Cryo-EM structure of human adenovirus D26 reveals the conservation of structural organization among human adenoviruses
- Authors:
- Publication Date:
- Research Org.:
- Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
- Sponsoring Org.:
- National Institutes of Health (NIH)
- OSTI Identifier:
- 1499795
- Resource Type:
- Journal Article
- Journal Name:
- Science Advances
- Additional Journal Information:
- Journal Volume: 3; Journal Issue: 5; Journal ID: ISSN 2375-2548
- Publisher:
- AAAS
- Country of Publication:
- United States
- Language:
- ENGLISH
Citation Formats
Yu, Xiaodi, Veesler, David, Campbell, Melody G., Barry, Mary E., Asturias, Francisco J., Barry, Michael A., and Reddy, Vijay S. Cryo-EM structure of human adenovirus D26 reveals the conservation of structural organization among human adenoviruses. United States: N. p., 2017.
Web. doi:10.1126/sciadv.1602670.
Yu, Xiaodi, Veesler, David, Campbell, Melody G., Barry, Mary E., Asturias, Francisco J., Barry, Michael A., & Reddy, Vijay S. Cryo-EM structure of human adenovirus D26 reveals the conservation of structural organization among human adenoviruses. United States. doi:10.1126/sciadv.1602670.
Yu, Xiaodi, Veesler, David, Campbell, Melody G., Barry, Mary E., Asturias, Francisco J., Barry, Michael A., and Reddy, Vijay S. Mon .
"Cryo-EM structure of human adenovirus D26 reveals the conservation of structural organization among human adenoviruses". United States. doi:10.1126/sciadv.1602670.
@article{osti_1499795,
title = {Cryo-EM structure of human adenovirus D26 reveals the conservation of structural organization among human adenoviruses},
author = {Yu, Xiaodi and Veesler, David and Campbell, Melody G. and Barry, Mary E. and Asturias, Francisco J. and Barry, Michael A. and Reddy, Vijay S.},
abstractNote = {},
doi = {10.1126/sciadv.1602670},
journal = {Science Advances},
issn = {2375-2548},
number = 5,
volume = 3,
place = {United States},
year = {2017},
month = {5}
}
Other availability
Find in Google Scholar
Search WorldCat to find libraries that may hold this journal
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
Viral vectors: from virology to transgene expression: Viral vectors: from virology to transgene expression
journal, April 2009
- Bouard, D.; Alazard-Dany, N.; Cosset, F-L
- British Journal of Pharmacology, Vol. 157, Issue 2
Structures of Adenovirus Incomplete Particles Clarify Capsid Architecture and Show Maturation Changes of Packaging Protein L1 52/55k
journal, July 2015
- Condezo, Gabriela N.; Marabini, Roberto; Ayora, Silvia
- Journal of Virology, Vol. 89, Issue 18
Four Newly Recognized Adenoviruses
journal, June 1961
- Rosen, L.; Baron, S.; Bell, J. A.
- Experimental Biology and Medicine, Vol. 107, Issue 2
2.8 Å resolution reconstruction of the Thermoplasma acidophilum 20S proteasome using cryo-electron microscopy
journal, March 2015
- Campbell, Melody G.; Veesler, David; Cheng, Anchi
- eLife, Vol. 4
Accurate determination of local defocus and specimen tilt in electron microscopy
journal, June 2003
- Mindell, Joseph A.; Grigorieff, Nikolaus
- Journal of Structural Biology, Vol. 142, Issue 3
Switch from capsid protein import to adenovirus assembly by cleavage of nuclear transport signals
journal, December 2003
- Wodrich, H.
- The EMBO Journal, Vol. 22, Issue 23
Infection and Killing of Multiple Myeloma by Adenoviruses
journal, February 2010
- Senac, Julien S.; Doronin, Konstantin; Russell, Stephen J.
- Human Gene Therapy, Vol. 21, Issue 2
The Amphipathic Helix of Adenovirus Capsid Protein VI Contributes to Penton Release and Postentry Sorting
journal, December 2014
- Martinez, Ruben; Schellenberger, Pascale; Vasishtan, Daven
- Journal of Virology, Vol. 89, Issue 4
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
journal, January 1994
- Thompson, Julie D.; Higgins, Desmond G.; Gibson, Toby J.
- Nucleic Acids Research, Vol. 22, Issue 22, p. 4673-4680
Type-Specific Epitope Locations Revealed by X-Ray Crystallographic Study of Adenovirus Type 5 Hexon
journal, January 2000
- Rux, John J.; Burnett, Roger M.
- Molecular Therapy, Vol. 1, Issue 1
A quasi-atomic model of human adenovirus type 5 capsid
journal, April 2005
- Fabry, Céline M. S.; Rosa-Calatrava, Manuel; Conway, James F.
- The EMBO Journal, Vol. 24, Issue 9
Latest Insights on Adenovirus Structure and Assembly
journal, May 2012
- San Martín, Carmen
- Viruses, Vol. 4, Issue 5
Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM
journal, May 2013
- Li, Xueming; Mooney, Paul; Zheng, Shawn
- Nature Methods, Vol. 10, Issue 6
Appion: An integrated, database-driven pipeline to facilitate EM image processing
journal, April 2009
- Lander, Gabriel C.; Stagg, Scott M.; Voss, Neil R.
- Journal of Structural Biology, Vol. 166, Issue 1
Automated molecular microscopy: The new Leginon system
journal, July 2005
- Suloway, Christian; Pulokas, James; Fellmann, Denis
- Journal of Structural Biology, Vol. 151, Issue 1
Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination
journal, September 1998
- Brünger, A. T.; Adams, P. D.; Clore, G. M.
- Acta Crystallographica Section D Biological Crystallography, Vol. 54, Issue 5
Conserved Fiber-Penton Base Interaction Revealed by Nearly Atomic Resolution Cryo-Electron Microscopy of the Structure of Adenovirus Provides Insight into Receptor Interaction
journal, September 2012
- Cao, C.; Dong, X.; Wu, X.
- Journal of Virology, Vol. 86, Issue 22
Adenovirus Composition, Proteolysis, and Disassembly Studied by In-depth Qualitative and Quantitative Proteomics
journal, March 2014
- Benevento, Marco; Di Palma, Serena; Snijder, Joost
- Journal of Biological Chemistry, Vol. 289, Issue 16
Crystal Structure of Human Adenovirus at 3.5 A Resolution
journal, August 2010
- Reddy, V. S.; Natchiar, S. K.; Stewart, P. L.
- Science, Vol. 329, Issue 5995
PROCHECK: a program to check the stereochemical quality of protein structures
journal, April 1993
- Laskowski, R. A.; MacArthur, M. W.; Moss, D. S.
- Journal of Applied Crystallography, Vol. 26, Issue 2
Genetic content and evolution of adenoviruses
journal, November 2003
- Davison, A. J.
- Journal of General Virology, Vol. 84, Issue 11
Structural proteins of adenoviruses
journal, March 1973
- Everitt, Einar; Sundquist, Bo; Pettersson, Ulf
- Virology, Vol. 52, Issue 1
The Structure of the Human Adenovirus 2 Penton
journal, January 2005
- Zubieta, Chloe; Schoehn, Guy; Chroboczek, Jadwiga
- Molecular Cell, Vol. 17, Issue 1
Improved methods for building protein models in electron density maps and the location of errors in these models
journal, March 1991
- Jones, T. A.; Zou, J. Y.; Cowan, S. W.
- Acta Crystallographica Section A Foundations of Crystallography, Vol. 47, Issue 2, p. 110-119
Visualization of -Helices in a 6-Angstrom Resolution Cryoelectron Microscopy Structure of Adenovirus Allows Refinement of Capsid Protein Assignments
journal, September 2006
- Saban, S. D.; Silvestry, M.; Nemerow, G. R.
- Journal of Virology, Vol. 80, Issue 24
Adenovirus Serotype 5 Hexon Mediates Liver Gene Transfer
journal, February 2008
- Waddington, Simon N.; McVey, John H.; Bhella, David
- Cell, Vol. 132, Issue 3
Adenovirus Receptors
journal, September 2005
- Zhang, Y.; Bergelson, J. M.
- Journal of Virology, Vol. 79, Issue 19
An N-terminal domain of adenovirus protein VI fragments membranes by inducing positive membrane curvature
journal, June 2010
- Maier, Oana; Galan, Debra L.; Wodrich, Harald
- Virology, Vol. 402, Issue 1
First-in-Human Evaluation of the Safety and Immunogenicity of a Recombinant Adenovirus Serotype 26 HIV-1 Env Vaccine (IPCAVD 001)
journal, November 2012
- Baden, Lindsey R.; Walsh, Stephen R.; Seaman, Michael S.
- The Journal of Infectious Diseases, Vol. 207, Issue 2
Adenovirus Protein VI Mediates Membrane Disruption following Capsid Disassembly
journal, January 2005
- Wiethoff, C. M.; Wodrich, H.; Gerace, L.
- Journal of Virology, Vol. 79, Issue 4
Low Seroprevalent Species D Adenovirus Vectors as Influenza Vaccines
journal, August 2013
- Weaver, Eric A.; Barry, Michael A.
- PLoS ONE, Vol. 8, Issue 8
The CCP4 suite programs for protein crystallography
journal, September 1994
- ,
- Acta Crystallographica Section D Biological Crystallography, Vol. 50, Issue 5, p. 760-763
Identification of coagulation factor (F)X binding sites on the adenovirus serotype 5 hexon: effect of mutagenesis on FX interactions and gene transfer
journal, July 2009
- Alba, Raul; Bradshaw, Angela C.; Parker, Alan L.
- Blood, Vol. 114, Issue 5
Comparison of the Life Cycles of Genetically Distant Species C and Species D Human Adenoviruses Ad6 and Ad26 in Human Cells
journal, September 2015
- Turner, Mallory A.; Middha, Sumit; Hofherr, Sean E.
- Journal of Virology, Vol. 89, Issue 24
Functional Analysis of Adenovirus Protein IX Identifies Domains Involved in Capsid Stability, Transcriptional Activity, and Nuclear Reorganization
journal, August 2001
- Rosa-Calatrava, M.; Grave, L.; Puvion-Dutilleul, F.
- Journal of Virology, Vol. 75, Issue 15
Likelihood-based classification of cryo-EM images using FREALIGN
journal, September 2013
- Lyumkis, Dmitry; Brilot, Axel F.; Theobald, Douglas L.
- Journal of Structural Biology, Vol. 183, Issue 3
UCSF Chimera?A visualization system for exploratory research and analysis
journal, January 2004
- Pettersen, Eric F.; Goddard, Thomas D.; Huang, Conrad C.
- Journal of Computational Chemistry, Vol. 25, Issue 13
Quantifying the local resolution of cryo-EM density maps
journal, November 2013
- Kucukelbir, Alp; Sigworth, Fred J.; Tagare, Hemant D.
- Nature Methods, Vol. 11, Issue 1
Comparative Seroprevalence and Immunogenicity of Six Rare Serotype Recombinant Adenovirus Vaccine Vectors from Subgroups B and D
journal, February 2007
- Abbink, P.; Lemckert, A. A. C.; Ewald, B. A.
- Journal of Virology, Vol. 81, Issue 9
Species D Adenoviruses as Oncolytics against B-cell Cancers
journal, September 2011
- Chen, C. Y.; Senac, J. S.; Weaver, E. A.
- Clinical Cancer Research, Vol. 17, Issue 21
A triple β-spiral in the adenovirus fibre shaft reveals a new structural motif for a fibrous protein
journal, October 1999
- van Raaij, Mark J.; Mitraki, Anna; Lavigne, Gilles
- Nature, Vol. 401, Issue 6756
Cryo-Electron Microscopy Structure of Adenovirus Type 2 Temperature-Sensitive Mutant 1 Reveals Insight into the Cell Entry Defect
journal, May 2009
- Silvestry, M.; Lindert, S.; Smith, J. G.
- Journal of Virology, Vol. 83, Issue 15
Redundant and Synergistic Mechanisms Control the Sequestration of Blood-born Adenovirus in the Liver
journal, April 2009
- Di Paolo, Nelson C.; van Rooijen, Nico; Shayakhmetov, Dmitry M.
- Molecular Therapy, Vol. 17, Issue 4
Viral DNA and a viral peptide can act as cofactors of adenovirus virion proteinase activity
journal, January 1993
- Mangel, Walter F.; McGrath, William J.; Toledo, Diana L.
- Nature, Vol. 361, Issue 6409
Structures and organization of adenovirus cement proteins provide insights into the role of capsid maturation in virus entry and infection
journal, July 2014
- Reddy, V. S.; Nemerow, G. R.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 32
The Buccaneer software for automated model building. 1. Tracing protein chains
journal, August 2006
- Cowtan, Kevin
- Acta Crystallographica Section D Biological Crystallography, Vol. 62, Issue 9
Structure and Uncoating of Immature Adenovirus
journal, September 2009
- Pérez-Berná, Ana J.; Marabini, Roberto; Scheres, Sjors H. W.
- Journal of Molecular Biology, Vol. 392, Issue 2
Structural proteins of adenoviruses
journal, September 1975
- Everitt, Einar; Lutter, Leonard; Philipson, Lennart
- Virology, Vol. 67, Issue 1
Localized reconstruction of subunits from electron cryomicroscopy images of macromolecular complexes
journal, November 2015
- Ilca, Serban L.; Kotecha, Abhay; Sun, Xiaoyu
- Nature Communications, Vol. 6, Issue 1
Fitting molecular fragments into electron density
journal, December 2007
- Cowtan, Kevin
- Acta Crystallographica Section D Biological Crystallography, Vol. 64, Issue 1
Mining the adenovirus virome for oncolytics against multiple solid tumor types
journal, September 2011
- Chen, C. Y.; Weaver, E. A.; Khare, R.
- Cancer Gene Therapy, Vol. 18, Issue 10
RELION: Implementation of a Bayesian approach to cryo-EM structure determination
journal, December 2012
- Scheres, Sjors H. W.
- Journal of Structural Biology, Vol. 180, Issue 3, p. 519-530
Three-Dimensional Structure of Canine Adenovirus Serotype 2 Capsid
journal, January 2008
- Schoehn, G.; El Bakkouri, M.; Fabry, C. M. S.
- Journal of Virology, Vol. 82, Issue 7
The Cleaved N-Terminus of pVI Binds Peripentonal Hexons in Mature Adenovirus
journal, May 2014
- Snijder, Joost; Benevento, Marco; Moyer, Crystal L.
- Journal of Molecular Biology, Vol. 426, Issue 9
Crystallization and preliminary X-ray diffraction analysis of human adenovirus
journal, June 2010
- Reddy, V. S.; Natchiar, S. K.; Gritton, L.
- Virology, Vol. 402, Issue 1
Coagulation Factor X Activates Innate Immunity to Human Species C Adenovirus
journal, September 2012
- Doronin, K.; Flatt, J. W.; Di Paolo, N. C.
- Science, Vol. 338, Issue 6108
Atomic Structure of Human Adenovirus by Cryo-EM Reveals Interactions Among Protein Networks
journal, August 2010
- Liu, H.; Jin, L.; Koh, S. B. S.
- Science, Vol. 329, Issue 5995
Adenovirus Activates Complement by Distinctly Different Mechanisms In Vitro and In Vivo: Indirect Complement Activation by Virions In Vivo
journal, March 2009
- Tian, J.; Xu, Z.; Smith, J. S.
- Journal of Virology, Vol. 83, Issue 11
Structure, Function and Dynamics in Adenovirus Maturation
journal, November 2014
- Mangel, Walter; San Martín, Carmen
- Viruses, Vol. 6, Issue 11
Functional Genetic and Biophysical Analyses of Membrane Disruption by Human Adenovirus
journal, January 2011
- Moyer, C. L.; Wiethoff, C. M.; Maier, O.
- Journal of Virology, Vol. 85, Issue 6
Avidin-based targeting and purification of a protein IX-modified, metabolically biotinylated adenoviral vector
journal, June 2004
- Campos, Samuel K.; Parrott, M. Brandon; Barry, Michael A.
- Molecular Therapy, Vol. 9, Issue 6
Precise beam-tilt alignment and collimation are required to minimize the phase error associated with coma in high-resolution cryo-EM
journal, April 2011
- Glaeser, Robert M.; Typke, Dieter; Tiemeijer, Peter C.
- Journal of Structural Biology, Vol. 174, Issue 1
The Role of Capsid Maturation on Adenovirus Priming for Sequential Uncoating
journal, July 2012
- Pérez-Berná, Ana J.; Ortega-Esteban, Alvaro; Menéndez-Conejero, Rosa
- Journal of Biological Chemistry, Vol. 287, Issue 37
Interaction of the Human Adenovirus Proteinase with Its 11-Amino Acid Cofactor pVIc †
journal, October 2001
- Baniecki, Mary Lynn; McGrath, William J.; McWhirter, Sarah M.
- Biochemistry, Vol. 40, Issue 41
Model of the Trimeric Fiber and Its Interactions with the Pentameric Penton Base of Human Adenovirus by Cryo-electron Microscopy
journal, March 2011
- Liu, Hongrong; Wu, Lily; Zhou, Z. Hong
- Journal of Molecular Biology, Vol. 406, Issue 5
Coagulation factor X shields adenovirus type 5 from attack by natural antibodies and complement
journal, March 2013
- Xu, Zhili; Qiu, Qi; Tian, Jie
- Nature Medicine, Vol. 19, Issue 4
Characterization of species C human adenovirus serotype 6 (Ad6)
journal, March 2011
- Weaver, Eric A.; Hillestad, Mathew L.; Khare, Reeti
- Virology, Vol. 412, Issue 1
Localization of the N-Terminus of Minor Coat Protein IIIa in the Adenovirus Capsid
journal, November 2008
- San Martín, Carmen; Glasgow, Joel N.; Borovjagin, Anton
- Journal of Molecular Biology, Vol. 383, Issue 4
Vitrification after multiple rounds of sample application and blotting improves particle density on cryo-electron microscopy grids
journal, April 2017
- Snijder, Joost; Borst, Andrew J.; Dosey, Annie
- Journal of Structural Biology, Vol. 198, Issue 1
Scalable web services for the PSIPRED Protein Analysis Workbench
journal, June 2013
- Buchan, Daniel W. A.; Minneci, Federico; Nugent, Tim C. O.
- Nucleic Acids Research, Vol. 41, Issue W1
Cryo-EM structures of two bovine adenovirus type 3 intermediates
journal, February 2014
- Cheng, Lingpeng; Huang, Xiaoxing; Li, Xiaomin
- Virology, Vol. 450-451
EMAN: Semiautomated Software for High-Resolution Single-Particle Reconstructions
journal, December 1999
- Ludtke, Steven J.; Baldwin, Philip R.; Chiu, Wah
- Journal of Structural Biology, Vol. 128, Issue 1
FindEM—a fast, efficient program for automatic selection of particles from electron micrographs
journal, January 2004
- Roseman, A.
- Journal of Structural Biology, Vol. 145, Issue 1-2