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Title: Structural basis for the second step of group II intron splicing

Authors:
; ; ; ; ; ORCiD logo
Publication Date:
Research Org.:
Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Org.:
National Institutes of Health (NIH)
OSTI Identifier:
1482239
Resource Type:
Journal Article
Journal Name:
Nature Communications
Additional Journal Information:
Journal Volume: 9; Journal Issue: 1; Journal ID: ISSN 2041-1723
Publisher:
Nature Publishing Group
Country of Publication:
United States
Language:
ENGLISH

Citation Formats

Chan, Russell T., Peters, Jessica K., Robart, Aaron R., Wiryaman, Timothy, Rajashankar, Kanagalaghatta R., and Toor, Navtej. Structural basis for the second step of group II intron splicing. United States: N. p., 2018. Web. doi:10.1038/s41467-018-06678-0.
Chan, Russell T., Peters, Jessica K., Robart, Aaron R., Wiryaman, Timothy, Rajashankar, Kanagalaghatta R., & Toor, Navtej. Structural basis for the second step of group II intron splicing. United States. doi:10.1038/s41467-018-06678-0.
Chan, Russell T., Peters, Jessica K., Robart, Aaron R., Wiryaman, Timothy, Rajashankar, Kanagalaghatta R., and Toor, Navtej. Thu . "Structural basis for the second step of group II intron splicing". United States. doi:10.1038/s41467-018-06678-0.
@article{osti_1482239,
title = {Structural basis for the second step of group II intron splicing},
author = {Chan, Russell T. and Peters, Jessica K. and Robart, Aaron R. and Wiryaman, Timothy and Rajashankar, Kanagalaghatta R. and Toor, Navtej},
abstractNote = {},
doi = {10.1038/s41467-018-06678-0},
journal = {Nature Communications},
issn = {2041-1723},
number = 1,
volume = 9,
place = {United States},
year = {2018},
month = {11}
}

Works referenced in this record:

Structure determination of group II introns
journal, August 2017


RCrane : semi-automated RNA model building
journal, July 2012

  • Keating, Kevin S.; Pyle, Anna Marie
  • Acta Crystallographica Section D Biological Crystallography, Vol. 68, Issue 8
  • DOI: 10.1107/S0907444912018549

Postcatalytic spliceosome structure reveals mechanism of 3′–splice site selection
journal, November 2017

  • Wilkinson, Max E.; Fica, Sebastian M.; Galej, Wojciech P.
  • Science, Vol. 358, Issue 6368
  • DOI: 10.1126/science.aar3729

RNA catalyses nuclear pre-mRNA splicing
journal, November 2013

  • Fica, Sebastian M.; Tuttle, Nicole; Novak, Thaddeus
  • Nature, Vol. 503, Issue 7475
  • DOI: 10.1038/nature12734

Correcting pervasive errors in RNA crystallography through enumerative structure prediction
journal, December 2012

  • Chou, Fang-Chieh; Sripakdeevong, Parin; Dibrov, Sergey M.
  • Nature Methods, Vol. 10, Issue 1
  • DOI: 10.1038/nmeth.2262

Detection of RNA–Protein Interactions in Living Cells with SHAPE
journal, November 2015


Coot model-building tools for molecular graphics
journal, November 2004

  • Emsley, Paul; Cowtan, Kevin
  • Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 12, p. 2126-2132
  • DOI: 10.1107/S0907444904019158

Sequencing of lariat termini in S. cerevisiae reveals 5′ splice sites, branch points, and novel splicing events
journal, December 2015


Crystal structure of a eukaryotic group II intron lariat
journal, September 2014

  • Robart, Aaron R.; Chan, Russell T.; Peters, Jessica K.
  • Nature, Vol. 514, Issue 7521
  • DOI: 10.1038/nature13790

Collaboration gets the most out of software
journal, September 2013


Crystal Structure of a Self-Spliced Group II Intron
journal, April 2008


Features and development of Coot
journal, March 2010

  • Emsley, P.; Lohkamp, B.; Scott, W. G.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 4
  • DOI: 10.1107/S0907444910007493

Linking the group II intron catalytic domains: tertiary contacts and structural features of domain 3
journal, October 2005


Refinement of severely incomplete structures with maximum likelihood in BUSTER–TNT
journal, November 2004

  • Blanc, E.; Roversi, P.; Vonrhein, C.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 12
  • DOI: 10.1107/S0907444904016427

Structural basis of pre-mRNA splicing
journal, August 2015


Semiautomated model building for RNA crystallography using a directed rotameric approach
journal, April 2010

  • Keating, K. S.; Pyle, A. M.
  • Proceedings of the National Academy of Sciences, Vol. 107, Issue 18
  • DOI: 10.1073/pnas.0911888107

A three-dimensional perspective on exon binding by a group II self-splicing intron
journal, September 2000


PHENIX: a comprehensive Python-based system for macromolecular structure solution
journal, January 2010

  • Adams, Paul D.; Afonine, Pavel V.; Bunkóczi, Gábor
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2, p. 213-221
  • DOI: 10.1107/S0907444909052925

Crystal structure of a group II intron in the pre-catalytic state
journal, April 2012

  • Chan, Russell T.; Robart, Aaron R.; Rajashankar, Kanagalaghatta R.
  • Nature Structural & Molecular Biology, Vol. 19, Issue 5
  • DOI: 10.1038/nsmb.2270

Length changes in the joining segment between domains 5 and 6 of a group II intron inhibit self-splicing and alter 3' splice site selection.
journal, October 1996

  • Boulanger, S. C.; Faix, P. H.; Yang, H.
  • Molecular and Cellular Biology, Vol. 16, Issue 10
  • DOI: 10.1128/MCB.16.10.5896

Metal dependence and branched RNA cocrystal structures of the RNA lariat debranching enzyme Dbr1
journal, December 2016

  • Clark, Nathaniel E.; Katolik, Adam; Roberts, Kenneth M.
  • Proceedings of the National Academy of Sciences, Vol. 113, Issue 51
  • DOI: 10.1073/pnas.1612729114

Base-pairing interactions involving the 5′ and 3′-terminal nucleotides of group II self-splicing introns
journal, June 1990


Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae
journal, December 2017


Crystal structures of a group II intron lariat primed for reverse splicing
journal, December 2016


FEM: feature-enhanced map
journal, February 2015

  • Afonine, Pavel V.; Moriarty, Nigel W.; Mustyakimov, Marat
  • Acta Crystallographica Section D Biological Crystallography, Vol. 71, Issue 3
  • DOI: 10.1107/S1399004714028132

Deletion of a conserved dinucleotide inhibits the second step of group II intron splicing
journal, November 2000


Cryo-EM structure of the spliceosome immediately after branching
journal, July 2016

  • Galej, Wojciech P.; Wilkinson, Max E.; Fica, Sebastian M.
  • Nature, Vol. 537, Issue 7619
  • DOI: 10.1038/nature19316

Structure of a yeast step II catalytically activated spliceosome
journal, December 2016


Structure of the yeast spliceosomal postcatalytic P complex
journal, November 2017


Cryo-EM structure of a human spliceosome activated for step 2 of splicing
journal, January 2017

  • Bertram, Karl; Agafonov, Dmitry E.; Liu, Wen-Ti
  • Nature, Vol. 542, Issue 7641
  • DOI: 10.1038/nature21079

Structure of a spliceosome remodelled for exon ligation
journal, January 2017

  • Fica, Sebastian M.; Oubridge, Chris; Galej, Wojciech P.
  • Nature, Vol. 542, Issue 7641
  • DOI: 10.1038/nature21078

Super-resolution biomolecular crystallography with low-resolution data
journal, April 2010

  • Schröder, Gunnar F.; Levitt, Michael; Brunger, Axel T.
  • Nature, Vol. 464, Issue 7292
  • DOI: 10.1038/nature08892

Visualizing Group II Intron Catalysis through the Stages of Splicing
journal, October 2012