skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Characterization of endogenous promoters for control of recombinant gene expression in Acidithiobacillus ferrooxidans: Endogenous Promoters for Use in A. ferrooxidans

Abstract

Not provided.

Authors:
 [1];  [2];  [2]
  1. Department of Physiology & Cellular Biophysics, Columbia University, New York NY USA
  2. Department of Chemical Engineering, Columbia University, New York NY USA
Publication Date:
Research Org.:
Columbia Univ., New York, NY (United States)
Sponsoring Org.:
USDOE Advanced Research Projects Agency - Energy (ARPA-E)
OSTI Identifier:
1537500
DOE Contract Number:  
AR0000060
Resource Type:
Journal Article
Journal Name:
Biotechnology and Applied Biochemistry
Additional Journal Information:
Journal Volume: 64; Journal Issue: 6; Journal ID: ISSN 0885-4513
Publisher:
Wiley
Country of Publication:
United States
Language:
English
Subject:
Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology

Citation Formats

Kernan, Timothy, West, Alan C., and Banta, Scott. Characterization of endogenous promoters for control of recombinant gene expression in Acidithiobacillus ferrooxidans: Endogenous Promoters for Use in A. ferrooxidans. United States: N. p., 2017. Web. doi:10.1002/bab.1546.
Kernan, Timothy, West, Alan C., & Banta, Scott. Characterization of endogenous promoters for control of recombinant gene expression in Acidithiobacillus ferrooxidans: Endogenous Promoters for Use in A. ferrooxidans. United States. doi:10.1002/bab.1546.
Kernan, Timothy, West, Alan C., and Banta, Scott. Tue . "Characterization of endogenous promoters for control of recombinant gene expression in Acidithiobacillus ferrooxidans: Endogenous Promoters for Use in A. ferrooxidans". United States. doi:10.1002/bab.1546.
@article{osti_1537500,
title = {Characterization of endogenous promoters for control of recombinant gene expression in Acidithiobacillus ferrooxidans: Endogenous Promoters for Use in A. ferrooxidans},
author = {Kernan, Timothy and West, Alan C. and Banta, Scott},
abstractNote = {Not provided.},
doi = {10.1002/bab.1546},
journal = {Biotechnology and Applied Biochemistry},
issn = {0885-4513},
number = 6,
volume = 64,
place = {United States},
year = {2017},
month = {5}
}

Works referenced in this record:

Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications
journal, January 2008


Heavy Metal Mining Using Microbes
journal, October 2002


Engineering A cidithiobacillus ferrooxidans growth media for enhanced electrochemical processing
journal, September 2014

  • Li, Xiaozheng; Mercado, Roel; Berlinger, Sarah
  • AIChE Journal, Vol. 60, Issue 12
  • DOI: 10.1002/aic.14628

Engineering the iron-oxidizing chemolithoautotroph Acidithiobacillus ferrooxidans for biochemical production : Metabolic Engineering of
journal, October 2015

  • Kernan, Timothy; Majumdar, Sudipta; Li, Xiaozheng
  • Biotechnology and Bioengineering, Vol. 113, Issue 1
  • DOI: 10.1002/bit.25703

Plasmid and transposon transfer to Thiobacillus ferrooxidans.
journal, May 1994


Genetic transfer of IncP, IncQ and IncW plasmids to four Thiobacillus ferrooxidans strains by conjugation
journal, February 2001


Overexpression of Rusticyanin in Acidithiobacillus ferrooxidans ATCC19859 Increased Fe(II) Oxidation Activity
journal, July 2010


Construction and Characterization of tetH Overexpression and Knockout Strains of Acidithiobacillus ferrooxidans
journal, April 2014

  • Yu, Y.; Liu, X.; Wang, H.
  • Journal of Bacteriology, Vol. 196, Issue 12
  • DOI: 10.1128/JB.01472-13

Rusticyanin gene expression of Acidithiobacillus ferrooxidans ATCC 33020 in sulfur- and in ferrous iron media
journal, October 2003


Extending the models for iron and sulfur oxidation in the extreme Acidophile Acidithiobacillus ferrooxidans
journal, January 2009


Insights into the iron and sulfur energetic metabolism of Acidithiobacillus ferrooxidans by microarray transcriptome profiling
journal, September 2006


Microarray and bioinformatic analyses suggest models for carbon metabolism in the autotroph Acidithiobacillus ferrooxidans
journal, September 2006


Proteomic Analysis of Differential Protein Expression in Acidithiobacillus ferrooxidans Grown on Ferrous Iron or Elemental Sulfur
journal, October 2012


Differential Protein Expression during Growth of Acidithiobacillus ferrooxidans on Ferrous Iron, Sulfur Compounds, or Metal Sulfides
journal, August 2004


Addition of citrate to Acidithiobacillus ferrooxidans cultures enables precipitate-free growth at elevated pH and reduces ferric inhibition : Addition of Citrate to
journal, May 2014

  • Li, Xiaozheng; Mercado, Roel; Kernan, Timothy
  • Biotechnology and Bioengineering, Vol. 111, Issue 10
  • DOI: 10.1002/bit.25268

Characterization of the petI and res Operons of Acidithiobacillus ferrooxidans
journal, March 2002


Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
journal, January 2011

  • Sievers, Fabian; Wilm, Andreas; Dineen, David
  • Molecular Systems Biology, Vol. 7, Issue 1
  • DOI: 10.1038/msb.2011.75

Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome
journal, December 2001


BacPP: Bacterial promoter prediction—A tool for accurate sigma-factor specific assignment in enterobacteria
journal, October 2011

  • de Avila e. Silva, Scheila; Echeverrigaray, Sergio; Gerhardt, Günther J. L.
  • Journal of Theoretical Biology, Vol. 287
  • DOI: 10.1016/j.jtbi.2011.07.017

PRODORIC: prokaryotic database of gene regulation
journal, January 2003


Overproduction of phage Lambda repressor under control of the lac promotor of Escherichia coli
journal, January 1976

  • Gronenborn, Bruno
  • MGG Molecular & General Genetics, Vol. 148, Issue 3
  • DOI: 10.1007/BF00332898

Vectors bearing a hybrid trp-lac promoter useful for regulated expression of cloned genes in Escherichia coli
journal, November 1983


The tac promoter: a functional hybrid derived from the trp and lac promoters
journal, January 1983

  • de Boer, H. A.; Comstock, L. J.; Vasser, M.
  • Proceedings of the National Academy of Sciences, Vol. 80, Issue 1, p. 21-25
  • DOI: 10.1073/pnas.80.1.21

Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter.
journal, July 1995


Mechanistic Insights into Sulfur Relay by Multiple Sulfur Mediators Involved in Thiouridine Biosynthesis at tRNA Wobble Positions
journal, January 2006


Structural and Molecular Genetic Insight into a Widespread Sulfur Oxidation Pathway
journal, December 2008

  • Dahl, Christiane; Schulte, Andrea; Stockdreher, Yvonne
  • Journal of Molecular Biology, Vol. 384, Issue 5
  • DOI: 10.1016/j.jmb.2008.10.016

Anaerobic Sulfur Metabolism Coupled to Dissimilatory Iron Reduction in the Extremophile Acidithiobacillus ferrooxidans
journal, January 2013

  • Osorio, Héctor; Mangold, Stefanie; Denis, Yann
  • Applied and Environmental Microbiology, Vol. 79, Issue 7
  • DOI: 10.1128/AEM.03057-12

The “bacterial heterodisulfide” DsrC is a key protein in dissimilatory sulfur metabolism
journal, July 2014

  • Venceslau, S. S.; Stockdreher, Y.; Dahl, C.
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1837, Issue 7
  • DOI: 10.1016/j.bbabio.2014.03.007

Anatomy of Escherichia coli σ 70 promoters
journal, December 2006

  • Shultzaberger, Ryan K.; Chen, Zehua; Lewis, Karen A.
  • Nucleic Acids Research, Vol. 35, Issue 3
  • DOI: 10.1093/nar/gkl956

Construction and model-based analysis of a promoter library for E. coli: an indispensable tool for metabolic engineering
journal, January 2007

  • De Mey, Marjan; Maertens, Jo; Lequeux, Gaspard J.
  • BMC Biotechnology, Vol. 7, Issue 1
  • DOI: 10.1186/1472-6750-7-34

Sequence and expression of the rusticyanin structural gene from Thiobacillus ferrooxidans ATCC33020 strain
journal, November 1998

  • Bengrine, Abderrahmane; Guiliani, Nicolas; Appia-Ayme, Corinne
  • Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression, Vol. 1443, Issue 1-2
  • DOI: 10.1016/S0167-4781(98)00199-7