davidson, Eric A.; Smith, Keith A.
  • Nature Climate Change, Vol. 2, Issue 6
  • DOI: 10.1038/nclimate1458

Nitrifier denitrification as a distinct and significant source of nitrous oxide from soil
journal, January 2011

Nitrification driven by bacteria and not archaea in nitrogen-rich grassland soils
journal, August 2009

  • Di, H. J.; Cameron, K. C.; Shen, J. P.
  • Nature Geoscience, Vol. 2, Issue 9
  • DOI: 10.1038/ngeo613

Ecophysiological Characterization of Ammonia-Oxidizing Archaea and Bacteria from Freshwater
journal, June 2012

  • French, Elizabeth; Kozlowski, Jessica A.; Mukherjee, Maitreyee
  • Applied and Environmental Microbiology, Vol. 78, Issue 16
  • DOI: 10.1128/AEM.00432-12

Role of nitrifier denitrification in the production of nitrous oxide
journal, October 2001

Meta-analysis reveals ammonia-oxidizing bacteria respond more strongly to nitrogen addition than ammonia-oxidizing archaea
journal, August 2016

Simulated Effects of Soil Texture on Nitrous Oxide Emission Factors from Corn and Soybean Agroecosystems in Wisconsin
journal, January 2016

  • Gaillard, Richard; Duval, Benjamin D.; Osterholz, William R.
  • Journal of Environment Quality, Vol. 45, Issue 5
  • DOI: 10.2134/jeq2016.03.0112

Archaea produce lower yields of N 2 O than bacteria during aerobic ammonia oxidation in soil : N
journal, April 2016

  • Hink, Linda; Nicol, Graeme W.; Prosser, James I.
  • Environmental Microbiology, Vol. 19, Issue 12
  • DOI: 10.1111/1462-2920.13282

Aerobic nitrous oxide production through N-nitrosating hybrid formation in ammonia-oxidizing archaea
journal, January 2014

  • Stieglmeier, Michaela; Mooshammer, Maria; Kitzler, Barbara
  • The ISME Journal, Vol. 8, Issue 5
  • DOI: 10.1038/ismej.2013.220

Nitrosospira spp. can produce nitrous oxide via a nitrifier denitrification pathway
journal, February 2006

Isotopic Signature of N2O Produced by Marine Ammonia-Oxidizing Archaea
journal, July 2011

Impact of different bioenergy crops on N-cycling bacterial and archaeal communities in soil: Impact of bioenergy crops on soil N-cycling archaea and bacteria
journal, August 2012

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria
journal, September 2009

  • Martens-Habbena, Willm; Berube, Paul M.; Urakawa, Hidetoshi
  • Nature, Vol. 461, Issue 7266
  • DOI: 10.1038/nature08465

Distinguishing Nitrous Oxide Production from Nitrification and Denitrification on the Basis of Isotopomer Abundances
journal, January 2006

Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil
journal, April 2011

  • Tourna, M.; Stieglmeier, M.; Spang, A.
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 20
  • DOI: 10.1073/pnas.1013488108

Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil
journal, July 2009

Phylogeny of All Recognized Species of Ammonia Oxidizers Based on Comparative 16S rRNA and amoA Sequence Analysis: Implications for Molecular Diversity Surveys
journal, December 2000

Differential contributions of ammonia oxidizers and nitrite oxidizers to nitrification in four paddy soils
journal, October 2014

Archaea rather than bacteria control nitrification in two agricultural acidic soils: Archaeal nitrification in acidic soils
journal, October 2010

Archaea predominate among ammonia-oxidizing prokaryotes in soils
journal, August 2006

N-related greenhouse gases in North America: innovations for a sustainable future
journal, November 2014

Acetylene inhibition of nitrous oxide reduction and measurement of denitrification and nitrogen fixation in soil
journal, January 1977

Ammonia-Oxidizing Bacteria: A Model for Molecular Microbial Ecology
journal, October 2001

Evaluation of revised polymerase chain reaction primers for more inclusive quantification of ammonia-oxidizing archaea and bacteria: Revised primers for AOA and AOB quantification
journal, February 2015

  • Meinhardt, Kelley A.; Bertagnolli, Anthony; Pannu, Manmeet W.
  • Environmental Microbiology Reports, Vol. 7, Issue 2
  • DOI: 10.1111/1758-2229.12259

Contribution of nitrification and denitrification to N 2 O production in peat, clay and loamy sand soils under different soil moisture conditions
journal, October 2004

Diversity, Physiology, and Niche Differentiation of Ammonia-Oxidizing Archaea
journal, August 2012

  • Hatzenpichler, Roland
  • Applied and Environmental Microbiology, Vol. 78, Issue 21
  • DOI: 10.1128/AEM.01960-12

Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene: Archaeal ammonia oxidation in soil
journal, October 2009

Ammonia-oxidizing archaea have more important role than ammonia-oxidizing bacteria in ammonia oxidation of strongly acidic soils
journal, December 2011

Biomass Production and Nutrient Removal by Switchgrass under Irrigation
journal, January 2015

Autotrophic growth of nitrifying community in an agricultural soil
journal, February 2011

  • Xia, Weiwei; Zhang, Caixia; Zeng, Xiaowei
  • The ISME Journal, Vol. 5, Issue 7
  • DOI: 10.1038/ismej.2011.5

Nitrous oxide emissions from grazed grassland as affected by a nitrification inhibitor, dicyandiamide, and relationships with ammonia-oxidizing bacteria and archaea
journal, January 2010

  • Di, Hong J.; Cameron, Keith C.; Sherlock, Rob R.
  • Journal of Soils and Sediments, Vol. 10, Issue 5
  • DOI: 10.1007/s11368-009-0174-x

Abiotic nitrous oxide production from hydroxylamine in soils and their dependence on soil properties
journal, May 2015

Fully automated system for stable isotopic analyses of dissolved nitrous oxide at natural abundance levels
journal, January 2010

  • McIlvin, Matthew R.; Casciotti, Karen L.
  • Limnology and Oceanography: Methods, Vol. 8
  • DOI: 10.4319/lom.2010.8.0054

Thaumarchaeal Ammonia Oxidation in an Acidic Forest Peat Soil Is Not Influenced by Ammonium Amendment
journal, October 2010

  • Stopnisek, N.; Gubry-Rangin, C.; Hofferle, S.
  • Applied and Environmental Microbiology, Vol. 76, Issue 22
  • DOI: 10.1128/AEM.00595-10

Use of Aliphatic n -Alkynes To Discriminate Soil Nitrification Activities of Ammonia-Oxidizing Thaumarchaea and Bacteria
journal, August 2013

  • Taylor, Anne E.; Vajrala, Neeraja; Giguere, Andrew T.
  • Applied and Environmental Microbiology, Vol. 79, Issue 21
  • DOI: 10.1128/AEM.01928-13

Biogeochemical controls and isotopic signatures of nitrous oxide production by a marine ammonia-oxidizing bacterium
journal, January 2010

Links between Ammonia Oxidizer Community Structure, Abundance, and Nitrification Potential in Acidic Soils
journal, May 2011

  • Yao, Huaiying; Gao, Yangmei; Nicol, Graeme W.
  • Applied and Environmental Microbiology, Vol. 77, Issue 13
  • DOI: 10.1128/AEM.00136-11

Influence of corn, switchgrass, and prairie cropping systems on soil microbial communities in the upper Midwest of the United States
journal, December 2015

  • Jesus, Ederson da C.; Liang, Chao; Quensen, John F.
  • GCB Bioenergy, Vol. 8, Issue 2
  • DOI: 10.1111/gcbb.12289

Hotspots of soil N2O emission enhanced through water absorption by plant residue
journal, June 2017

  • Kravchenko, A. N.; Toosi, E. R.; Guber, A. K.
  • Nature Geoscience, Vol. 10, Issue 7
  • DOI: 10.1038/ngeo2963

Carbon Sequestration under Irrigated Switchgrass ( L.) Production
journal, January 2010

  • Collins, H. P.; Smith, J. L.; Fransen, S.
  • Soil Science Society of America Journal, Vol. 74, Issue 6
  • DOI: 10.2136/sssaj2010.0020

Isolation of ‘ Candidatus Nitrosocosmicus franklandus’, a novel ureolytic soil archaeal ammonia oxidiser with tolerance to high ammonia concentration
journal, March 2016

  • Lehtovirta-Morley, Laura E.; Ross, Jenna; Hink, Linda
  • FEMS Microbiology Ecology, Vol. 92, Issue 5
  • DOI: 10.1093/femsec/fiw057

Isotopocule analysis of biologically produced nitrous oxide in various environments: ISOTOPOCULE ANALYSIS OF BIOLOGICAL N
journal, April 2015

  • Toyoda, Sakae; Yoshida, Naohiro; Koba, Keisuke
  • Mass Spectrometry Reviews, Vol. 36, Issue 2
  • DOI: 10.1002/mas.21459

Ammonia oxidation: different niches for bacteria and archaea?
journal, July 2010

15N-depleted N2O as a product of nitrification
journal, October 1988

Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms
journal, January 2011

  • Verhamme, Daniel T.; Prosser, James I.; Nicol, Graeme W.
  • The ISME Journal, Vol. 5, Issue 6
  • DOI: 10.1038/ismej.2010.191

Current insights into the autotrophic thaumarchaeal ammonia oxidation in acidic soils
journal, December 2012

Production of oceanic nitrous oxide by ammonia-oxidizing archaea
journal, January 2012

Microbial regulation of terrestrial nitrous oxide formation: understanding the biological pathways for prediction of emission rates
journal, April 2015

  • Hu, Hang-Wei; Chen, Deli; He, Ji-Zheng
  • FEMS Microbiology Reviews, Vol. 39, Issue 5
  • DOI: 10.1093/femsre/fuv021

Multi-factorial drivers of ammonia oxidizer communities: evidence from a national soil survey: Multi-factorial drivers of ammonia oxidizer communities
journal, May 2013

  • Yao, Huaiying; Campbell, Colin D.; Chapman, Stephen J.
  • Environmental Microbiology, Vol. 15, Issue 9
  • DOI: 10.1111/1462-2920.12141

Agricultural land usage transforms nitrifier population ecology: Land management shifts impact nitrifying populations
journal, January 2016

  • Bertagnolli, Anthony D.; McCalmont, Dylan; Meinhardt, Kelley A.
  • Environmental Microbiology, Vol. 18, Issue 6
  • DOI: 10.1111/1462-2920.13114