Integration of New Genes into Cellular Networks, and Their Structural Maturation
|
journal
|
September 2013 |
Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis
|
journal
|
March 2002 |
Basic local alignment search tool
|
journal
|
October 1990 |
Evolution of New Functions De Novo and from Preexisting Genes
|
journal
|
June 2015 |
Estimating intrinsic structural preferences of de novo emerging random-sequence proteins: Is aggregation the main bottleneck?
|
journal
|
June 2012 |
Genetic Recombination Is Targeted towards Gene Promoter Regions in Dogs
|
journal
|
December 2013 |
Evolutionary Systems Biology of Amino Acid Biosynthetic Cost in Yeast
|
journal
|
August 2010 |
High GC content causes orphan proteins to be intrinsically disordered
|
journal
|
March 2017 |
Evidence for de Novo Evolution of Testis-Expressed Genes in the Drosophila yakuba / Drosophila erecta Clade
|
journal
|
April 2007 |
Recently Evolved Genes Identified From Drosophila yakuba and D. erecta Accessory Gland Expressed Sequence Tags
|
journal
|
December 2005 |
Estimating the Phanerozoic history of the Ascomycota lineages: Combining fossil and molecular data
|
journal
|
September 2014 |
Dating divergences in the Fungal Tree of Life: review and new analyses
|
journal
|
November 2006 |
A positive but complex association between meiotic double-strand break hotspots and open chromatin in Saccharomyces cerevisiae
|
journal
|
October 2009 |
How do new proteins arise?
|
journal
|
June 2010 |
Emergence of de novo proteins from ‘dark genomic matter’ by ‘grow slow and moult’
|
journal
|
October 2015 |
De Novo Origination of a New Protein-Coding Gene in Saccharomyces cerevisiae
|
journal
|
May 2008 |
Relaxed Purifying Selection and Possibly High Rate of Adaptation in Primate Lineage-Specific Genes
|
journal
|
January 2010 |
Codon adaptation index as a measure of dominating codon bias
|
journal
|
October 2003 |
Proto-genes and de novo gene birth
|
journal
|
June 2012 |
Hearing silence: non-neutral evolution at synonymous sites in mammals
|
journal
|
February 2006 |
Emergence, Retention and Selection: A Trilogy of Origination for Functional De Novo Proteins from Ancestral LncRNAs in Primates
|
journal
|
July 2015 |
New Genes in Drosophila Quickly Become Essential
|
journal
|
December 2010 |
Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters
|
journal
|
September 2013 |
Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
|
journal
|
December 2008 |
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
|
journal
|
November 2008 |
A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages
|
journal
|
November 2007 |
Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana
|
journal
|
February 2011 |
IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
|
journal
|
June 2005 |
An Efficient Method for Exploring the Space of Gene Tree/Species Tree Reconciliations in a Probabilistic Framework
|
journal
|
January 2012 |
Biased Gene Conversion and the Evolution of Mammalian Genomic Landscapes
|
journal
|
September 2009 |
An efficient algorithm for large-scale detection of protein families
|
journal
|
April 2002 |
Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins
|
journal
|
September 2004 |
Pfam: the protein families database
|
journal
|
November 2013 |
Regularization Paths for Generalized Linear Models via Coordinate Descent
|
journal
|
January 2010 |
Bidirectional Promoters as Important Drivers for the Emergence of Species-Specific Transcripts
|
journal
|
February 2013 |
De Novo Genes Arise at a Slow but Steady Rate along the Primate Lineage and Have Been Subject to Incomplete Lineage Sorting
|
journal
|
April 2016 |
The One Hour Yeast Proteome
|
journal
|
October 2013 |
Evolution and tinkering
|
journal
|
June 1977 |
Reciprocal crossover asymmetry and meiotic drive in a human recombination hot spot
|
journal
|
June 2002 |
Many lncRNAs, 5’UTRs, and pseudogenes are translated and some are likely to express functional proteins
|
journal
|
December 2015 |
Origins, evolution, and phenotypic impact of new genes
|
journal
|
July 2010 |
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
|
journal
|
January 2013 |
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
|
journal
|
March 2004 |
Conservation of divergent transcription in fungi
|
journal
|
May 2008 |
More than just orphans: are taxonomically-restricted genes important in evolution?
|
journal
|
September 2009 |
Recent de novo origin of human protein-coding genes
|
journal
|
September 2009 |
Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen
|
journal
|
January 2001 |
High Guanine and Cytosine Content Increases mRNA Levels in Mammalian Cells
|
journal
|
May 2006 |
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
|
journal
|
March 2016 |
Nonparadoxical evolutionary stability of the recombination initiation landscape in yeast
|
journal
|
November 2015 |
The properties of meiotic gene conversion important in its effects on evolution
|
journal
|
August 1984 |
Evolutionary Origins of Genomic Repertoires in Bacteria
|
journal
|
April 2005 |
Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression
|
journal
|
June 2006 |
A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand
|
journal
|
March 2010 |
On the Origin of De Novo Genes in Arabidopsis thaliana Populations
|
journal
|
July 2016 |
Remote homology and the functions of metagenomic dark matter
|
journal
|
July 2015 |
The origin of new genes: glimpses from the young and old
|
journal
|
November 2003 |
High-resolution mapping of meiotic crossovers and non-crossovers in yeast
|
journal
|
July 2008 |
Acquisition of prokaryotic genes by fungal genomes
|
journal
|
January 2010 |
Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage
|
journal
|
August 2015 |
The PSIPRED protein structure prediction server
|
journal
|
April 2000 |
New genes from non-coding sequence: the role of de novo protein-coding genes in eukaryotic evolutionary innovation
|
journal
|
September 2015 |
Open questions in the study of de novo genes: what, how and why
|
journal
|
July 2016 |
Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions
|
journal
|
April 2013 |
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
|
journal
|
October 2014 |
Evaluating Phylostratigraphic Evidence for Widespread De Novo Gene Birth in Genome Evolution
|
journal
|
January 2016 |
Further Simulations and Analyses Demonstrate Open Problems of Phylostratigraphy
|
journal
|
June 2017 |
Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
|
journal
|
January 2009 |
Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution
|
journal
|
January 2013 |
Fast turnover of genome transcription across evolutionary time exposes entire non-coding DNA to de novo gene emergence
|
journal
|
February 2016 |
A Hierarchical Combination of Factors Shapes the Genome-wide Topography of Yeast Meiotic Recombination Initiation
|
journal
|
March 2011 |
Comparison of DNA Sequences with Protein Sequences
|
journal
|
November 1997 |
EMBOSS: The European Molecular Biology Open Software Suite
|
journal
|
June 2000 |
Insertion of Horizontally Transferred Genes within Conserved Syntenic Regions of Yeast Genomes
|
journal
|
August 2009 |
Origins of De Novo Genes in Human and Chimpanzee
|
journal
|
December 2015 |
The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus
|
journal
|
June 2011 |
Genes from scratch – the evolutionary fate of de novo genes
|
journal
|
April 2015 |
Darwinian alchemy: Human genes from noncoding DNA
|
journal
|
October 2009 |
Stable recombination hotspots in birds
|
journal
|
November 2015 |
Protein homology detection by HMM-HMM comparison
|
journal
|
November 2004 |
Comparative genomics of protoploid Saccharomycetaceae
|
journal
|
June 2009 |
Rose: generating sequence families
|
journal
|
March 1998 |
Estimating divergence times in large molecular phylogenies
|
journal
|
November 2012 |
The evolutionary origin of orphan genes
|
journal
|
August 2011 |
Role of Low-Complexity Sequences in the Formation of Novel Protein Coding Sequences
|
journal
|
October 2011 |
Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus
|
journal
|
May 2016 |
Young genes are highly disordered as predicted by the preadaptation hypothesis of de novo gene birth
|
journal
|
April 2017 |
Putatively Noncoding Transcripts Show Extensive Association with Ribosomes
|
journal
|
January 2011 |
Evolution and function of de novo originated genes
|
journal
|
May 2013 |
Divergent Transcription: A Driving Force for New Gene Origination?
|
journal
|
November 2013 |
Hominoid-Specific De Novo Protein-Coding Genes Originating from Long Non-Coding RNAs
|
journal
|
September 2012 |
PAML 4: Phylogenetic Analysis by Maximum Likelihood
|
journal
|
April 2007 |
De novo origin of new genes with introns in Plasmodium vivax
|
journal
|
January 2011 |
Estimating Synonymous and Nonsynonymous Substitution Rates Under Realistic Evolutionary Models
|
journal
|
January 2000 |
Origin and Spread of de Novo Genes in Drosophila melanogaster Populations
|
journal
|
January 2014 |
On the origin of new genes in Drosophila
|
journal
|
July 2008 |