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Title: There and Back Again: Loss and Reacquisition of Two-Cys Photocycles in Cyanobacteriochromes

Abstract

Not provided.

Authors:
 [1];  [1];  [1]
  1. Department of Molecular and Cellular Biology, University of California, Davis CA
Publication Date:
Research Org.:
Univ. of California, Davis, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC)
OSTI Identifier:
1536773
DOE Contract Number:  
SC0002395
Resource Type:
Journal Article
Journal Name:
Photochemistry and Photobiology
Additional Journal Information:
Journal Volume: 93; Journal Issue: 3; Journal ID: ISSN 0031-8655
Publisher:
The American Society of Photobiology
Country of Publication:
United States
Language:
English
Subject:
Biochemistry & Molecular Biology; Biophysics

Citation Formats

Rockwell, Nathan C., Martin, Shelley S., and Lagarias, John Clark. There and Back Again: Loss and Reacquisition of Two-Cys Photocycles in Cyanobacteriochromes. United States: N. p., 2017. Web. doi:10.1111/php.12708.
Rockwell, Nathan C., Martin, Shelley S., & Lagarias, John Clark. There and Back Again: Loss and Reacquisition of Two-Cys Photocycles in Cyanobacteriochromes. United States. doi:10.1111/php.12708.
Rockwell, Nathan C., Martin, Shelley S., and Lagarias, John Clark. Mon . "There and Back Again: Loss and Reacquisition of Two-Cys Photocycles in Cyanobacteriochromes". United States. doi:10.1111/php.12708.
@article{osti_1536773,
title = {There and Back Again: Loss and Reacquisition of Two-Cys Photocycles in Cyanobacteriochromes},
author = {Rockwell, Nathan C. and Martin, Shelley S. and Lagarias, John Clark},
abstractNote = {Not provided.},
doi = {10.1111/php.12708},
journal = {Photochemistry and Photobiology},
issn = {0031-8655},
number = 3,
volume = 93,
place = {United States},
year = {2017},
month = {5}
}

Works referenced in this record:

Engineered photoreceptors as novel optogenetic tools
journal, January 2010

  • Möglich, Andreas; Moffat, Keith
  • Photochemical & Photobiological Sciences, Vol. 9, Issue 10
  • DOI: 10.1039/c0pp00167h

Phytochrome Structure and Signaling Mechanisms
journal, June 2006


Phytochrome functions in Arabidopsis development
journal, October 2009

  • Franklin, K. A.; Quail, P. H.
  • Journal of Experimental Botany, Vol. 61, Issue 1
  • DOI: 10.1093/jxb/erp304

Phytochrome signaling mechanisms and the control of plant development
journal, November 2011


Photoreceptor Signaling Networks in Plant Responses to Shade
journal, April 2013


Phytochrome Cytoplasmic Signaling
journal, April 2013


A Cyanobacterial Phytochrome Two-Component Light Sensory System
journal, September 1997


Two independent, light-sensing two-component systems in a filamentous cyanobacterium: Light sensing two component systems in
journal, May 2002


Diverse two-cysteine photocycles in phytochromes and cyanobacteriochromes
journal, June 2011

  • Rockwell, N. C.; Martin, S. S.; Feoktistova, K.
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 29
  • DOI: 10.1073/pnas.1107844108

Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light
journal, August 2014


Adaptive and acclimative responses of cyanobacteria to far-red light: Responses of cyanobacteria to far-red light
journal, August 2015


RfpA, RfpB, and RfpC are the Master Control Elements of Far-Red Light Photoacclimation (FaRLiP)
journal, November 2015


Similarity of a Chromatic Adaptation Sensor to Phytochrome and Ethylene Receptors
journal, September 1996


Responding to Color: The Regulation of Complementary Chromatic Adaptation
journal, June 2006


Cyanobacteriochrome CcaS is the green light receptor that induces the expression of phycobilisome linker protein
journal, July 2008

  • Hirose, Y.; Shimada, T.; Narikawa, R.
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue 28
  • DOI: 10.1073/pnas.0801826105

Cyanobacteriochrome CcaS regulates phycoerythrin accumulation in Nostoc punctiforme, a group II chromatic adapter
journal, April 2010

  • Hirose, Y.; Narikawa, R.; Katayama, M.
  • Proceedings of the National Academy of Sciences, Vol. 107, Issue 19
  • DOI: 10.1073/pnas.1000177107

Green/red cyanobacteriochromes regulate complementary chromatic acclimation via a protochromic photocycle
journal, March 2013

  • Hirose, Y.; Rockwell, N. C.; Nishiyama, K.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 13
  • DOI: 10.1073/pnas.1302909110

Novel Putative Photoreceptor and Regulatory Genes Required for the Positive Phototactic Movement of the Unicellular Motile Cyanobacterium Synechocystis sp. PCC 6803
journal, December 2000

  • Yoshihara, Shizue; Suzuki, Fumiko; Fujita, Hironori
  • Plant and Cell Physiology, Vol. 41, Issue 12
  • DOI: 10.1093/pcp/pce010

Light regulation of type IV pilus-dependent motility by chemosensor-like elements in Synechocystis PCC6803
journal, June 2001

  • Bhaya, D.; Takahashi, A.; Grossman, A. R.
  • Proceedings of the National Academy of Sciences, Vol. 98, Issue 13
  • DOI: 10.1073/pnas.131201098

Cyanobacterial Phytochrome-like PixJ1 Holoprotein Shows Novel Reversible Photoconversion Between Blue- and Green-absorbing Forms
journal, December 2004

  • Yoshihara, Shizue; Katayama, Mitsunori; Geng, Xiaoxing
  • Plant and Cell Physiology, Vol. 45, Issue 12
  • DOI: 10.1093/pcp/pch214

Cyanobacteriochrome SesA Is a Diguanylate Cyclase That Induces Cell Aggregation in Thermosynechococcus
journal, July 2014

  • Enomoto, Gen; Nomura, Ryouhei; Shimada, Takashi
  • Journal of Biological Chemistry, Vol. 289, Issue 36
  • DOI: 10.1074/jbc.M114.583674

Genetic Analysis Reveals the Identity of the Photoreceptor for Phototaxis in Hormogonium Filaments of Nostoc punctiforme
journal, December 2014

  • Campbell, Elsie L.; Hagen, Kari D.; Chen, Rui
  • Journal of Bacteriology, Vol. 197, Issue 4
  • DOI: 10.1128/JB.02374-14

Three cyanobacteriochromes work together to form a light color-sensitive input system for c-di-GMP signaling of cell aggregation
journal, June 2015

  • Enomoto, Gen; Narikawa, Rei
  • Proceedings of the National Academy of Sciences, Vol. 112, Issue 26
  • DOI: 10.1073/pnas.1504228112

A Brief History of Phytochromes
journal, April 2010


Defining the Bilin Lyase Domain:  Lessons from the Extended Phytochrome Superfamily
journal, November 2000

  • Wu, Shu-Hsing; Lagarias, J. Clark
  • Biochemistry, Vol. 39, Issue 44
  • DOI: 10.1021/bi001123z

Probing protein-chromophore interactions in Cph1 phytochrome by mutagenesis
journal, April 2006


A Novel Photoactive GAF Domain of Cyanobacteriochrome AnPixJ That Shows Reversible Green/Red Photoconversion
journal, July 2008

  • Narikawa, Rei; Fukushima, Yoshimasa; Ishizuka, Takami
  • Journal of Molecular Biology, Vol. 380, Issue 5
  • DOI: 10.1016/j.jmb.2008.05.035

Phytochrome three-dimensional structures and functions
journal, March 2010


Two ground state isoforms and a chromophore D-ring photoflip triggering extensive intramolecular changes in a canonical phytochrome
journal, February 2011

  • Song, C.; Psakis, G.; Lang, C.
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 10
  • DOI: 10.1073/pnas.1013377108

Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome
journal, October 2011


A Photo-Labile Thioether Linkage to Phycoviolobilin Provides the Foundation for the Blue/Green Photocycles in DXCF-Cyanobacteriochromes
journal, January 2013


Dynamic Structural Changes Underpin Photoconversion of a Blue/Green Cyanobacteriochrome between Its Dark and Photoactivated States
journal, December 2013

  • Cornilescu, Claudia C.; Cornilescu, Gabriel; Burgie, E. Sethe
  • Journal of Biological Chemistry, Vol. 289, Issue 5
  • DOI: 10.1074/jbc.M113.531053

Structures of cyanobacteriochromes from phototaxis regulators AnPixJ and TePixJ reveal general and specific photoconversion mechanism
journal, December 2012

  • Narikawa, R.; Ishizuka, T.; Muraki, N.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 3
  • DOI: 10.1073/pnas.1212098110

Red/Green Cyanobacteriochromes: Sensors of Color and Power
journal, November 2012

  • Rockwell, Nathan C.; Martin, Shelley S.; Lagarias, J. Clark
  • Biochemistry, Vol. 51, Issue 48
  • DOI: 10.1021/bi3013565

Type I reversible photochemistry of phycoerythrocyanin involves Z/E-isomerization of α-84 phycoviolobilin chromophore
journal, March 1995

  • Zhao, Kai-Hong; Haessner, Rainer; Cmiel, Edmund
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1228, Issue 2-3
  • DOI: 10.1016/0005-2728(94)00181-4

The Cyanobacteriochrome, TePixJ, Isomerizes Its Own Chromophore by Converting Phycocyanobilin to Phycoviolobilin
journal, February 2011

  • Ishizuka, Takami; Kamiya, Ayumi; Suzuki, Hiroyuki
  • Biochemistry, Vol. 50, Issue 6
  • DOI: 10.1021/bi101626t

Phycoviolobilin Formation and Spectral Tuning in the DXCF Cyanobacteriochrome Subfamily
journal, February 2012

  • Rockwell, Nathan C.; Martin, Shelley S.; Gulevich, Alexander G.
  • Biochemistry, Vol. 51, Issue 7
  • DOI: 10.1021/bi201783j

Identification of Cyanobacteriochromes Detecting Far-Red Light
journal, July 2016


A Second Conserved GAF Domain Cysteine Is Required for the Blue/Green Photoreversibility of Cyanobacteriochrome Tlr0924 from Thermosynechococcus elongatus
journal, July 2008

  • Rockwell, Nathan C.; Njuguna, Stephanie Lane; Roberts, Laurel
  • Biochemistry, Vol. 47, Issue 27
  • DOI: 10.1021/bi800088t

Conserved Phenylalanine Residues Are Required for Blue-Shifting of Cyanobacteriochrome Photoproducts
journal, May 2014

  • Rockwell, Nathan C.; Martin, Shelley S.; Gulevich, Alexander G.
  • Biochemistry, Vol. 53, Issue 19
  • DOI: 10.1021/bi500037a

NpR3784 is the prototype for a distinctive group of red/green cyanobacteriochromes using alternative Phe residues for photoproduct tuning
journal, January 2015

  • Rockwell, Nathan C.; Martin, Shelley S.; Gan, Fei
  • Photochemical & Photobiological Sciences, Vol. 14, Issue 2
  • DOI: 10.1039/C4PP00336E

Identification of DXCF cyanobacteriochrome lineages with predictable photocycles
journal, January 2015

  • Rockwell, Nathan C.; Martin, Shelley S.; Lagarias, J. Clark
  • Photochemical & Photobiological Sciences, Vol. 14, Issue 5
  • DOI: 10.1039/C4PP00486H

Second-Chance Forward Isomerization Dynamics of the Red/Green Cyanobacteriochrome NpR6012g4 from Nostoc punctiforme
journal, December 2011

  • Kim, Peter W.; Freer, Lucy H.; Rockwell, Nathan C.
  • Journal of the American Chemical Society, Vol. 134, Issue 1
  • DOI: 10.1021/ja209533x

Femtosecond Photodynamics of the Red/Green Cyanobacteriochrome NpR6012g4 from Nostoc punctiforme . 2. Reverse Dynamics
journal, January 2012

  • Kim, Peter W.; Freer, Lucy H.; Rockwell, Nathan C.
  • Biochemistry, Vol. 51, Issue 2
  • DOI: 10.1021/bi2017365

Femtosecond Photodynamics of the Red/Green Cyanobacteriochrome NpR6012g4 from Nostoc punctiforme . 1. Forward Dynamics
journal, January 2012

  • Kim, Peter W.; Freer, Lucy H.; Rockwell, Nathan C.
  • Biochemistry, Vol. 51, Issue 2
  • DOI: 10.1021/bi201507k

Reactive Ground-State Pathways Are Not Ubiquitous in Red/Green Cyanobacteriochromes
journal, April 2013

  • Chang, Che-Wei; Gottlieb, Sean M.; Kim, Peter W.
  • The Journal of Physical Chemistry B, Vol. 117, Issue 38
  • DOI: 10.1021/jp402112u

Photoconversion Mechanism of the Second GAF Domain of Cyanobacteriochrome AnPixJ and the Cofactor Structure of Its Green-Absorbing State
journal, July 2013

  • Velazquez Escobar, Francisco; Utesch, Tillmann; Narikawa, Rei
  • Biochemistry, Vol. 52, Issue 29
  • DOI: 10.1021/bi400506a

Conservation and Diversity in the Primary Forward Photodynamics of Red/Green Cyanobacteriochromes
journal, January 2015

  • Gottlieb, Sean M.; Kim, Peter W.; Chang, Che-Wei
  • Biochemistry, Vol. 54, Issue 4
  • DOI: 10.1021/bi5012755

Color Tuning in Red/Green Cyanobacteriochrome AnPixJ: Photoisomerization at C15 Causes an Excited-State Destabilization
journal, July 2015

  • Song, Chen; Narikawa, Rei; Ikeuchi, Masahiko
  • The Journal of Physical Chemistry B, Vol. 119, Issue 30
  • DOI: 10.1021/acs.jpcb.5b04655

A Red/Green Cyanobacteriochrome Sustains Its Color Despite a Change in the Bilin Chromophore’s Protonation State
journal, September 2015


Chemical Inhomogeneity in the Ultrafast Dynamics of the DXCF Cyanobacteriochrome Tlr0924
journal, July 2012

  • Freer, Lucy H.; Kim, Peter W.; Corley, Scott C.
  • The Journal of Physical Chemistry B, Vol. 116, Issue 35
  • DOI: 10.1021/jp302637u

Mechanistic Insight into the Photosensory Versatility of DXCF Cyanobacteriochromes
journal, April 2012

  • Rockwell, Nathan C.; Martin, Shelley S.; Lagarias, J. Clark
  • Biochemistry, Vol. 51, Issue 17
  • DOI: 10.1021/bi300171s

Photoconversion changes bilin chromophore conjugation and protein secondary structure in the violet/orange cyanobacteriochrome NpF2163g3
journal, January 2014

  • Lim, Sunghyuk; Rockwell, Nathan C.; Martin, Shelley S.
  • Photochem. Photobiol. Sci., Vol. 13, Issue 6
  • DOI: 10.1039/C3PP50442E

Eukaryotic algal phytochromes span the visible spectrum
journal, February 2014

  • Rockwell, Nathan C.; Duanmu, Deqiang; Martin, Shelley S.
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 10
  • DOI: 10.1073/pnas.1401871111

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
journal, September 1997

  • Altschul, Stephen F.; Madden, Thomas L.; Schäffer, Alejandro A.
  • Nucleic Acids Research, Vol. 25, Issue 17, p. 3389-3402
  • DOI: 10.1093/nar/25.17.3389

Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
journal, December 1983


Accounting for Solvent Accessibility and Secondary Structure in Protein Phylogenetics Is Clearly Beneficial
journal, March 2010


Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula
journal, May 2011

  • Jones, A. C.; Monroe, E. A.; Podell, S.
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 21
  • DOI: 10.1073/pnas.1101137108

Moorea producens gen. nov., sp. nov. and Moorea bouillonii comb. nov., tropical marine cyanobacteria rich in bioactive secondary metabolites
journal, July 2011

  • Engene, N.; Rottacker, E. C.; Kastovsky, J.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 5
  • DOI: 10.1099/ijs.0.033761-0

Biliverdin Amides Reveal Roles for Propionate Side Chains in Bilin Reductase Recognition and in Holophytochrome Assembly and Photoconversion
journal, July 2010

  • Shang, Lixia; Rockwell, Nathan C.; Martin, Shelley S.
  • Biochemistry, Vol. 49, Issue 29
  • DOI: 10.1021/bi100756x

Genetic engineering of phytochrome biosynthesis in bacteria
journal, September 2001

  • Gambetta, G. A.; Lagarias, J. C.
  • Proceedings of the National Academy of Sciences, Vol. 98, Issue 19
  • DOI: 10.1073/pnas.191375198

Cyanobacteriochrome TePixJ of Thermosynechococcus elongatus Harbors Phycoviolobilin as a Chromophore
journal, July 2007

  • Ishizuka, T.; Narikawa, R.; Kohchi, T.
  • Plant and Cell Physiology, Vol. 48, Issue 9
  • DOI: 10.1093/pcp/pcm106

Primary and Secondary Photodynamics of the Violet/Orange Dual-Cysteine NpF2164g3 Cyanobacteriochrome Domain from Nostoc punctiforme
journal, February 2014

  • Gottlieb, Sean M.; Kim, Peter W.; Corley, Scott C.
  • Biochemistry, Vol. 53, Issue 6
  • DOI: 10.1021/bi4015538