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Title: Structural and functional characterization of the TYW3/Taw3 class of SAM-dependent methyltransferases

Authors:
; ; ; ; ; ; ;
Publication Date:
Research Org.:
Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Org.:
FOREIGN
OSTI Identifier:
1498301
Resource Type:
Journal Article
Journal Name:
RNA
Additional Journal Information:
Journal Volume: 23; Journal Issue: 3; Journal ID: ISSN 1355-8382
Publisher:
Cambridge University Press
Country of Publication:
United States
Language:
ENGLISH

Citation Formats

Currie, Mark A., Brown, Greg, Wong, Andrew, Ohira, Takayuki, Sugiyama, Kei, Suzuki, Tsutomu, Yakunin, Alexander F., and Jia, Zongchao. Structural and functional characterization of the TYW3/Taw3 class of SAM-dependent methyltransferases. United States: N. p., 2016. Web. doi:10.1261/rna.057943.116.
Currie, Mark A., Brown, Greg, Wong, Andrew, Ohira, Takayuki, Sugiyama, Kei, Suzuki, Tsutomu, Yakunin, Alexander F., & Jia, Zongchao. Structural and functional characterization of the TYW3/Taw3 class of SAM-dependent methyltransferases. United States. doi:10.1261/rna.057943.116.
Currie, Mark A., Brown, Greg, Wong, Andrew, Ohira, Takayuki, Sugiyama, Kei, Suzuki, Tsutomu, Yakunin, Alexander F., and Jia, Zongchao. Thu . "Structural and functional characterization of the TYW3/Taw3 class of SAM-dependent methyltransferases". United States. doi:10.1261/rna.057943.116.
@article{osti_1498301,
title = {Structural and functional characterization of the TYW3/Taw3 class of SAM-dependent methyltransferases},
author = {Currie, Mark A. and Brown, Greg and Wong, Andrew and Ohira, Takayuki and Sugiyama, Kei and Suzuki, Tsutomu and Yakunin, Alexander F. and Jia, Zongchao},
abstractNote = {},
doi = {10.1261/rna.057943.116},
journal = {RNA},
issn = {1355-8382},
number = 3,
volume = 23,
place = {United States},
year = {2016},
month = {12}
}

Works referenced in this record:

Insights into the structure, function and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteria
journal, December 2009

  • Kaminska, Katarzyna H.; Purta, Elzbieta; Hansen, Lykke H.
  • Nucleic Acids Research, Vol. 38, Issue 5
  • DOI: 10.1093/nar/gkp1142

Origin of the nucleoside Y in yeast tRNA Phe
journal, December 1973


A primordial tRNA modification required for the evolution of life?
journal, January 2001


AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
journal, December 2009

  • Morris, Garrett M.; Huey, Ruth; Lindstrom, William
  • Journal of Computational Chemistry, Vol. 30, Issue 16
  • DOI: 10.1002/jcc.21256

Structure of Thermotoga maritima Stationary Phase Survival Protein SurE
journal, November 2001


Iron–sulfur proteins responsible for RNA modifications
journal, June 2015

  • Kimura, Satoshi; Suzuki, Tsutomu
  • Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, Vol. 1853, Issue 6
  • DOI: 10.1016/j.bbamcr.2014.12.010

Specific correlation between the wobble modification deficiency in mutant tRNAs and the clinical features of a human mitochondrial disease
journal, May 2005

  • Kirino, Y.; Goto, Y. -i.; Campos, Y.
  • Proceedings of the National Academy of Sciences, Vol. 102, Issue 20
  • DOI: 10.1073/pnas.0500563102

The SHS2 module is a common structural theme in functionally diverse protein groups, like Rpb7p, FtsA, GyrI, and MTH1598/TM1083 superfamilies
journal, May 2004

  • Anantharaman, V.; Aravind, L.
  • Proteins: Structure, Function, and Bioinformatics, Vol. 56, Issue 4
  • DOI: 10.1002/prot.20140

Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4†
journal, March 2009

  • Suzuki, Yoko; Noma, Akiko; Suzuki, Tsutomu
  • Nucleic Acids Research, Vol. 37, Issue 9
  • DOI: 10.1093/nar/gkp158

Maximum-likelihood density modification
journal, August 2000

  • Terwilliger, Thomas C.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 56, Issue 8
  • DOI: 10.1107/S0907444900005072

Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA
journal, April 2006


Discovery of the β-barrel–type RNA methyltransferase responsible for N 6 -methylation of N 6 -threonylcarbamoyladenosine in tRNAs
journal, July 2014

  • Kimura, Satoshi; Miyauchi, Kenjyo; Ikeuchi, Yoshiho
  • Nucleic Acids Research, Vol. 42, Issue 14
  • DOI: 10.1093/nar/gku618

Enzymic replacement of the anticodon of yeast tRNAPhe
journal, March 1982

  • Bruce, A. Gregory; Uhlenbeck, Olke C.
  • Biochemistry, Vol. 21, Issue 5
  • DOI: 10.1021/bi00534a007

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination
journal, September 1998

  • Brünger, A. T.; Adams, P. D.; Clore, G. M.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 54, Issue 5
  • DOI: 10.1107/S0907444998003254

Mutation in WDR4 impairs tRNA m7G46 methylation and causes a distinct form of microcephalic primordial dwarfism
journal, September 2015


Biosynthesis of Wyosine Derivatives in tRNA: An Ancient and Highly Diverse Pathway in Archaea
journal, April 2010

  • de Crécy-Lagard, Valérie; Brochier-Armanet, Céline; Urbonavičius, Jaunius
  • Molecular Biology and Evolution, Vol. 27, Issue 9
  • DOI: 10.1093/molbev/msq096

Crystal structure of a novel JmjC-domain-containing protein, TYW5, involved in tRNA modification
journal, October 2010

  • Kato, Megumi; Araiso, Yuhei; Noma, Akiko
  • Nucleic Acids Research, Vol. 39, Issue 4
  • DOI: 10.1093/nar/gkq919

XtalView/Xfit—A Versatile Program for Manipulating Atomic Coordinates and Electron Density
journal, April 1999


MODOMICS: a database of RNA modification pathways—2013 update
journal, October 2012

  • Machnicka, Magdalena A.; Milanowska, Kaja; Osman Oglou, Okan
  • Nucleic Acids Research, Vol. 41, Issue D1
  • DOI: 10.1093/nar/gks1007

Human Mitochondrial Diseases Associated with tRNA Wobble Modification Deficiency
journal, April 2005


The nucleotide sequence of phenylalanine tRNA 2 of Drosophila melanogaster: four isoacceptors with one basic sequence
journal, January 1979

  • Altwegg, Martin; Kubli, Eric
  • Nucleic Acids Research, Vol. 7, Issue 1
  • DOI: 10.1093/nar/7.1.93

Crystal Structure of the Radical SAM Enzyme Catalyzing Tricyclic Modified Base Formation in tRNA
journal, October 2007


5-methylcytosine in RNA: detection, enzymatic formation and biological functions
journal, December 2009

  • Motorin, Yuri; Lyko, Frank; Helm, Mark
  • Nucleic Acids Research, Vol. 38, Issue 5
  • DOI: 10.1093/nar/gkp1117

Many paths to methyltransfer: a chronicle of convergence
journal, June 2003


NMRPipe: A multidimensional spectral processing system based on UNIX pipes
journal, November 1995

  • Delaglio, Frank; Grzesiek, Stephan; Vuister, GeertenW.
  • Journal of Biomolecular NMR, Vol. 6, Issue 3
  • DOI: 10.1007/BF00197809

Expanding Role of the Jumonji C Domain as an RNA Hydroxylase
journal, August 2010

  • Noma, Akiko; Ishitani, Ryuichiro; Kato, Megumi
  • Journal of Biological Chemistry, Vol. 285, Issue 45
  • DOI: 10.1074/jbc.M110.156398

Transfer RNA Modification Status Influences Retroviral Ribosomal Frameshifting
journal, March 1999


Hypomodification of Transfer RNA in Cancer with Respect to Queuosine
journal, October 2005

  • Pathak, Chandramani; Jaiswal, Yogesh K.; Vinayak, Manjula
  • RNA Biology, Vol. 2, Issue 4
  • DOI: 10.4161/rna.2.4.2417

Primary structure of Bombyx mori posterior silkgland tRNAPhe
journal, January 1980


Defects in tRNA Anticodon Loop 2′- O -Methylation Are Implicated in Nonsyndromic X-Linked Intellectual Disability due to Mutations in FTSJ1
journal, September 2015

  • Guy, Michael P.; Shaw, Marie; Weiner, Catherine L.
  • Human Mutation, Vol. 36, Issue 12
  • DOI: 10.1002/humu.22897

DaliLite workbench for protein structure comparison
journal, June 2000


Structure of an archaeal TYW1, the enzyme catalyzing the second step of wye-base biosynthesis
journal, September 2007

  • Goto-Ito, Sakurako; Ishii, Ryohei; Ito, Takuhiro
  • Acta Crystallographica Section D Biological Crystallography, Vol. 63, Issue 10
  • DOI: 10.1107/S0907444907040668

Automated MAD and MIR structure solution
journal, April 1999

  • Terwilliger, Thomas C.; Berendzen, Joel
  • Acta Crystallographica Section D Biological Crystallography, Vol. 55, Issue 4
  • DOI: 10.1107/S0907444999000839

Structural basis of AdoMet-dependent aminocarboxypropyl transfer reaction catalyzed by tRNA-wybutosine synthesizing enzyme, TYW2
journal, August 2009

  • Umitsu, Masataka; Nishimasu, Hiroshi; Noma, Akiko
  • Proceedings of the National Academy of Sciences, Vol. 106, Issue 37
  • DOI: 10.1073/pnas.0905270106

Structures of two new “minimalist” modified nucleosides from archaeal tRNA
journal, April 2004