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Title: Microdiversity shapes the traits, niche space, and biogeography of microbial taxa: The ecological function of microdiversity


Not provided.

 [1];  [2]
  1. Department of Earth System Science, University of California, Irvine CA 92697 USA
  2. Department of Earth System Science, University of California, Irvine CA 92697 USA; Department of Ecology and Evolutionary Biology, University of California, Irvine CA 92697 USA
Publication Date:
Research Org.:
Univ. of California, Irvine, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC)
OSTI Identifier:
DOE Contract Number:  
Resource Type:
Journal Article
Journal Name:
Environmental Microbiology Reports
Additional Journal Information:
Journal Volume: 9; Journal Issue: 2; Journal ID: ISSN 1758-2229
Country of Publication:
United States
Environmental Sciences & Ecology; Microbiology

Citation Formats

Larkin, Alyse A., and Martiny, Adam C. Microdiversity shapes the traits, niche space, and biogeography of microbial taxa: The ecological function of microdiversity. United States: N. p., 2017. Web. doi:10.1111/1758-2229.12523.
Larkin, Alyse A., & Martiny, Adam C. Microdiversity shapes the traits, niche space, and biogeography of microbial taxa: The ecological function of microdiversity. United States. doi:10.1111/1758-2229.12523.
Larkin, Alyse A., and Martiny, Adam C. Mon . "Microdiversity shapes the traits, niche space, and biogeography of microbial taxa: The ecological function of microdiversity". United States. doi:10.1111/1758-2229.12523.
title = {Microdiversity shapes the traits, niche space, and biogeography of microbial taxa: The ecological function of microdiversity},
author = {Larkin, Alyse A. and Martiny, Adam C.},
abstractNote = {Not provided.},
doi = {10.1111/1758-2229.12523},
journal = {Environmental Microbiology Reports},
issn = {1758-2229},
number = 2,
volume = 9,
place = {United States},
year = {2017},
month = {3}

Works referenced in this record:

Divergence and Redundancy of 16S rRNA Sequences in Genomes with Multiple rrn Operons
journal, April 2004

Community Assembly, Niche Conservatism, and Adaptive Evolution in Changing Environments
journal, May 2003

  • Ackerly, David D.
  • International Journal of Plant Sciences, Vol. 164, Issue S3
  • DOI: 10.1086/368401

Resistance, resilience, and redundancy in microbial communities
journal, August 2008

  • Allison, S. D.; Martiny, J. B. H.
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue Supplement 1
  • DOI: 10.1073/pnas.0801925105

Patterns of Diversity in Marine Phytoplankton
journal, February 2010

The Infinitely Many Genes Model for the Distributed Genome of Bacteria
journal, January 2012

  • Baumdicker, Franz; Hess, Wolfgang R.; Pfaffelhuber, Peter
  • Genome Biology and Evolution, Vol. 4, Issue 4
  • DOI: 10.1093/gbe/evs016

The record of horizontal gene transfer in Salmonella
journal, August 1997

Fine-Scale Distribution Patterns of Synechococcus Ecological Diversity in Microbial Mats of Mushroom Spring, Yellowstone National Park
journal, September 2011

  • Becraft, Eric D.; Cohan, Frederick M.; Kühl, Michael
  • Applied and Environmental Microbiology, Vol. 77, Issue 21
  • DOI: 10.1128/AEM.05927-11

Rapid evolution in response to high-temperature selection
journal, July 1990

  • Bennett, Albert F.; Dao, Khoi M.; Lenski, Richard E.
  • Nature, Vol. 346, Issue 6279
  • DOI: 10.1038/346079a0

Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses
journal, October 2007

  • Bhaya, Devaki; Grossman, Arthur R.; Steunou, Anne-Soisig
  • The ISME Journal, Vol. 1, Issue 8
  • DOI: 10.1038/ismej.2007.46

Prochlorococcus: the structure and function of collective diversity
journal, December 2014

  • Biller, Steven J.; Berube, Paul M.; Lindell, Debbie
  • Nature Reviews Microbiology, Vol. 13, Issue 1
  • DOI: 10.1038/nrmicro3378

Marine bacterial microdiversity as revealed by internal transcribed spacer analysis
journal, January 2005

Global biogeography of SAR11 marine bacteria
journal, January 2012

  • Brown, Mark V.; Lauro, Federico M.; DeMaere, Matthew Z.
  • Molecular Systems Biology, Vol. 8, Issue 1
  • DOI: 10.1038/msb.2012.28

RETRACTED ARTICLE: Ecological Significance of Microdiversity: Coexistence Among Casing Soil Bacterial Strains Through Allocation of Nutritional Resource
journal, January 2011

  • Choudhary, Devendra Kumar; Johri, Bhavdish N.
  • Indian Journal of Microbiology, Vol. 51, Issue 1
  • DOI: 10.1007/s12088-011-0068-7

Bacterial Species and Speciation
journal, August 2001

Tracking bacterial responses to global warming with an ecotype-based systematics
journal, January 2009

A Systematics for Discovering the Fundamental Units of Bacterial Diversity
journal, May 2007

The Origins of Ecological Diversity in Prokaryotes
journal, November 2008

Genomic Islands and the Ecology and Evolution of Prochlorococcus
journal, March 2006

Hutchinson's duality: The once and future niche
journal, September 2009

  • Colwell, R. K.; Rangel, T. F.
  • Proceedings of the National Academy of Sciences, Vol. 106, Issue Supplement_2
  • DOI: 10.1073/pnas.0901650106

Genomic islands in pathogenic and environmental microorganisms
journal, May 2004

  • Dobrindt, Ulrich; Hochhut, Bianca; Hentschel, Ute
  • Nature Reviews Microbiology, Vol. 2, Issue 5
  • DOI: 10.1038/nrmicro884

Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species
journal, October 2010

Recombination in Escherichia coli and the definition of biological species.
journal, November 1991

A single genus in the gut microbiome reflects host preference and specificity
journal, June 2014

  • Eren, A. Murat; Sogin, Mitchell L.; Morrison, Hilary G.
  • The ISME Journal, Vol. 9, Issue 1
  • DOI: 10.1038/ismej.2014.97

Phycoerythrin evolution and diversification of spectral phenotype in marine Synechococcus and related picocyanobacteria
journal, September 2012

Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria
journal, June 2016

  • Farrant, Gregory K.; Doré, Hugo; Cornejo-Castillo, Francisco M.
  • Proceedings of the National Academy of Sciences, Vol. 113, Issue 24
  • DOI: 10.1073/pnas.1524865113

Potential for phosphite and phosphonate utilization by Prochlorococcus
journal, October 2011

The diversity and biogeography of soil bacterial communities
journal, January 2006

  • Fierer, N.; Jackson, R. B.
  • Proceedings of the National Academy of Sciences, Vol. 103, Issue 3
  • DOI: 10.1073/pnas.0507535103

Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus
journal, May 2013

  • Flombaum, P.; Gallegos, J. L.; Gordillo, R. A.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 24
  • DOI: 10.1073/pnas.1307701110

The Evolution of Host Specialization in the Vertebrate Gut Symbiont Lactobacillus reuteri
journal, February 2011

Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea
journal, February 2006

  • Frigaard, Niels-Ulrik; Martinez, Asuncion; Mincer, Tracy J.
  • Nature, Vol. 439, Issue 7078
  • DOI: 10.1038/nature04435

Microbial microdiversity
journal, June 1998

  • Fuhrman, Jed A.; Campbell, Lisa
  • Nature, Vol. 393, Issue 6684
  • DOI: 10.1038/30839

A latitudinal diversity gradient in planktonic marine bacteria
journal, May 2008

  • Fuhrman, J. A.; Steele, J. A.; Hewson, I.
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue 22
  • DOI: 10.1073/pnas.0803070105

Survival strategies of infectious biofilms
journal, January 2005

Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine Archaea of Group I
journal, July 2000

Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage
journal, August 2014

  • Ghylin, Trevor W.; Garcia, Sarahi L.; Moya, Francisco
  • The ISME Journal, Vol. 8, Issue 12
  • DOI: 10.1038/ismej.2014.135

Genetic diversity in Sargasso Sea bacterioplankton
journal, May 1990

  • Giovannoni, Stephen J.; Britschgi, Theresa B.; Moyer, Craig L.
  • Nature, Vol. 345, Issue 6270
  • DOI: 10.1038/345060a0

Prokaryotic Evolution in Light of Gene Transfer
journal, December 2002

Predictive habitat distribution models in ecology
journal, December 2000

Expanded Genetic Codes Create New Mutational Routes to Rifampicin Resistance in Escherichia coli
journal, May 2016

  • Hammerling, Michael J.; Gollihar, Jimmy; Mortensen, Catherine
  • Molecular Biology and Evolution, Vol. 33, Issue 8
  • DOI: 10.1093/molbev/msw094

Biogeographic patterns in ocean microbes emerge in a neutral agent-based model
journal, September 2014

Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton
journal, May 2008

Concluding Remarks
journal, January 1957

Phytoplankton niches estimated from field data
journal, May 2012

  • Irwin, Andrew J.; Nelles, Andrew M.; Finkel, Zoe V.
  • Limnology and Oceanography, Vol. 57, Issue 3
  • DOI: 10.4319/lo.2012.57.3.0787

Responses of plant populations and communities to environmental changes of the late Quaternary
journal, December 2000

Mapping and sequencing of mutations in the Escherichia colirpoB gene that lead to rifampicin resistance
journal, July 1988

Evidence for structuring of bacterial community composition by organic carbon source in temperate lakes
journal, September 2009

Global biogeography of Prochlorococcus genome diversity in the surface ocean
journal, February 2016

  • Kent, Alyssa G.; Dupont, Chris L.; Yooseph, Shibu
  • The ISME Journal, Vol. 10, Issue 8
  • DOI: 10.1038/ismej.2015.265

Local dispersal promotes biodiversity in a real-life game of rock–paper–scissors
journal, July 2002

  • Kerr, Benjamin; Riley, Margaret A.; Feldman, Marcus W.
  • Nature, Vol. 418, Issue 6894
  • DOI: 10.1038/nature00823

Patterns and Implications of Gene Gain and Loss in the Evolution of Prochlorococcus
journal, January 2007

Evolutionary Rate at the Molecular Level
journal, February 1968

The Genetic Basis of Thermal Reaction Norm Evolution in Lab and Natural Phage Populations
journal, June 2006

Speedy speciation in a bacterial microcosm: new species can arise as frequently as adaptations within a species
journal, January 2013

  • Koeppel, Alexander F.; Wertheim, Joel O.; Barone, Laura
  • The ISME Journal, Vol. 7, Issue 6
  • DOI: 10.1038/ismej.2013.3

Horizontal Gene Transfer in Prokaryotes: Quantification and Classification
journal, October 2001

Genomic Heterogeneity and Ecological Speciation within One Subspecies of Bacillus subtilis
journal, June 2014

  • Kopac, Sarah; Wang, Zhang; Wiedenbeck, Jane
  • Applied and Environmental Microbiology, Vol. 80, Issue 16
  • DOI: 10.1128/AEM.00576-14

Selection-Driven Gene Loss in Bacteria
journal, June 2012

The Extinction Dynamics of Bacterial Pseudogenes
journal, August 2010

Niche partitioning and biogeography of high light adapted Prochlorococcus across taxonomic ranks in the North Pacific
journal, January 2016

  • Larkin, Alyse A.; Blinebry, Sara K.; Howes, Caroline
  • The ISME Journal, Vol. 10, Issue 7
  • DOI: 10.1038/ismej.2015.244

Biodiversity and Climate Change: Integrating Evolutionary and Ecological Responses of Species and Communities
journal, December 2010

Molecular archaeology of the Escherichia coli genome
journal, August 1998

  • Lawrence, Jeffrey G.; Ochman, Howard
  • Proceedings of the National Academy of Sciences, Vol. 95, Issue 16
  • DOI: 10.1073/pnas.95.16.9413

Impact of ocean phytoplankton diversity on phosphate uptake
journal, November 2014

  • Lomas, Michael W.; Bonachela, Juan A.; Levin, Simon A.
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 49
  • DOI: 10.1073/pnas.1420760111

Phosphate acquisition genes in Prochlorococcus ecotypes: Evidence for genome-wide adaptation
journal, August 2006

  • Martiny, A. C.; Coleman, M. L.; Chisholm, S. W.
  • Proceedings of the National Academy of Sciences, Vol. 103, Issue 33
  • DOI: 10.1073/pnas.0601301103

Microbial biogeography: putting microorganisms on the map
journal, February 2006

  • Martiny, Jennifer B. Hughes; Bohannan, Brendan J. M.; Brown, James H.
  • Nature Reviews Microbiology, Vol. 4, Issue 2
  • DOI: 10.1038/nrmicro1341

Occurrence of phosphate acquisition genes in Prochlorococcus cells from different ocean regions
journal, June 2009

Drivers of bacterial  -diversity depend on spatial scale
journal, April 2011

  • Martiny, J. B. H.; Eisen, J. A.; Penn, K.
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 19
  • DOI: 10.1073/pnas.1016308108

Phylogenetic conservatism of functional traits in microorganisms
journal, December 2012

  • Martiny, Adam C.; Treseder, Kathleen; Pusch, Gordon
  • The ISME Journal, Vol. 7, Issue 4
  • DOI: 10.1038/ismej.2012.160

Microbiomes in light of traits: A phylogenetic perspective
journal, November 2015

Rebuilding community ecology from functional traits
journal, April 2006

Photophysiology of the marine cyanobacterium Prochlorococcus: Ecotypic differences among cultured isolates
journal, May 1999

Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes
journal, June 1998

  • Moore, Lisa R.; Rocap, Gabrielle; Chisholm, Sallie W.
  • Nature, Vol. 393, Issue 6684
  • DOI: 10.1038/30965

Utilization of different nitrogen sources by the marine cyanobacteria Prochlorococcus and Synechococcus
journal, July 2002

  • Moore, Lisa R.; Post, Anton F.; Rocap, Gabrielle
  • Limnology and Oceanography, Vol. 47, Issue 4
  • DOI: 10.4319/lo.2002.47.4.0989

Ecotypic variation in phosphorus-acquisition mechanisms within marine picocyanobacteria
journal, January 2005

  • Moore, Lr; Ostrowski, M.; Scanlan, Dj
  • Aquatic Microbial Ecology, Vol. 39
  • DOI: 10.3354/ame039257

Black Queen evolution: the role of leakiness in structuring microbial communities
journal, August 2015

The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss
journal, March 2012

  • Morris, J. Jeffrey; Lenski, Richard E.; Zinser, Erik R.
  • mBio, Vol. 3, Issue 2
  • DOI: 10.1128/mBio.00036-12

Coexistence of Evolving Bacteria Stabilized by a Shared Black Queen Function: Experimental Evolution of a Black Queen Community
journal, August 2014

  • Morris, J. Jeffrey; Papoulis, Spiridon E.; Lenski, Richard E.
  • Evolution, Vol. 68, Issue 10
  • DOI: 10.1111/evo.12485

Facilitation of Robust Growth of Prochlorococcus Colonies and Dilute Liquid Cultures by "Helper" Heterotrophic Bacteria
journal, May 2008

  • Morris, J. J.; Kirkegaard, R.; Szul, M. J.
  • Applied and Environmental Microbiology, Vol. 74, Issue 14
  • DOI: 10.1128/AEM.02479-07

Dependence of the Cyanobacterium Prochlorococcus on Hydrogen Peroxide Scavenging Microbes for Growth at the Ocean's Surface
journal, February 2011

Pyrosequencing-Based Comparative Genome Analysis of Vibrio vulnificus Environmental Isolates
journal, May 2012

Phylogenetic Ecology of the Freshwater Actinobacteria acI Lineage
journal, September 2007

  • Newton, R. J.; Jones, S. E.; Helmus, M. R.
  • Applied and Environmental Microbiology, Vol. 73, Issue 22
  • DOI: 10.1128/AEM.00794-07

The Extent of Genome Flux and Its Role in the Differentiation of Bacterial Lineages
journal, June 2014

  • Nowell, Reuben W.; Green, Sarah; Laue, Bridget E.
  • Genome Biology and Evolution, Vol. 6, Issue 6
  • DOI: 10.1093/gbe/evu123

The interplay between microevolution and community structure in microbial populations
journal, August 2013

  • O’Brien, Siobhán; Hodgson, David J.; Buckling, Angus
  • Current Opinion in Biotechnology, Vol. 24, Issue 4
  • DOI: 10.1016/j.copbio.2013.02.022

Genomic Diversity of Escherichia Isolates from Diverse Habitats
journal, October 2012

Regulation of genetic flux between bacteria by restriction–modification systems
journal, May 2016

  • Oliveira, Pedro H.; Touchon, Marie; Rocha, Eduardo P. C.
  • Proceedings of the National Academy of Sciences, Vol. 113, Issue 20
  • DOI: 10.1073/pnas.1603257113

The spontaneous mutation frequencies of Prochlorococcus strains are commensurate with those of other bacteria: Mutation frequencies in Prochlorococcus
journal, September 2011

Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment
journal, August 2006

  • Palenik, B.; Ren, Q.; Dupont, C. L.
  • Proceedings of the National Academy of Sciences, Vol. 103, Issue 36
  • DOI: 10.1073/pnas.0602963103

Niche dynamics in space and time
journal, March 2008

  • Pearman, Peter B.; Guisan, Antoine; Broennimann, Olivier
  • Trends in Ecology & Evolution, Vol. 23, Issue 3
  • DOI: 10.1016/j.tree.2007.11.005

Ecological niche conservatism: a time-structured review of evidence: Ecological niche conservatism
journal, March 2011

Mesophilic cyanobacteria producing thermophilic restriction endonucleases
journal, May 2001

Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology
journal, September 2016

  • Pinhassi, Jarone; DeLong, Edward F.; Béjà, Oded
  • Microbiology and Molecular Biology Reviews, Vol. 80, Issue 4
  • DOI: 10.1128/MMBR.00003-16

Connecting thermal physiology and latitudinal niche partitioning in marine Synechococcus
journal, January 2014

  • Pittera, Justine; Humily, Florian; Thorel, Maxine
  • The ISME Journal, Vol. 8, Issue 6
  • DOI: 10.1038/ismej.2013.228

Global patterns of diversity and community structure in marine bacterioplankton: MARINE BACTERIA DIVERSITY and DISTRIBUTION
journal, December 2006

Quantitative and qualitative microscale distribution of bacteria in soil
journal, October 2001

Genetic architecture of thermal adaptation in Escherichia coli
journal, January 2001

  • Riehle, M. M.; Bennett, A. F.; Long, A. D.
  • Proceedings of the National Academy of Sciences, Vol. 98, Issue 2
  • DOI: 10.1073/pnas.98.2.525

Iron stress genes in marine Synechococcus and the development of a flow cytometric iron stress assay
journal, February 2009

Evolution of Escherichia coli rifampicin resistance in an antibiotic-free environment during thermal stress
journal, January 2013

  • Rodríguez-Verdugo, Alejandra; Gaut, Brandon S.; Tenaillon, Olivier
  • BMC Evolutionary Biology, Vol. 13, Issue 1, Article No. 50
  • DOI: 10.1186/1471-2148-13-50

Global biogeography of Streptomyces antibiotic inhibition, resistance, and resource use
journal, March 2014

Ecology and evolution of bacterial microdiversity: Table 1
journal, December 2000

DNA Mismatch Repair: Molecular Mechanisms and Biological Function
journal, October 2003

The presence of the glycolysis operon in SAR11 genomes is positively correlated with ocean productivity
journal, February 2010

Population Genomics of Early Events in the Ecological Differentiation of Bacteria
journal, April 2012

  • Shapiro, B. Jesse; Friedman, Jonathan; Cordero, Otto X.
  • Science, Vol. 336, Issue 6077
  • DOI: 10.1126/science.1218198

Microbial rhodopsins: functional versatility and genetic mobility
journal, November 2006

  • Sharma, Adrian K.; Spudich, John L.; Doolittle, W. Ford
  • Trends in Microbiology, Vol. 14, Issue 11
  • DOI: 10.1016/j.tim.2006.09.006

Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study
journal, January 2007

Gene flow and the geographic structure of natural populations
journal, May 1987

Microbial diversity in the deep sea and the underexplored "rare biosphere"
journal, July 2006

  • Sogin, M. L.; Morrison, H. G.; Huber, J. A.
  • Proceedings of the National Academy of Sciences, Vol. 103, Issue 32
  • DOI: 10.1073/pnas.0605127103

Stochastic and deterministic assembly processes in subsurface microbial communities
journal, March 2012

  • Stegen, James C.; Lin, Xueju; Konopka, Allan E.
  • The ISME Journal, Vol. 6, Issue 9
  • DOI: 10.1038/ismej.2012.22

Detection of rifampicin-resistance mutations in Mycobacterium tuberculosis
journal, March 1993

The Molecular Diversity of Adaptive Convergence
journal, January 2012

  • Tenaillon, O.; Rodriguez-Verdugo, A.; Gaut, R. L.
  • Science, Vol. 335, Issue 6067, p. 457-461
  • DOI: 10.1126/science.1212986

Tempo and mode of genome evolution in a 50,000-generation experiment
journal, August 2016

  • Tenaillon, Olivier; Barrick, Jeffrey E.; Ribeck, Noah
  • Nature, Vol. 536, Issue 7615
  • DOI: 10.1038/nature18959

Genotypic Diversity Within a Natural Coastal Bacterioplankton Population
journal, February 2005

Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype
journal, January 2014

  • Cameron Thrash, J.; Temperton, Ben; Swan, Brandon K.
  • The ISME Journal, Vol. 8, Issue 7
  • DOI: 10.1038/ismej.2013.243

Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability
journal, January 2006

  • Tolonen, Andrew C.; Aach, John; Lindell, Debbie
  • Molecular Systems Biology, Vol. 2, Issue 1
  • DOI: 10.1038/msb4100087

Conceptual Synthesis in Community Ecology
journal, June 2010

  • Vellend, Mark
  • The Quarterly Review of Biology, Vol. 85, Issue 2
  • DOI: 10.1086/652373

Environmental Genome Shotgun Sequencing of the Sargasso Sea
journal, April 2004

Rates of Lateral Gene Transfer in Prokaryotes: High but Why?
journal, October 2015

  • Vos, Michiel; Hesselman, Matthijn C.; te Beek, Tim A.
  • Trends in Microbiology, Vol. 23, Issue 10
  • DOI: 10.1016/j.tim.2015.07.006

Mutation, recombination, and incipient speciation of bacteria in the laboratory
journal, June 1999

  • Vulic, M.; Lenski, R. E.; Radman, M.
  • Proceedings of the National Academy of Sciences, Vol. 96, Issue 13
  • DOI: 10.1073/pnas.96.13.7348

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes
journal, February 2013

Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli
journal, December 2002

  • Welch, R. A.; Burland, V.; Plunkett, G.
  • Proceedings of the National Academy of Sciences, Vol. 99, Issue 26, p. 17020-17024
  • DOI: 10.1073/pnas.252529799

Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches
journal, September 2011

Increased metabolic potential of Rhizobium spp. is associated with bacterial competitiveness
journal, August 2007

  • Wielbo, Jerzy; Marek-Kozaczuk, Monika; Kubik-Komar, Agnieszka
  • Canadian Journal of Microbiology, Vol. 53, Issue 8
  • DOI: 10.1139/W07-053

Transcriptome Sequencing Reveals the Virulence and Environmental Genetic Programs of Vibrio vulnificus Exposed to Host and Estuarine Conditions
journal, December 2014

Evolution of Symbiotic Bacteria in the Distal Human Intestine
journal, June 2007

Thermally adaptive tradeoffs in closely related marine bacterial strains: Thermal adaptation in closely related bacteria
journal, January 2015

  • Yung, Cheuk-Man; Vereen, Marissa K.; Herbert, Amy
  • Environmental Microbiology, Vol. 17, Issue 7
  • DOI: 10.1111/1462-2920.12714

Multi-omics analysis of niche specificity provides new insights into ecological adaptation in bacteria
journal, February 2016

Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes
journal, January 2013

  • Zimmerman, Amy E.; Martiny, Adam C.; Allison, Steven D.
  • The ISME Journal, Vol. 7, Issue 6
  • DOI: 10.1038/ismej.2012.176

Influence of light and temperature on Prochlorococcus ecotype distributions in the Atlantic Ocean
journal, September 2007

  • Zinser, Erik R.; Johnson, Zackary I.; Coe, Allison
  • Limnology and Oceanography, Vol. 52, Issue 5
  • DOI: 10.4319/lo.2007.52.5.2205

Choreography of the Transcriptome, Photophysiology, and Cell Cycle of a Minimal Photoautotroph, Prochlorococcus
journal, April 2009