Functional diversity for biomass deconstruction in family 5 subfamily 5 (GH5_5) of fungal endo-β1,4-glucanases

doi:10.1007/s00253-017-8168-x

Title: Functional diversity for biomass deconstruction in family 5 subfamily 5 (GH5_5) of fungal endo-β1,4-glucanases

Abstract

Not provided.

Authors:: Li, Bingyao; Walton, Jonathan D.

Publication Date:: 2017-02-14

Research Org.:: Univ. of Wisconsin, Madison, WI (United States)

Sponsoring Org.:: USDOE Office of Science (SC)

OSTI Identifier:: 1533278

DOE Contract Number:: FC02-07ER64494

Resource Type:: Journal Article

Journal Name:: Applied Microbiology and Biotechnology

Additional Journal Information:: Journal Volume: 101; Journal Issue: 10; Journal ID: ISSN 0175-7598

Publisher:: Springer

Country of Publication:: United States

Language:: English

Subject:: Biotechnology & Applied Microbiology

Citation Formats


                    Li, Bingyao, and Walton, Jonathan D. Functional diversity for biomass deconstruction in family 5 subfamily 5 (GH5_5) of fungal endo-β1,4-glucanases.  United States: N. p., 2017. 
        Web.  doi:10.1007/s00253-017-8168-x.

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                    Li, Bingyao, & Walton, Jonathan D. Functional diversity for biomass deconstruction in family 5 subfamily 5 (GH5_5) of fungal endo-β1,4-glucanases.  United States.  doi:10.1007/s00253-017-8168-x.

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                    Li, Bingyao, and Walton, Jonathan D. Tue .  
        "Functional diversity for biomass deconstruction in family 5 subfamily 5 (GH5_5) of fungal endo-β1,4-glucanases".  United States.  doi:10.1007/s00253-017-8168-x.

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@article{osti_1533278,

  title        = {Functional diversity for biomass deconstruction in family 5 subfamily 5 (GH5_5) of fungal endo-β1,4-glucanases},

  author       = {Li, Bingyao and Walton, Jonathan D.},

  abstractNote = {Not provided.},

  doi          = {10.1007/s00253-017-8168-x},

  journal      = {Applied Microbiology and Biotechnology},

  issn         = {0175-7598},

  number       = 10,

  volume       = 101,

  place        = {United States},

  year         = {2017},

  month        = {2}

}

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DOI: 10.1007/s00253-017-8168-x

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Works referenced in this record:

Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)
journal, January 2012

Aspeborg, Henrik; Coutinho, Pedro M.; Wang, Yang
BMC Evolutionary Biology, Vol. 12, Issue 1
DOI: 10.1186/1471-2148-12-186

Improving Enzymes for Biomass Conversion: A Basic Research Perspective
journal, January 2010

Banerjee, Goutami; Scott-Craig, John S.; Walton, Jonathan D.
BioEnergy Research, Vol. 3, Issue 1
DOI: 10.1007/s12155-009-9067-5

Synthetic enzyme mixtures for biomass deconstruction: Production and optimization of a core set
journal, March 2010

Banerjee, Goutami; Car, Suzana; Scott-Craig, John S.
Biotechnology and Bioengineering, Vol. 106, Issue 5
DOI: 10.1002/bit.22741

Synthetic multi-component enzyme mixtures for deconstruction of lignocellulosic biomass
journal, December 2010

Banerjee, Goutami; Car, Suzana; Scott-Craig, John S.
Bioresource Technology, Vol. 101, Issue 23, p. 9097-9105
DOI: 10.1016/j.biortech.2010.07.028

Rapid optimization of enzyme mixtures for deconstruction of diverse pretreatment/biomass feedstock combinations
journal, January 2010

Banerjee, Goutami; Car, Suzana; Scott-Craig, John S.
Biotechnology for Biofuels, Vol. 3, Issue 1
DOI: 10.1186/1754-6834-3-22

Alkaline peroxide pretreatment of corn stover: effects of biomass, peroxide, and enzyme loading and composition on yields of glucose and xylose
journal, January 2011

Banerjee, Goutami; Car, Suzana; Scott-Craig, John S.
Biotechnology for Biofuels, Vol. 4, Issue 1
DOI: 10.1186/1754-6834-4-16

Inhibition of cellulase, xylanase and β-glucosidase activities by softwood lignin preparations
journal, September 2006

Berlin, Alex; Balakshin, Mikhail; Gilkes, Neil
Journal of Biotechnology, Vol. 125, Issue 2, p. 198-209
DOI: 10.1016/j.jbiotec.2006.02.021

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence
journal, June 2004

Blom, Nikolaj; Sicheritz-Pontén, Thomas; Gupta, Ramneek
PROTEOMICS, Vol. 4, Issue 6
DOI: 10.1002/pmic.200300771

Endoglucanase I from the edible straw mushroom, Volvariella volvacea . : Purification, characterization, cloning and expression
journal, November 2001

Ding, Shao-jun; Ge, Wei; Buswell, John A.
European Journal of Biochemistry, Vol. 268, Issue 22
DOI: 10.1046/j.0014-2956.2001.02503.x

Secretion, purification and characterisation of a recombinant Volvariella volvacea endoglucanase expressed in the yeast Pichia pastoris
journal, October 2002

Ding, Shao-jun; Ge, Wei; Buswell, John A.
Enzyme and Microbial Technology, Vol. 31, Issue 5
DOI: 10.1016/S0141-0229(02)00168-0

DiANNA 1.1: an extension of the DiANNA web server for ternary cysteine classification
journal, July 2006

Ferre, F.; Clote, P.
Nucleic Acids Research, Vol. 34, Issue Web Server
DOI: 10.1093/nar/gkl189

The development of a heterologous transformation system for the cellulolytic fungus Trichoderma reesei based on a pyrG-negative mutant strain
journal, July 1990

Gruber, F.; Visser, J.; Kubicek, C. P.
Current Genetics, Vol. 18, Issue 1
DOI: 10.1007/BF00321118

Constitution of konjac glucomannan: chemical analysis and 13C NMR spectroscopy
journal, August 2003

Katsuraya, Kaname; Okuyama, Kohsaku; Hatanaka, Kenichi
Carbohydrate Polymers, Vol. 53, Issue 2
DOI: 10.1016/S0144-8617(03)00039-0

The challenge of enzyme cost in the production of lignocellulosic biofuels
journal, November 2011

Klein-Marcuschamer, Daniel; Oleskowicz-Popiel, Piotr; Simmons, Blake A.
Biotechnology and Bioengineering, Vol. 109, Issue 4
DOI: 10.1002/bit.24370

Strong cellulase inhibition by Mannan polysaccharides in cellulose conversion to sugars: Strong Cellulase Inhibition by Heteromannans
journal, May 2014

Kumar, Rajeev; Wyman, Charles E.
Biotechnology and Bioengineering, Vol. 111, Issue 7
DOI: 10.1002/bit.25218

A structural study of Hypocrea jecorina Cel5A
journal, September 2011

Lee, Toni M.; Farrow, Mary F.; Arnold, Frances H.
Protein Science, Vol. 20, Issue 11
DOI: 10.1002/pro.730

Use of Dinitrosalicylic Acid Reagent for Determination of Reducing Sugar
journal, March 1959

Miller, G. L.
Analytical Chemistry, Vol. 31, Issue 3
DOI: 10.1021/ac60147a030

Codon usage tabulated from international DNA sequence databases: status for the year 2000
journal, January 2000

Nakamura, Yasukazu; Gojobori, Takashi; Ikemura, Toshimichi
Nucleic Acids Research, Vol. 28, Issue 1, p. 292-292
DOI: 10.1093/nar/28.1.292

Adsorption of Trichoderma reesei CBH I and EG II and their catalytic domains on steam pretreated softwood and isolated lignin
journal, January 2004

Palonen, Hetti; Tjerneld, Folke; Zacchi, Guido
Journal of Biotechnology, Vol. 107, Issue 1
DOI: 10.1016/j.jbiotec.2003.09.011

Inhibition of enzymatic hydrolysis by residual lignins from softwood-study of enzyme binding and inactivation on lignin-rich surface
journal, June 2011

Rahikainen, Jenni; Mikander, Saara; Marjamaa, Kaisa
Biotechnology and Bioengineering, Vol. 108, Issue 12
DOI: 10.1002/bit.23242

Cellulase–lignin interactions—The role of carbohydrate-binding module and pH in non-productive binding
journal, October 2013

Rahikainen, Jenni Liisa; Evans, James David; Mikander, Saara
Enzyme and Microbial Technology, Vol. 53, Issue 5
DOI: 10.1016/j.enzmictec.2013.07.003

EGIII, a new endoglucanase from Trichoderma reesei: the characterization of both gene and enzyme
journal, March 1988

Saloheimo, M.; Lehtovaara, P.; Penttilä, M.
Gene, Vol. 63, Issue 1, p. 11-21
DOI: 10.1016/0378-1119(88)90541-0

Xyr1 (Xylanase Regulator 1) Regulates both the Hydrolytic Enzyme System and d-Xylose Metabolism in Hypocrea jecorina
journal, October 2006

Stricker, Astrid R.; Grosstessner-Hain, Karin; Würleitner, Elisabeth
Eukaryotic Cell, Vol. 5, Issue 12
DOI: 10.1128/EC.00211-06

Cloning, Sequencing, and Expression of a Thermostable Cellulase Gene of Humicola grisea
journal, January 1997

Takashima, Shou; Nakamura, Akira; Masaki, Haruhiko
Bioscience, Biotechnology, and Biochemistry, Vol. 61, Issue 2
DOI: 10.1271/bbb.61.245

Recombinant expression, activity screening and functional characterization identifies three novel endo-1,4-β-glucanases that efficiently hydrolyse cellulosic substrates
journal, June 2011

Tambor, José Humberto; Ren, Huanan; Ushinsky, Sophia
Applied Microbiology and Biotechnology, Vol. 93, Issue 1
DOI: 10.1007/s00253-011-3419-8

A homologous production system for Trichoderma reesei secreted proteins in a cellulase-free background
journal, November 2011

Uzbas, Fatma; Sezerman, Ugur; Hartl, Lukas
Applied Microbiology and Biotechnology, Vol. 93, Issue 4
DOI: 10.1007/s00253-011-3674-8

Microplate-based filter paper assay to measure total cellulase activity
journal, January 2004

Xiao, Zhizhuang; Storms, Reginald; Tsang, Adrian
Biotechnology and Bioengineering, Vol. 88, Issue 7
DOI: 10.1002/bit.20286

Competitive inhibition of cellobiohydrolase I by manno-oligosaccharides
journal, January 2015

Xin, Donglin; Ge, Xiaoyan; Sun, Zongping
Enzyme and Microbial Technology, Vol. 68
DOI: 10.1016/j.enzmictec.2014.09.009

Enhancement of Synthetic Trichoderma-Based Enzyme Mixtures for Biomass Conversion with an Alternative Family 5 Glycosyl Hydrolase from Sporotrichum thermophile
journal, October 2014

Ye, Zhuoliang; Zheng, Yun; Li, Bingyao
PLoS ONE, Vol. 9, Issue 10
DOI: 10.1371/journal.pone.0109885

Processivity and Enzymatic Mode of a Glycoside Hydrolase Family 5 Endoglucanase from Volvariella volvacea
journal, November 2012

Zheng, Fei; Ding, Shaojun
Applied and Environmental Microbiology, Vol. 79, Issue 3
DOI: 10.1128/AEM.02725-12

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Similar Records

Title: Functional diversity for biomass deconstruction in family 5 subfamily 5 (GH5_5) of fungal endo-β1,4-glucanases

Abstract

Citation Formats

Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5) journal, January 2012

Improving Enzymes for Biomass Conversion: A Basic Research Perspective journal, January 2010

Synthetic enzyme mixtures for biomass deconstruction: Production and optimization of a core set journal, March 2010

Synthetic multi-component enzyme mixtures for deconstruction of lignocellulosic biomass journal, December 2010

Rapid optimization of enzyme mixtures for deconstruction of diverse pretreatment/biomass feedstock combinations journal, January 2010

Alkaline peroxide pretreatment of corn stover: effects of biomass, peroxide, and enzyme loading and composition on yields of glucose and xylose journal, January 2011

Inhibition of cellulase, xylanase and β-glucosidase activities by softwood lignin preparations journal, September 2006

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence journal, June 2004

Endoglucanase I from the edible straw mushroom, Volvariella volvacea . : Purification, characterization, cloning and expression journal, November 2001

Secretion, purification and characterisation of a recombinant Volvariella volvacea endoglucanase expressed in the yeast Pichia pastoris journal, October 2002

DiANNA 1.1: an extension of the DiANNA web server for ternary cysteine classification journal, July 2006

The development of a heterologous transformation system for the cellulolytic fungus Trichoderma reesei based on a pyrG-negative mutant strain journal, July 1990

Constitution of konjac glucomannan: chemical analysis and 13C NMR spectroscopy journal, August 2003

The challenge of enzyme cost in the production of lignocellulosic biofuels journal, November 2011

Strong cellulase inhibition by Mannan polysaccharides in cellulose conversion to sugars: Strong Cellulase Inhibition by Heteromannans journal, May 2014

A structural study of Hypocrea jecorina Cel5A journal, September 2011

Use of Dinitrosalicylic Acid Reagent for Determination of Reducing Sugar journal, March 1959

Codon usage tabulated from international DNA sequence databases: status for the year 2000 journal, January 2000

Adsorption of Trichoderma reesei CBH I and EG II and their catalytic domains on steam pretreated softwood and isolated lignin journal, January 2004

Inhibition of enzymatic hydrolysis by residual lignins from softwood-study of enzyme binding and inactivation on lignin-rich surface journal, June 2011

Cellulase–lignin interactions—The role of carbohydrate-binding module and pH in non-productive binding journal, October 2013

EGIII, a new endoglucanase from Trichoderma reesei: the characterization of both gene and enzyme journal, March 1988

Xyr1 (Xylanase Regulator 1) Regulates both the Hydrolytic Enzyme System and d-Xylose Metabolism in Hypocrea jecorina journal, October 2006

Cloning, Sequencing, and Expression of a Thermostable Cellulase Gene of Humicola grisea journal, January 1997

Recombinant expression, activity screening and functional characterization identifies three novel endo-1,4-β-glucanases that efficiently hydrolyse cellulosic substrates journal, June 2011

A homologous production system for Trichoderma reesei secreted proteins in a cellulase-free background journal, November 2011

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Competitive inhibition of cellobiohydrolase I by manno-oligosaccharides journal, January 2015

Enhancement of Synthetic Trichoderma-Based Enzyme Mixtures for Biomass Conversion with an Alternative Family 5 Glycosyl Hydrolase from Sporotrichum thermophile journal, October 2014

Processivity and Enzymatic Mode of a Glycoside Hydrolase Family 5 Endoglucanase from Volvariella volvacea journal, November 2012

Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)
journal, January 2012

Improving Enzymes for Biomass Conversion: A Basic Research Perspective
journal, January 2010

Synthetic enzyme mixtures for biomass deconstruction: Production and optimization of a core set
journal, March 2010

Synthetic multi-component enzyme mixtures for deconstruction of lignocellulosic biomass
journal, December 2010

Rapid optimization of enzyme mixtures for deconstruction of diverse pretreatment/biomass feedstock combinations
journal, January 2010

Alkaline peroxide pretreatment of corn stover: effects of biomass, peroxide, and enzyme loading and composition on yields of glucose and xylose
journal, January 2011

Inhibition of cellulase, xylanase and β-glucosidase activities by softwood lignin preparations
journal, September 2006

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence
journal, June 2004

Endoglucanase I from the edible straw mushroom, Volvariella volvacea . : Purification, characterization, cloning and expression
journal, November 2001

Secretion, purification and characterisation of a recombinant Volvariella volvacea endoglucanase expressed in the yeast Pichia pastoris
journal, October 2002

DiANNA 1.1: an extension of the DiANNA web server for ternary cysteine classification
journal, July 2006

The development of a heterologous transformation system for the cellulolytic fungus Trichoderma reesei based on a pyrG-negative mutant strain
journal, July 1990

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journal, August 2003

The challenge of enzyme cost in the production of lignocellulosic biofuels
journal, November 2011

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journal, September 2011

Use of Dinitrosalicylic Acid Reagent for Determination of Reducing Sugar
journal, March 1959

Codon usage tabulated from international DNA sequence databases: status for the year 2000
journal, January 2000

Adsorption of Trichoderma reesei CBH I and EG II and their catalytic domains on steam pretreated softwood and isolated lignin
journal, January 2004

Inhibition of enzymatic hydrolysis by residual lignins from softwood-study of enzyme binding and inactivation on lignin-rich surface
journal, June 2011

Cellulase–lignin interactions—The role of carbohydrate-binding module and pH in non-productive binding
journal, October 2013

EGIII, a new endoglucanase from Trichoderma reesei: the characterization of both gene and enzyme
journal, March 1988

Xyr1 (Xylanase Regulator 1) Regulates both the Hydrolytic Enzyme System and d-Xylose Metabolism in Hypocrea jecorina
journal, October 2006

Cloning, Sequencing, and Expression of a Thermostable Cellulase Gene of Humicola grisea
journal, January 1997

Recombinant expression, activity screening and functional characterization identifies three novel endo-1,4-β-glucanases that efficiently hydrolyse cellulosic substrates
journal, June 2011

A homologous production system for Trichoderma reesei secreted proteins in a cellulase-free background
journal, November 2011

Microplate-based filter paper assay to measure total cellulase activity
journal, January 2004

Competitive inhibition of cellobiohydrolase I by manno-oligosaccharides
journal, January 2015

Enhancement of Synthetic Trichoderma-Based Enzyme Mixtures for Biomass Conversion with an Alternative Family 5 Glycosyl Hydrolase from Sporotrichum thermophile
journal, October 2014

Processivity and Enzymatic Mode of a Glycoside Hydrolase Family 5 Endoglucanase from Volvariella volvacea
journal, November 2012