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Title: Toward unrestricted use of public genomic data

Abstract

All public funding agencies and foundations that support the generation of new data have a data release policy. Some policies require the immediate public release of the produced data, so that everyone will benefit equally from their availability, while other agencies have policies that allow data to be kept private until their initial publication so that the investigator(s) collecting the data have precedence. To address the issues of sharing genomic data, particularly the sharing of pre-publication data, biomedical scientists agreed upon and created a public declaration in 2003, which came to be known as the Fort Lauderdale Agreement (1). This declaration supports the free and unrestricted use of genome sequencing data by the scientific community before those data are used for publication. It proposed that the scientist leading the generation of new data should “make the data generated by the resource immediately and freely available without restriction”. The agreement encouraged users of publicly released data to “appropriately cite the source of the data analysed and acknowledge the resource producers”. Moreover, it recommended that the users of the data should “recognize that the resource producers have a legitimate interest in publishing prominent peer-reviewed reports describing and analyzing the resource that theymore » have produced”. The above recommendations led to the wide adoption of general standards, whereby the scientists that lead the generation of new data retain the “rights” to first publication even after the data become publicly available.« less

Authors:
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Publication Date:
Research Org.:
Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1501820
Report Number(s):
PNNL-SA-140849
Journal ID: ISSN 0036-8075
DOE Contract Number:  
AC05-76RL01830
Resource Type:
Journal Article
Journal Name:
Science
Additional Journal Information:
Journal Volume: 363; Journal Issue: 6425; Journal ID: ISSN 0036-8075
Publisher:
AAAS
Country of Publication:
United States
Language:
English

Citation Formats

Amann, Rudolf I., Baichoo, Shakuntala, Blencowe, Benjamin J., Bork, Peer, Borodovsky, Mark, Brooksbank, Cath, Chain, Patrick S. G., Colwell, Rita R., Daffonchio, Daniele G., Danchin, Antoine, de Lorenzo, Victor, Dorrestein, Pieter C., Finn, Robert D., Fraser, Claire M., Gilbert, Jack A., Hallam, Steven J., Hugenholtz, Philip, Ioannidis, John P. A., Jansson, Janet K., Kim, Jihyun F., Klenk, Hans-Peter, Klotz, Martin G., Knight, Rob, Konstantinidis, Konstantinos T., Kyrpides, Nikos C., Mason, Christopher E., McHardy, Alice C., Meyer, Folker, Ouzounis, Christos A., Patrinos, Aristides A. N., Podar, Mircea, Pollard, Katherine S., Ravel, Jacques, Muñoz, Alejandro Reyes, Roberts, Richard J., Rosselló-Móra, Ramon, Sansone, Susanna-Assunta, Schloss, Patrick D., Schriml, Lynn M., Setubal, João C., Sorek, Rotem, Stevens, Rick L., Tiedje, James M., Turjanski, Adrian, Tyson, Gene W., Ussery, David W., Weinstock, George M., White, Owen, Whitman, William B., and Xenarios, Ioannis. Toward unrestricted use of public genomic data. United States: N. p., 2019. Web. doi:10.1126/science.aaw1280.
Amann, Rudolf I., Baichoo, Shakuntala, Blencowe, Benjamin J., Bork, Peer, Borodovsky, Mark, Brooksbank, Cath, Chain, Patrick S. G., Colwell, Rita R., Daffonchio, Daniele G., Danchin, Antoine, de Lorenzo, Victor, Dorrestein, Pieter C., Finn, Robert D., Fraser, Claire M., Gilbert, Jack A., Hallam, Steven J., Hugenholtz, Philip, Ioannidis, John P. A., Jansson, Janet K., Kim, Jihyun F., Klenk, Hans-Peter, Klotz, Martin G., Knight, Rob, Konstantinidis, Konstantinos T., Kyrpides, Nikos C., Mason, Christopher E., McHardy, Alice C., Meyer, Folker, Ouzounis, Christos A., Patrinos, Aristides A. N., Podar, Mircea, Pollard, Katherine S., Ravel, Jacques, Muñoz, Alejandro Reyes, Roberts, Richard J., Rosselló-Móra, Ramon, Sansone, Susanna-Assunta, Schloss, Patrick D., Schriml, Lynn M., Setubal, João C., Sorek, Rotem, Stevens, Rick L., Tiedje, James M., Turjanski, Adrian, Tyson, Gene W., Ussery, David W., Weinstock, George M., White, Owen, Whitman, William B., & Xenarios, Ioannis. Toward unrestricted use of public genomic data. United States. doi:10.1126/science.aaw1280.
Amann, Rudolf I., Baichoo, Shakuntala, Blencowe, Benjamin J., Bork, Peer, Borodovsky, Mark, Brooksbank, Cath, Chain, Patrick S. G., Colwell, Rita R., Daffonchio, Daniele G., Danchin, Antoine, de Lorenzo, Victor, Dorrestein, Pieter C., Finn, Robert D., Fraser, Claire M., Gilbert, Jack A., Hallam, Steven J., Hugenholtz, Philip, Ioannidis, John P. A., Jansson, Janet K., Kim, Jihyun F., Klenk, Hans-Peter, Klotz, Martin G., Knight, Rob, Konstantinidis, Konstantinos T., Kyrpides, Nikos C., Mason, Christopher E., McHardy, Alice C., Meyer, Folker, Ouzounis, Christos A., Patrinos, Aristides A. N., Podar, Mircea, Pollard, Katherine S., Ravel, Jacques, Muñoz, Alejandro Reyes, Roberts, Richard J., Rosselló-Móra, Ramon, Sansone, Susanna-Assunta, Schloss, Patrick D., Schriml, Lynn M., Setubal, João C., Sorek, Rotem, Stevens, Rick L., Tiedje, James M., Turjanski, Adrian, Tyson, Gene W., Ussery, David W., Weinstock, George M., White, Owen, Whitman, William B., and Xenarios, Ioannis. Thu . "Toward unrestricted use of public genomic data". United States. doi:10.1126/science.aaw1280.
@article{osti_1501820,
title = {Toward unrestricted use of public genomic data},
author = {Amann, Rudolf I. and Baichoo, Shakuntala and Blencowe, Benjamin J. and Bork, Peer and Borodovsky, Mark and Brooksbank, Cath and Chain, Patrick S. G. and Colwell, Rita R. and Daffonchio, Daniele G. and Danchin, Antoine and de Lorenzo, Victor and Dorrestein, Pieter C. and Finn, Robert D. and Fraser, Claire M. and Gilbert, Jack A. and Hallam, Steven J. and Hugenholtz, Philip and Ioannidis, John P. A. and Jansson, Janet K. and Kim, Jihyun F. and Klenk, Hans-Peter and Klotz, Martin G. and Knight, Rob and Konstantinidis, Konstantinos T. and Kyrpides, Nikos C. and Mason, Christopher E. and McHardy, Alice C. and Meyer, Folker and Ouzounis, Christos A. and Patrinos, Aristides A. N. and Podar, Mircea and Pollard, Katherine S. and Ravel, Jacques and Muñoz, Alejandro Reyes and Roberts, Richard J. and Rosselló-Móra, Ramon and Sansone, Susanna-Assunta and Schloss, Patrick D. and Schriml, Lynn M. and Setubal, João C. and Sorek, Rotem and Stevens, Rick L. and Tiedje, James M. and Turjanski, Adrian and Tyson, Gene W. and Ussery, David W. and Weinstock, George M. and White, Owen and Whitman, William B. and Xenarios, Ioannis},
abstractNote = {All public funding agencies and foundations that support the generation of new data have a data release policy. Some policies require the immediate public release of the produced data, so that everyone will benefit equally from their availability, while other agencies have policies that allow data to be kept private until their initial publication so that the investigator(s) collecting the data have precedence. To address the issues of sharing genomic data, particularly the sharing of pre-publication data, biomedical scientists agreed upon and created a public declaration in 2003, which came to be known as the Fort Lauderdale Agreement (1). This declaration supports the free and unrestricted use of genome sequencing data by the scientific community before those data are used for publication. It proposed that the scientist leading the generation of new data should “make the data generated by the resource immediately and freely available without restriction”. The agreement encouraged users of publicly released data to “appropriately cite the source of the data analysed and acknowledge the resource producers”. Moreover, it recommended that the users of the data should “recognize that the resource producers have a legitimate interest in publishing prominent peer-reviewed reports describing and analyzing the resource that they have produced”. The above recommendations led to the wide adoption of general standards, whereby the scientists that lead the generation of new data retain the “rights” to first publication even after the data become publicly available.},
doi = {10.1126/science.aaw1280},
journal = {Science},
issn = {0036-8075},
number = 6425,
volume = 363,
place = {United States},
year = {2019},
month = {1}
}

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