skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Spatially tracking carbon through the root-rhizosphere-soil system using laser ablation-IRMS

Journal Article · · Journal of Plant Nutrition and Soil Science (Online)

The intimate relationships between plant roots, rhizosphere, and soil are fostered by the release of organic compounds from the plant into soil through various forms of rhizodeposition and the simultaneous harvestingof inorganic nutrients from the soil to the plant. Here we present a method to spatially track and map the migration of plant-derived carbon (C) through roots into the rhizosphere and surrounding soil using laser ablation-isotope ratio mass spectrometry (LA-IRMS). Weused switchgrass microcosms containing soil from field plots at the Kellogg Biological Station (Hickory Corners, Michigan, USA), which have been cropped with switchgrass since 2008. We used a 13CO2 tracerto isotopically label switchgrass plants for two diel cycles and tracked subsequent movement of labeled C using the spatially specific (<100 µm resolution) δ13C analysis enabled by LA-IRMS.This approach permitted assessment of variable C flow through different roots and enabled mapping of spatial variability of C allocation to the rhizosphere. Highly 13C-enriched C (consistent with production during the 13CO2 application period) extended ~0.5 – 1 mm from the root into the soil, suggesting that the majority of recent plant-derived C was within this distance of the root after 48 hours. Tracking the physical extent of root exudation into the rhizosphere can help evaluate the localization of plant-microbe interactions in highly variable subsurface environments,and the use of the isotopic label can differentiate freshly fixed C (presumably from root exudates) from other types of subsurface C (e.g., plant necromass and microbial turnover). The LA-IRMS technique mayalso serve as a valuable screening technique to identify areas of high activity for additional microbial or geochemicalassays.

Research Organization:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Sponsoring Organization:
USDOE
Grant/Contract Number:
AC05-76RL01830
OSTI ID:
1567258
Alternate ID(s):
OSTI ID: 1499134; OSTI ID: 1503718
Report Number(s):
PNNL-SA-135618
Journal Information:
Journal of Plant Nutrition and Soil Science (Online), Vol. 182, Issue 3; ISSN 1522-2624
Publisher:
WileyCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 8 works
Citation information provided by
Web of Science

References (40)

Stable carbon isotope analyses of nanogram quantities of particulate organic carbon (pollen) with laser ablation nano combustion gas chromatography/isotope ratio mass spectrometry journal November 2016
Going back to the roots: the microbial ecology of the rhizosphere journal September 2013
Laser Ablation Molecular Isotopic Spectrometry journal February 2011
Stage-dependent border cell and carbon flow from roots to rhizosphere journal April 2008
Plant and mycorrhizal regulation of rhizodeposition journal September 2004
Soil Resources, Microbial Activity, and Primary Production Across an Agricultural Ecosystem journal February 1997
Linking 3D Soil Structure and Plant-Microbe-Soil Carbon Transfer in the Rhizosphere journal February 2018
Spatially-Resolved Proteomics: Rapid Quantitative Analysis of Laser Capture Microdissected Alveolar Tissue Samples journal December 2016
Photoassimilate allocation and dynamics of hotspots in roots visualized by 14C phosphor imaging journal February 2011
Carbon flow in the rhizosphere: carbon trading at the soil–root interface journal February 2009
Determination of rhizosphere13C pulse signals in soil thin sections by laser ablation isotope ratio mass spectrometry journal January 2002
Micromapping of microbial hotspots and biofilms from different crops using digital image mosaics of soil thin sections journal October 2016
Switchgrass as a biofuels feedstock in the USA journal December 2006
Carbon input by plants into the soil. Review journal August 2000
In Situ Mapping of Nutrient Uptake in the Rhizosphere Using Nanoscale Secondary Ion Mass Spectrometry journal October 2009
Allocation, stress tolerance and carbon transport in plants: how does phloem physiology affect plant ecology?: Phloem ecophysiology journal September 2015
Rhizosphere processes are quantitatively important components of terrestrial carbon and nutrient cycles journal January 2015
High-resolution elemental mapping of the root-rhizosphere-soil continuum using laser-induced breakdown spectroscopy (LIBS) journal April 2019
Hotspots of soil N2O emission enhanced through water absorption by plant residue journal June 2017
Spatial distribution of root exudates of five plant species as assessed by14C labeling journal June 2006
Laser ablation molecular isotopic spectrometry (LAMIS): current state of the art journal January 2016
Laser ablation isotope ratio mass spectrometry for enhanced sensitivity and spatial resolution in stable isotope analysis: LA-IRMS for enhanced sensitivity in stable isotope analysis journal April 2011
Carbon Isotope Separation and Molecular Formation in Laser-Induced Plasmas by Laser Ablation Molecular Isotopic Spectrometry journal February 2013
Rhizosphere: biophysics, biogeochemistry and ecological relevance journal January 2009
Lipidomics in situ: Insights into plant lipid metabolism from high resolution spatial maps of metabolites journal April 2014
Rhizosphere geometry and heterogeneity arising from root-mediated physical and chemical processes: Research review journal August 2005
Spatially tracking 13 C-labelled substrate (bicarbonate) accumulation in microbial communities using laser ablation isotope ratio mass spectrometry : Spatial tracking of substrate into microbial mat journal October 2014
Laser ablation-combustion-GC-IRMS--a new method for online analysis of intra-annual variation of  13C in tree rings journal November 2004
Inter-annual carbon isotope analysis of tree-rings by laser ablation journal September 2017
Exploring the transfer of recent plant photosynthates to soil microbes: mycorrhizal pathway vs direct root exudation journal November 2014
Are root exudates more important than other sources of rhizodeposits in structuring rhizosphere bacterial communities?: Root exudates and rhizosphere bacteria journal March 2010
Intra-annual variability of wood formation and δ13C in tree-rings at Hyytiälä, Finland journal August 2016
Influence of mechanical impedance on root exudation of maize seedlings at two development stages journal January 1995
Plant-microbe-soil interactions in the rhizosphere: an evolutionary perspective journal June 2009
Microbial hotspots and hot moments in soil: Concept & review journal April 2015
The control of carbon acquisition by roots: REVIEW Control of carbon acquisition by roots journal July 2000
Root hairs increase rhizosphere extension and carbon input to soil journal December 2017
Rhizosphere interactions between microorganisms and plants govern iron and phosphorus acquisition along the root axis – model and research methods journal May 2011
Spatially resolved in vivo plant metabolomics by laser ablation-based mass spectrometry imaging (MSI) techniques: LDI-MSI and LAESI journal July 2015
Spatial heterogeneity in the relocation of added 13C within the structure of an upland grassland soil journal February 2006