Self-assembly of precisely defined DNA nanotube superstructures using DNA origami seeds

doi:10.1039/c6nr06983e

Title: Self-assembly of precisely defined DNA nanotube superstructures using DNA origami seeds

Abstract

Not provided.

Authors:: Mohammed, A. M.; Velazquez, L.; Chisenhall, A.; Schiffels, D.; Fygenson, D. K.; Schulman, R.

Publication Date:: 2017-01-01

Research Org.:: Univ. of California, Riverside, CA (United States)

Sponsoring Org.:: USDOE Office of Science (SC)

OSTI Identifier:: 1535147

DOE Contract Number:: SC0010595

Resource Type:: Journal Article

Journal Name:: Nanoscale

Additional Journal Information:: Journal Volume: 9; Journal Issue: 2; Journal ID: ISSN 2040-3364

Publisher:: Royal Society of Chemistry

Country of Publication:: United States

Language:: English

Subject:: Chemistry; Science & Technology - Other Topics; Materials Science; Physics

Citation Formats


                    Mohammed, A. M., Velazquez, L., Chisenhall, A., Schiffels, D., Fygenson, D. K., and Schulman, R. Self-assembly of precisely defined DNA nanotube superstructures using DNA origami seeds.  United States: N. p., 2017. 
        Web.  doi:10.1039/c6nr06983e.

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                    Mohammed, A. M., Velazquez, L., Chisenhall, A., Schiffels, D., Fygenson, D. K., & Schulman, R. Self-assembly of precisely defined DNA nanotube superstructures using DNA origami seeds.  United States.  doi:10.1039/c6nr06983e.

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                    Mohammed, A. M., Velazquez, L., Chisenhall, A., Schiffels, D., Fygenson, D. K., and Schulman, R. Sun .  
        "Self-assembly of precisely defined DNA nanotube superstructures using DNA origami seeds".  United States.  doi:10.1039/c6nr06983e.

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@article{osti_1535147,

  title        = {Self-assembly of precisely defined DNA nanotube superstructures using DNA origami seeds},

  author       = {Mohammed, A. M. and Velazquez, L. and Chisenhall, A. and Schiffels, D. and Fygenson, D. K. and Schulman, R.},

  abstractNote = {Not provided.},

  doi          = {10.1039/c6nr06983e},

  journal      = {Nanoscale},

  issn         = {2040-3364},

  number       = 2,

  volume       = 9,

  place        = {United States},

  year         = {2017},

  month        = {1}

}

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Journal Article:

DOI: 10.1039/c6nr06983e

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Works referenced in this record:

Large-Scale Hierarchical Organization of Nanowire Arrays for Integrated Nanosystems
journal, September 2003

Whang, Dongmok; Jin, Song; Wu, Yue
Nano Letters, Vol. 3, Issue 9, p. 1255-1259
DOI: 10.1021/nl0345062

Self-assembly of carbon nanotubes into two-dimensional geometries using DNA origami templates
journal, November 2009

Maune, Hareem T.; Han, Si-ping; Barish, Robert D.
Nature Nanotechnology, Vol. 5, Issue 1
DOI: 10.1038/nnano.2009.311

DNA-mediated self-assembly of carbon nanotube-based electronic devices
journal, June 2004

Hazani, Miron; Hennrich, Frank; Kappes, Manfred
Chemical Physics Letters, Vol. 391, Issue 4-6
DOI: 10.1016/j.cplett.2004.05.042

Emerging role of primary cilia as mechanosensors in osteocytes
journal, June 2013

Nguyen, An M.; Jacobs, Christopher R.
Bone, Vol. 54, Issue 2
DOI: 10.1016/j.bone.2012.11.016

The Mitotic Spindle: A Self-Made Machine
journal, October 2001

Karsenti, E.
Science, Vol. 294, Issue 5542
DOI: 10.1126/science.1063488

Mechanisms and Molecules of the Mitotic Spindle
journal, September 2004

Gadde, Sharat; Heald, Rebecca
Current Biology, Vol. 14, Issue 18
DOI: 10.1016/j.cub.2004.09.021

Design and Characterization of Programmable DNA Nanotubes
journal, December 2004

Rothemund, Paul W. K.; Ekani-Nkodo, Axel; Papadakis, Nick
Journal of the American Chemical Society, Vol. 126, Issue 50
DOI: 10.1021/ja044319l

Modular construction of DNA nanotubes of tunable geometry and single- or double-stranded character
journal, April 2009

Aldaye, Faisal A.; Lo, Pik Kwan; Karam, Pierre
Nature Nanotechnology, Vol. 4, Issue 6
DOI: 10.1038/nnano.2009.72

Self-Assembly of Chiral DNA Nanotubes
journal, December 2004

Mitchell, James C.; Harris, J. Robin; Malo, Jonathan
Journal of the American Chemical Society, Vol. 126, Issue 50
DOI: 10.1021/ja043890h

Programming DNA Tube Circumferences
journal, August 2008

Yin, P.; Hariadi, R. F.; Sahu, S.
Science, Vol. 321, Issue 5890
DOI: 10.1126/science.1157312

Self-assembly of DNA nanotubes with controllable diameters
journal, September 2011

Wilner, Ofer I.; Orbach, Ron; Henning, Anja
Nature Communications, Vol. 2, Issue 1
DOI: 10.1038/ncomms1535

Peptide-Based Nanotubes and Their Applications in Bionanotechnology
journal, September 2005

Gao, X.; Matsui, H.
Advanced Materials, Vol. 17, Issue 17, p. 2037-2050
DOI: 10.1002/adma.200401849

Au Nanowire Fabrication from Sequenced Histidine-Rich Peptide
journal, November 2002

Djalali, Ramin; Chen, Yung-fou; Matsui, Hiroshi
Journal of the American Chemical Society, Vol. 124, Issue 46
DOI: 10.1021/ja028261r

Peptide-Polymer Hybrid Nanotubes
journal, May 2005

Couet, Julien; Samuel, J. D. Jeyaprakash S.; Kopyshev, Alexey
Angewandte Chemie International Edition, Vol. 44, Issue 21, p. 3297-3301
DOI: 10.1002/anie.200462993

Challenges and opportunities for structural DNA nanotechnology
journal, November 2011

Pinheiro, Andre V.; Han, Dongran; Shih, William M.
Nature Nanotechnology, Vol. 6, Issue 12
DOI: 10.1038/nnano.2011.187

The interaction of Arp2/3 complex with actin: Nucleation, high affinity pointed end capping, and formation of branching networks of filaments
journal, May 1998

Mullins, R. D.; Heuser, J. A.; Pollard, T. D.
Proceedings of the National Academy of Sciences, Vol. 95, Issue 11
DOI: 10.1073/pnas.95.11.6181

New insights into the regulation and cellular functions of the ARP2/3 complex
journal, December 2012

Rotty, Jeremy D.; Wu, Congying; Bear, James E.
Nature Reviews Molecular Cell Biology, Vol. 14, Issue 1
DOI: 10.1038/nrm3492

Building the Centriole
journal, September 2010

Azimzadeh, Juliette; Marshall, Wallace F.
Current Biology, Vol. 20, Issue 18
DOI: 10.1016/j.cub.2010.08.010

Actin, a Central Player in Cell Shape and Movement
journal, November 2009

Pollard, Thomas D.; Cooper, John A.
Science, Vol. 326, Issue 5957
DOI: 10.1126/science.1175862

Microtubule nucleation by γ-tubulin complexes
journal, October 2011

Kollman, Justin M.; Merdes, Andreas; Mourey, Lionel
Nature Reviews Molecular Cell Biology, Vol. 12, Issue 11
DOI: 10.1038/nrm3209

Directing Self-Assembly of DNA Nanotubes Using Programmable Seeds
journal, August 2013

Mohammed, Abdul M.; Schulman, Rebecca
Nano Letters, Vol. 13, Issue 9
DOI: 10.1021/nl400881w

Robust self-replication of combinatorial information via crystal growth and scission
journal, April 2012

Schulman, R.; Yurke, B.; Winfree, E.
Proceedings of the National Academy of Sciences, Vol. 109, Issue 17
DOI: 10.1073/pnas.1117813109

Single-molecule dissection of stacking forces in DNA
journal, September 2016

Kilchherr, F.; Wachauf, C.; Pelz, B.
Science, Vol. 353, Issue 6304
DOI: 10.1126/science.aaf5508

The importance of using the optimal plasticware and glassware in studies involving peptides
journal, July 2011

Goebel-Stengel, Miriam; Stengel, Andreas; Taché, Yvette
Analytical Biochemistry, Vol. 414, Issue 1
DOI: 10.1016/j.ab.2011.02.009

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Title: Self-assembly of precisely defined DNA nanotube superstructures using DNA origami seeds

Abstract

Citation Formats

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