skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Unimolecular Reaction Pathways of a γ-Ketohydroperoxide from Combined Application of Automated Reaction Discovery Methods

Journal Article · · Journal of the American Chemical Society
DOI:https://doi.org/10.1021/jacs.7b11009· OSTI ID:1473944

Ketohydroperoxides are important in liquid-phase autoxidation and in gas-phase partial oxidation and pre-ignition chemistry, but because of their low concentration, instability, and various analytical chemistry limitations, it has been challenging to experimentally determine their reactivity, and only a few pathways are known. In the present work, 75 elementary-step unimolecular reactions of the simplest γ-ketohydroperoxide, 3-hydroperoxypropanal, were discovered by a combination of density functional theory with several automated transition-state search algorithms: the Berny algorithm coupled with the freezing string method, single- and double-ended growing string methods, the heuristic KinBot algorithm, and the single-component artificial force induced reaction method (SC-AFIR). The present joint approach significantly outperforms previous manual and automated transition-state searches – 68 of the reactions of γ-ketohydroperoxide discovered here were previously unknown and completely unexpected. All of the methods found the lowest-energy transition state, which corresponds to the first step of the Korcek mechanism, but each algorithm except for SC-AFIR detected several reactions not found by any of the other methods. We show that the low-barrier chemical reactions involve promising new chemistry that may be relevant in atmospheric and combustion systems. Our study highlights the complexity of chemical space exploration and the advantage of combined application of several approaches. Altogether, the present work demonstrates both the power and the weaknesses of existing fully automated approaches for reaction discovery which suggest possible directions for further method development and assessment in order to enable reliable discovery of all important reactions of any specified reactant(s).

Research Organization:
Sandia National Lab. (SNL-CA), Livermore, CA (United States); Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
Grant/Contract Number:
AC04-94AL85000; AC02-05CH11231
OSTI ID:
1473944
Alternate ID(s):
OSTI ID: 1421464
Report Number(s):
SAND-2018-9927J; 667762
Journal Information:
Journal of the American Chemical Society, Vol. 140, Issue 3; ISSN 0002-7863
Publisher:
American Chemical Society (ACS)Copyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 60 works
Citation information provided by
Web of Science

References (77)

Ab Initio Reactive Computer Aided Molecular Design journal March 2017
Finding reaction mechanisms, intuitive or otherwise journal January 2017
From theoretical reaction dynamics to chemical modeling of combustion journal January 2017
Unraveling Reaction Pathways and Specifying Reaction Kinetics for Complex Systems journal July 2012
Heterogeneous Catalysis journal February 2015
A Holy Grail in Chemistry: Computational Catalyst Design: Feasible or Fiction? journal March 2017
Catalysts by Design: The Power of Theory journal March 2017
Theoretical Chemical Kinetics in Tropospheric Chemistry: Methodologies and Applications journal February 2015
Challenges and opportunities for molecule-based management of chemical processes journal August 2016
New Pathways for Formation of Acids and Carbonyl Products in Low-Temperature Oxidation: The Korcek Decomposition of γ-Ketohydroperoxides journal July 2013
Unconventional Peroxy Chemistry in Alcohol Oxidation: The Water Elimination Pathway journal January 2013
Aspects of the reaction mechanism of ethane combustion. Conformations of the ethylperoxy radical journal October 1992
Iron(III)-catalysed carbonyl–olefin metathesis journal April 2016
Studies of the Mechanism and Origins of Enantioselectivity for the Chiral Phosphoric Acid-Catalyzed Stereoselective Spiroketalization Reactions journal December 2015
Design and implementation of a next-generation software interface for on-the-fly quantum and force field calculations in automated reaction mechanism generation journal May 2013
Mindless Chemistry journal April 2006
Automated Discovery of Elementary Chemical Reaction Steps Using Freezing String and Berny Optimization Methods journal August 2015
Multipath Variational Transition State Theory: Rate Constant of the 1,4-Hydrogen Shift Isomerization of the 2-Cyclohexylethyl Radical journal December 2011
Escaping free-energy minima journal September 2002
Discovering chemistry with an ab initio nanoreactor journal November 2014
Artificial Force Induced Reaction (AFIR) Method for Exploring Quantum Chemical Potential Energy Surfaces journal June 2016
Single-ended transition state finding with the growing string method journal January 2015
Automatic Reaction Pathway Search via Combined Molecular Dynamics and Coordinate Driving Method journal February 2017
Reliable Transition State Searches Integrated with the Growing String Method journal June 2013
Heuristics-Guided Exploration of Reaction Mechanisms journal November 2015
Efficient exploration of reaction paths via a freezing string method journal December 2011
Growing string method with interpolation and optimization in internal coordinates: Method and examples journal May 2013
A climbing image nudged elastic band method for finding saddle points and minimum energy paths journal December 2000
Improved tangent estimate in the nudged elastic band method for finding minimum energy paths and saddle points journal December 2000
Transition state geometry prediction using molecular group contributions journal January 2015
Optimization of equilibrium geometries and transition structures journal July 1982
Using redundant internal coordinates to optimize equilibrium geometries and transition states journal January 1996
MSTor: A program for calculating partition functions, free energies, enthalpies, entropies, and heat capacities of complex molecules including torsional anharmonicity journal August 2012
MSTor version 2013: A new version of the computer code for the multi-structural torsional anharmonicity, now with a coupled torsional potential journal August 2013
Multi-structural variational transition state theory. Kinetics of the 1,4-hydrogen shift isomerization of the pentyl radical with torsional anharmonicity journal January 2011
Neural Networks for the Prediction of Organic Chemistry Reactions journal October 2016
Computational Catalysis Using the Artificial Force Induced Reaction Method journal March 2016
Liquid-phase autoxidation of organic compounds at elevated temperatures. 1. The stirred flow reactor technique and analysis of primary products from n-hexadecane autoxidation at 120-180.degree.C journal December 1979
Liquid-phase autoxidation of organic compounds at elevated temperatures. 2. Kinetics and mechanisms of the formation of cleavage products in n-hexadecane autoxidation journal April 1981
Kinetics of elementary reactions in low-temperature autoignition chemistry journal August 2011
Reaction Mechanism Generator: Automatic construction of chemical kinetic mechanisms journal June 2016
Open Babel: An open chemical toolbox journal October 2011
Exploring transition state structures for intramolecular pathways by the artificial force induced reaction method journal November 2013
The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals journal July 2007
Performance of M06, M06-2X, and M06-HF Density Functionals for Conformationally Flexible Anionic Clusters: M06 Functionals Perform Better than B3LYP for a Model System with Dispersion and Ionic Hydrogen-Bonding Interactions journal November 2013
The reaction of Criegee intermediates with acids and enols journal January 2017
Direct Kinetic Measurements of Criegee Intermediate (CH2OO) Formed by Reaction of CH2I with O2 journal January 2012
Direct Measurements of Conformer-Dependent Reactivity of the Criegee Intermediate CH3CHOO journal April 2013
Direct measurement of Criegee intermediate (CH2OO) reactions with acetone, acetaldehyde, and hexafluoroacetone journal January 2012
Kinetics of the Gas-Phase Reactions of Alcohols, Aldehydes, Carboxylic Acids, and Water with the C13 Stabilized Criegee Intermediate Formed from Ozonolysis of 1-Tetradecene journal June 2001
Direct Observation of the Gas-Phase Criegee Intermediate (CH 2 OO) journal September 2008
Hybrid Density Functional Theory Predictions of Low-Temperature Dimethyl Ether Combustion Pathways. II. Chain-Branching Energetics and Possible Role of the Criegee Intermediate journal November 2003
Direct Determination of the Simplest Criegee Intermediate (CH 2 OO) Self Reaction Rate journal June 2014
Direct Kinetic Measurements of Reactions between the Simplest Criegee Intermediate CH 2 OO and Alkenes journal March 2014
Chemically activated formation of organic acids in reactions of the Criegee intermediate with aldehydes and ketones journal January 2013
Enols Are Common Intermediates in Hydrocarbon Oxidation journal June 2005
Near-threshold H/D exchange in CD3CHO photodissociation journal May 2011
Photo-Tautomerization of Acetaldehyde to Vinyl Alcohol: A Potential Route to Tropospheric Acids journal August 2012
Molecular hydrogen in the troposphere: Global distribution and budget journal December 1999
Gas-Phase Experiments Aimed at Probing the Existence of the Elusive Water Oxide Molecule journal October 1996
Nature of the transition structure for oxygen atom transfer from a hydroperoxide. Theoretical comparison between water oxide and ammonia oxide journal July 1991
Ether Oxides:  A New Class of Stable Ylides? A Theoretical Study of Methanol Oxide and Dimethyl Ether Oxide journal February 1998
Theoretical study of the reactions of Criegee intermediates with ozone, alkylhydroperoxides, and carbon monoxide journal January 2015
A theoretical model for the orientation of carbene insertion into saturated hydrocarbons and the origin of the activation barrier journal November 1993
Ab Initio and Direct Dynamics Studies of the Reaction of Singlet Methylene with Acetylene and the Lifetime of the Cyclopropene Complex journal February 2005
Time-dependent master equation simulation of complex elementary reactions in combustion: Application to the reaction of 1CH2 with C2H2 from 300–2000 K journal September 2001
Chemical mechanism for high temperature combustion of engine relevant fuels with emphasis on soot precursors journal March 2009
Pathways and Rate Coefficients for the Decomposition of Vinoxy and Acetyl Radicals journal May 2006
Phototautomerization of Acetaldehyde to Vinyl Alcohol: A Primary Process in UV-Irradiated Acetaldehyde from 295 to 335 nm journal November 2012
Unimolecular decay strongly limits the atmospheric impact of Criegee intermediates journal January 2017
Theoretical studies of atmospheric reaction mechanisms in the troposphere journal January 2012
Tropospheric OH and HO2 radicals: field measurements and model comparisons journal January 2012
Atmospheric Chemistry of Enols: A Theoretical Study of the Vinyl Alcohol + OH + O 2 Reaction Mechanism journal May 2014
Estimating the atmospheric concentration of Criegee intermediates and their possible interference in a FAGE-LIF instrument journal January 2017
Atmospheric Chemistry of Acetylacetone journal September 2008
Conjugate peak refinement: an algorithm for finding reaction paths and accurate transition states in systems with many degrees of freedom journal June 1992
Ridge method for finding saddle points on potential energy surfaces journal April 1993

Cited By (4)

Thermochemistry of the smallest QOOH radical from the roaming fragmentation of energy selected methyl hydroperoxide ions journal January 2018
Automated reaction path searches for spin-forbidden reactions: Automated Reaction Path Searches journal March 2018
Theoretical study of sensitive reactions in phenol decomposition journal January 2020
The Exploration of Chemical Reaction Networks journal April 2020

Figures / Tables (7)


Similar Records

New Pathways for Formation of Acids and Carbonyl Products in Low-Temperature Oxidation: The Korcek Decomposition of γ-Ketohydroperoxides
Journal Article · Wed Jul 31 00:00:00 EDT 2013 · Journal of the American Chemical Society · OSTI ID:1473944

Resonance stabilization effects on ketone autoxidation: Isomer-specific cyclic ether and ketohydroperoxide formation in the low-temperature (400–625 K) oxidation of diethyl ketone
Journal Article · Tue Oct 11 00:00:00 EDT 2016 · Journal of Physical Chemistry. A, Molecules, Spectroscopy, Kinetics, Environment, and General Theory · OSTI ID:1473944

Unimolecular Reactions of 2-Methyloxetanyl and 2-Methyloxetanylperoxy Radicals
Journal Article · Thu Aug 03 00:00:00 EDT 2023 · Journal of Physical Chemistry. A, Molecules, Spectroscopy, Kinetics, Environment, and General Theory · OSTI ID:1473944