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Title: Minimum Information about an Uncultivated Virus Genome (MIUViG)

Abstract

We present an extension of the Minimum Information about any (x) Sequence (MIxS) standard for reporting sequences of uncultivated virus genomes. Minimum Information about an Uncultivated Virus Genome (MIUViG) standards were developed within the Genomic Standards Consortium framework and include virus origin, genome quality, genome annotation, taxonomic classification, biogeographic distribution and in silico host prediction. Community-wide adoption of MIUViG standards, which complement the Minimum Information about a Single Amplified Genome (MISAG) and Metagenome-Assembled Genome (MIMAG) standards for uncultivated bacteria and archaea, will improve the reporting of uncultivated virus genomes in public databases. In turn, this should enable more robust comparative studies and a systematic exploration of the global virosphere.

Authors:
ORCiD logo [1]; ORCiD logo [2]; ORCiD logo [3];  [4];  [5]; ORCiD logo [6];  [7];  [8];  [4]; ORCiD logo [9];  [10];  [11]; ORCiD logo [12]; ORCiD logo [13];  [14];  [10];  [15]; ; ; more »; ; ORCiD logo; ; ORCiD logo; ; ORCiD logo [1]; ; ;  [1]; ; ; ; ORCiD logo [1]; ORCiD logo; ; ORCiD logo; ; ORCiD logo; ORCiD logo [14]; ; ORCiD logo; ; ; ORCiD logo; ; ORCiD logo; ORCiD logo [1]; ; ORCiD logo; ORCiD logo; ORCiD logo; ; ORCiD logo [1]; ORCiD logo [15]; ORCiD logo; ; ;  [4]; ;  [1];  [1] « less
  1. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  2. Univ. of Liverpool (United Kingdom)
  3. Utrecht Univ., Utrecht (The Netherlands); Radboud Univ., Nijmegen (Netherlands)
  4. National Inst. of Health (NIH), Bethesda, MD (United States)
  5. Univ. of Guelph, ON (Canada)
  6. Inst. Pasteur, Paris (France). Unité Biologie Moléculaire du Gène chez les Extrêmophiles
  7. National Inst. of Health, Frederick, MD (United States). Fort Detrick
  8. Katholieke Univ. Leuven, Heverlee (Belgium)
  9. Arizona State Univ., Tempe, AZ (United States); Univ. of Cape Town (South Africa)
  10. European Molecular Biology Lab. (EMBL), Hinxton (United Kingdom)
  11. Cairo Univ., Cairo (Egypt)
  12. Vanderbilt Univ., Nashville, TN (United States)
  13. European Molecular Biology Lab. (EMBL), Heidelberg (Germany)
  14. Univ. of South Florida, Tampa, FL (United States)
  15. Colorado State Univ., Fort Collins, CO (United States)
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23); National Institutes of Health (NIH); Gordon and Better Moore Foundation (GBMF); Australian Research Council (ARC); National Science Foundation (NSF); Ministry of Education, Culture, Science, Sports, and Technology (MEXT) of Japan
OSTI Identifier:
1510762
DOE Contract Number:  
AC02-05CH11231; HHSN272200700016I; ANR-13-JSV6-0004
Resource Type:
Journal Article
Journal Name:
Nature Biotechnology
Additional Journal Information:
Journal Volume: 37; Journal Issue: 1; Journal ID: ISSN 1087-0156
Publisher:
Springer Nature
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Roux, Simon, Adriaenssens, Evelien M., Dutilh, Bas E., Koonin, Eugene V., Kropinski, Andrew M., Krupovic, Mart, Kuhn, Jens H., Lavigne, Rob, Brister, J. Rodney, Varsani, Arvind, Amid, Clara, Aziz, Ramy K., Bordenstein, Seth R., Bork, Peer, Breitbart, Mya, Cochrane, Guy R., Daly, Rebecca A., Desnues, Christelle, Duhaime, Melissa B., Emerson, Joanne B., Enault, François, Fuhrman, Jed A., Hingamp, Pascal, Hugenholtz, Philip, Hurwitz, Bonnie L., Ivanova, Natalia N., Labonté, Jessica M., Lee, Kyung-Bum, Malmstrom, Rex R., Martinez-Garcia, Manuel, Mizrachi, Ilene Karsch, Ogata, Hiroyuki, Páez-Espino, David, Petit, Marie-Agnès, Putonti, Catherine, Rattei, Thomas, Reyes, Alejandro, Rodriguez-Valera, Francisco, Rosario, Karyna, Schriml, Lynn, Schulz, Frederik, Steward, Grieg F., Sullivan, Matthew B., Sunagawa, Shinichi, Suttle, Curtis A., Temperton, Ben, Tringe, Susannah G., Thurber, Rebecca Vega, Webster, Nicole S., Whiteson, Katrine L., Wilhelm, Steven W., Wommack, K. Eric, Woyke, Tanja, Wrighton, Kelly C., Yilmaz, Pelin, Yoshida, Takashi, Young, Mark J., Yutin, Natalya, Allen, Lisa Zeigler, Kyrpides, Nikos C., and Eloe-Fadrosh, Emiley A. Minimum Information about an Uncultivated Virus Genome (MIUViG). United States: N. p., 2018. Web. doi:10.1038/nbt.4306.
Roux, Simon, Adriaenssens, Evelien M., Dutilh, Bas E., Koonin, Eugene V., Kropinski, Andrew M., Krupovic, Mart, Kuhn, Jens H., Lavigne, Rob, Brister, J. Rodney, Varsani, Arvind, Amid, Clara, Aziz, Ramy K., Bordenstein, Seth R., Bork, Peer, Breitbart, Mya, Cochrane, Guy R., Daly, Rebecca A., Desnues, Christelle, Duhaime, Melissa B., Emerson, Joanne B., Enault, François, Fuhrman, Jed A., Hingamp, Pascal, Hugenholtz, Philip, Hurwitz, Bonnie L., Ivanova, Natalia N., Labonté, Jessica M., Lee, Kyung-Bum, Malmstrom, Rex R., Martinez-Garcia, Manuel, Mizrachi, Ilene Karsch, Ogata, Hiroyuki, Páez-Espino, David, Petit, Marie-Agnès, Putonti, Catherine, Rattei, Thomas, Reyes, Alejandro, Rodriguez-Valera, Francisco, Rosario, Karyna, Schriml, Lynn, Schulz, Frederik, Steward, Grieg F., Sullivan, Matthew B., Sunagawa, Shinichi, Suttle, Curtis A., Temperton, Ben, Tringe, Susannah G., Thurber, Rebecca Vega, Webster, Nicole S., Whiteson, Katrine L., Wilhelm, Steven W., Wommack, K. Eric, Woyke, Tanja, Wrighton, Kelly C., Yilmaz, Pelin, Yoshida, Takashi, Young, Mark J., Yutin, Natalya, Allen, Lisa Zeigler, Kyrpides, Nikos C., & Eloe-Fadrosh, Emiley A. Minimum Information about an Uncultivated Virus Genome (MIUViG). United States. doi:10.1038/nbt.4306.
Roux, Simon, Adriaenssens, Evelien M., Dutilh, Bas E., Koonin, Eugene V., Kropinski, Andrew M., Krupovic, Mart, Kuhn, Jens H., Lavigne, Rob, Brister, J. Rodney, Varsani, Arvind, Amid, Clara, Aziz, Ramy K., Bordenstein, Seth R., Bork, Peer, Breitbart, Mya, Cochrane, Guy R., Daly, Rebecca A., Desnues, Christelle, Duhaime, Melissa B., Emerson, Joanne B., Enault, François, Fuhrman, Jed A., Hingamp, Pascal, Hugenholtz, Philip, Hurwitz, Bonnie L., Ivanova, Natalia N., Labonté, Jessica M., Lee, Kyung-Bum, Malmstrom, Rex R., Martinez-Garcia, Manuel, Mizrachi, Ilene Karsch, Ogata, Hiroyuki, Páez-Espino, David, Petit, Marie-Agnès, Putonti, Catherine, Rattei, Thomas, Reyes, Alejandro, Rodriguez-Valera, Francisco, Rosario, Karyna, Schriml, Lynn, Schulz, Frederik, Steward, Grieg F., Sullivan, Matthew B., Sunagawa, Shinichi, Suttle, Curtis A., Temperton, Ben, Tringe, Susannah G., Thurber, Rebecca Vega, Webster, Nicole S., Whiteson, Katrine L., Wilhelm, Steven W., Wommack, K. Eric, Woyke, Tanja, Wrighton, Kelly C., Yilmaz, Pelin, Yoshida, Takashi, Young, Mark J., Yutin, Natalya, Allen, Lisa Zeigler, Kyrpides, Nikos C., and Eloe-Fadrosh, Emiley A. Mon . "Minimum Information about an Uncultivated Virus Genome (MIUViG)". United States. doi:10.1038/nbt.4306. https://www.osti.gov/servlets/purl/1510762.
@article{osti_1510762,
title = {Minimum Information about an Uncultivated Virus Genome (MIUViG)},
author = {Roux, Simon and Adriaenssens, Evelien M. and Dutilh, Bas E. and Koonin, Eugene V. and Kropinski, Andrew M. and Krupovic, Mart and Kuhn, Jens H. and Lavigne, Rob and Brister, J. Rodney and Varsani, Arvind and Amid, Clara and Aziz, Ramy K. and Bordenstein, Seth R. and Bork, Peer and Breitbart, Mya and Cochrane, Guy R. and Daly, Rebecca A. and Desnues, Christelle and Duhaime, Melissa B. and Emerson, Joanne B. and Enault, François and Fuhrman, Jed A. and Hingamp, Pascal and Hugenholtz, Philip and Hurwitz, Bonnie L. and Ivanova, Natalia N. and Labonté, Jessica M. and Lee, Kyung-Bum and Malmstrom, Rex R. and Martinez-Garcia, Manuel and Mizrachi, Ilene Karsch and Ogata, Hiroyuki and Páez-Espino, David and Petit, Marie-Agnès and Putonti, Catherine and Rattei, Thomas and Reyes, Alejandro and Rodriguez-Valera, Francisco and Rosario, Karyna and Schriml, Lynn and Schulz, Frederik and Steward, Grieg F. and Sullivan, Matthew B. and Sunagawa, Shinichi and Suttle, Curtis A. and Temperton, Ben and Tringe, Susannah G. and Thurber, Rebecca Vega and Webster, Nicole S. and Whiteson, Katrine L. and Wilhelm, Steven W. and Wommack, K. Eric and Woyke, Tanja and Wrighton, Kelly C. and Yilmaz, Pelin and Yoshida, Takashi and Young, Mark J. and Yutin, Natalya and Allen, Lisa Zeigler and Kyrpides, Nikos C. and Eloe-Fadrosh, Emiley A.},
abstractNote = {We present an extension of the Minimum Information about any (x) Sequence (MIxS) standard for reporting sequences of uncultivated virus genomes. Minimum Information about an Uncultivated Virus Genome (MIUViG) standards were developed within the Genomic Standards Consortium framework and include virus origin, genome quality, genome annotation, taxonomic classification, biogeographic distribution and in silico host prediction. Community-wide adoption of MIUViG standards, which complement the Minimum Information about a Single Amplified Genome (MISAG) and Metagenome-Assembled Genome (MIMAG) standards for uncultivated bacteria and archaea, will improve the reporting of uncultivated virus genomes in public databases. In turn, this should enable more robust comparative studies and a systematic exploration of the global virosphere.},
doi = {10.1038/nbt.4306},
journal = {Nature Biotechnology},
issn = {1087-0156},
number = 1,
volume = 37,
place = {United States},
year = {2018},
month = {12}
}

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    Works referencing / citing this record:

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