Mechanistic basis for the evolution of chalcone synthase catalytic cysteine reactivity in land plants

Liou, Geoffrey; Chiang, Ying-Chih; Wang, Yi; Weng, Jing-Ke

doi:10.1074/jbc.RA118.005695

Title: Mechanistic basis for the evolution of chalcone synthase catalytic cysteine reactivity in land plants

Authors:

;

Publication Date:: Fri Oct 05 00:00:00 EDT 2018

Research Org.:: Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)

Sponsoring Org.:: NIHFOREIGNHHMI

OSTI Identifier:: 1488942

Resource Type:: Journal Article

Journal Name:: Journal of Biological Chemistry

Additional Journal Information:: Journal Volume: 293; Journal Issue: 48; Journal ID: ISSN 0021-9258

Publisher:: American Society for Biochemistry and Molecular Biology

Country of Publication:: United States

Language:: ENGLISH

Citation Formats


                    Liou, Geoffrey, Chiang, Ying-Chih, Wang, Yi, and Weng, Jing-Ke. Mechanistic basis for the evolution of chalcone synthase catalytic cysteine reactivity in land plants.  United States: N. p., 2018. 
        Web.  doi:10.1074/jbc.RA118.005695.

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                    Liou, Geoffrey, Chiang, Ying-Chih, Wang, Yi, & Weng, Jing-Ke. Mechanistic basis for the evolution of chalcone synthase catalytic cysteine reactivity in land plants.  United States.  https://doi.org/10.1074/jbc.RA118.005695

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                    Liou, Geoffrey, Chiang, Ying-Chih, Wang, Yi, and Weng, Jing-Ke. 2018.  
        "Mechanistic basis for the evolution of chalcone synthase catalytic cysteine reactivity in land plants".  United States.  https://doi.org/10.1074/jbc.RA118.005695.

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@article{osti_1488942,

  title        = {Mechanistic basis for the evolution of chalcone synthase catalytic cysteine reactivity in land plants},

  author       = {Liou, Geoffrey and Chiang, Ying-Chih and Wang, Yi and Weng, Jing-Ke},

  abstractNote = {},

  doi          = {10.1074/jbc.RA118.005695},

  url          = {https://www.osti.gov/biblio/1488942},
  journal      = {Journal of Biological Chemistry},

  issn         = {0021-9258},

  number       = 48,

  volume       = 293,

  place        = {United States},

  year         = {Fri Oct 05 00:00:00 EDT 2018},

  month        = {Fri Oct 05 00:00:00 EDT 2018}

}

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Title: Mechanistic basis for the evolution of chalcone synthase catalytic cysteine reactivity in land plants

Citation Formats

Chemodiversity in Selaginella: a reference system for parallel and convergent metabolic evolution in terrestrial plants journal, January 2013

Oxidation state of the active-site cysteine in protein tyrosine phosphatase 1B journal, June 2003

Constant pressure molecular dynamics for molecular systems journal, December 1983

iMOSFLM : a new graphical interface for diffraction-image processing with MOSFLM journal, March 2011

An Aldol Switch Discovered in Stilbene Synthases Mediates Cyclization Specificity of Type III Polyketide Synthases journal, September 2004

Overview of the CCP 4 suite and current developments journal, March 2011

Canonical sampling through velocity rescaling journal, January 2007

Particle mesh Ewald: An N ⋅log( N ) method for Ewald sums in large systems journal, June 1993

The origin and evolution of lignin biosynthesis: Tansley review journal, June 2010

Coot model-building tools for molecular graphics journal, November 2004

Deciphering key features in protein structures with the new ENDscript server journal, April 2014

Data access for the 1,000 Plants (1KP) project journal, October 2014

The chalcone synthase superfamily of type III polyketide synthases journal, December 2002

Ionisation of Cysteine Residues at the Termini of Model α-Helical Peptides. Relevance to Unusual Thiol pKaValues in Proteins of the Thioredoxin Family journal, November 1995

Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ 1 and χ 2 Dihedral Angles journal, August 2012

LINCS: A linear constraint solver for molecular simulations journal, September 1997

P-LINCS: A Parallel Linear Constraint Solver for Molecular Simulation journal, December 2007

PHENIX: a comprehensive Python-based system for macromolecular structure solution journal, January 2010

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets journal, March 2016

Mutagenesis of 3α-Hydroxysteroid Dehydrogenase Reveals a “Push−Pull” Mechanism for Proton Transfer in Aldo−Keto Reductases † journal, March 1998

Analysis of Arabidopsis mutants deficient in flavonoid biosynthesis journal, November 1995

Polymorphic transitions in single crystals: A new molecular dynamics method journal, December 1981

Flavonoids in Food and Their Health Benefits journal, January 2004

GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers journal, September 2015

Expanding the functional diversity of proteins through cysteine oxidation journal, December 2008

A proton relay enhances H2O2 sensitivity of GAPDH to facilitate metabolic adaptation journal, January 2015

MUSCLE: multiple sequence alignment with high accuracy and high throughput journal, March 2004

Scaling and assessment of data quality journal, December 2005

FastML: a web server for probabilistic reconstruction of ancestral sequences journal, May 2012

UCSF Chimera?A visualization system for exploratory research and analysis journal, January 2004

Mechanism of Chalcone Synthase: p journal, September 2000

Structural control of polyketide formation in plant-specific polyketide synthases journal, December 2000

KVFinder: steered identification of protein cavities as a PyMOL plugin journal, January 2014

Flavonoid Biosynthesis. A Colorful Model for Genetics, Biochemistry, Cell Biology, and Biotechnology journal, June 2001

VMD: Visual molecular dynamics journal, February 1996

Chemodiversity in Selaginella: a reference system for parallel and convergent metabolic evolution in terrestrial plants
journal, January 2013

Oxidation state of the active-site cysteine in protein tyrosine phosphatase 1B
journal, June 2003

Constant pressure molecular dynamics for molecular systems
journal, December 1983

iMOSFLM : a new graphical interface for diffraction-image processing with MOSFLM
journal, March 2011

An Aldol Switch Discovered in Stilbene Synthases Mediates Cyclization Specificity of Type III Polyketide Synthases
journal, September 2004

Overview of the CCP 4 suite and current developments
journal, March 2011

Canonical sampling through velocity rescaling
journal, January 2007

Particle mesh Ewald: An N ⋅log( N ) method for Ewald sums in large systems
journal, June 1993

The origin and evolution of lignin biosynthesis: Tansley review
journal, June 2010

Coot model-building tools for molecular graphics
journal, November 2004

Deciphering key features in protein structures with the new ENDscript server
journal, April 2014

Data access for the 1,000 Plants (1KP) project
journal, October 2014

The chalcone synthase superfamily of type III polyketide synthases
journal, December 2002

Ionisation of Cysteine Residues at the Termini of Model α-Helical Peptides. Relevance to Unusual Thiol pKaValues in Proteins of the Thioredoxin Family
journal, November 1995

Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ ₁ and χ ₂ Dihedral Angles
journal, August 2012

LINCS: A linear constraint solver for molecular simulations
journal, September 1997

P-LINCS: A Parallel Linear Constraint Solver for Molecular Simulation
journal, December 2007

PHENIX: a comprehensive Python-based system for macromolecular structure solution
journal, January 2010

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
journal, March 2016

Mutagenesis of 3α-Hydroxysteroid Dehydrogenase Reveals a “Push−Pull” Mechanism for Proton Transfer in Aldo−Keto Reductases ^†
journal, March 1998

Analysis of Arabidopsis mutants deficient in flavonoid biosynthesis
journal, November 1995

Polymorphic transitions in single crystals: A new molecular dynamics method
journal, December 1981

Flavonoids in Food and Their Health Benefits
journal, January 2004

GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
journal, September 2015

Expanding the functional diversity of proteins through cysteine oxidation
journal, December 2008

A proton relay enhances H2O2 sensitivity of GAPDH to facilitate metabolic adaptation
journal, January 2015

MUSCLE: multiple sequence alignment with high accuracy and high throughput
journal, March 2004

Scaling and assessment of data quality
journal, December 2005

FastML: a web server for probabilistic reconstruction of ancestral sequences
journal, May 2012

UCSF Chimera?A visualization system for exploratory research and analysis
journal, January 2004

Mechanism of Chalcone Synthase: p
journal, September 2000

Structural control of polyketide formation in plant-specific polyketide synthases
journal, December 2000

KVFinder: steered identification of protein cavities as a PyMOL plugin
journal, January 2014

Flavonoid Biosynthesis. A Colorful Model for Genetics, Biochemistry, Cell Biology, and Biotechnology
journal, June 2001

VMD: Visual molecular dynamics
journal, February 1996