skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate

Journal Article · · Standards in Genomic Sciences

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
FWP SCW1039; #701; AC52-07NA27344; AC02-05CH11231; 701
OSTI ID:
1618979
Alternate ID(s):
OSTI ID: 1419443; OSTI ID: 1467807
Report Number(s):
LLNL-JRNL-739283; 67; PII: 279
Journal Information:
Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Vol. 12 Journal Issue: 1; ISSN 1944-3277
Publisher:
Springer Science + Business MediaCopyright Statement
Country of Publication:
United Kingdom
Language:
English
Citation Metrics:
Cited by: 4 works
Citation information provided by
Web of Science

References (28)

GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses journal July 2005
PILER-CR: Fast and accurate identification of CRISPR repeats journal January 2007
CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats journal June 2007
FragGeneScan: predicting genes in short and error-prone reads journal August 2010
Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics journal November 2012
IMG/M: the integrated metagenome data management and comparative analysis system journal November 2011
Revisiting N2 fixation in Guerrero Negro intertidal microbial mats with a functional single-cell approach journal October 2014
Accelerated Profile HMM Searches journal October 2011
Short read fragment assembly of bacterial genomes journal February 2008
Long-Term Manipulations of Intact Microbial Mat Communities in a Greenhouse Collaboratory: Simulating Earth's Present and Past Field Environments journal December 2002
Unexpected Diversity and Complexity of the Guerrero Negro Hypersaline Microbial Mat journal May 2006
The role of microbial mats in the production of reduced gases on the early Earth journal July 2001
The minimum information about a genome sequence (MIGS) specification journal May 2008
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs journal September 1997
MetaGene: prokaryotic gene finding from environmental genome shotgun sequences journal October 2006
Potential N2 fixation by sulfate-reducing bacteria in a marine intertidal microbial mat journal January 2002
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence journal March 1997
The Pfam protein families database journal November 2009
Nitrogen cycling in microbial mat communities: The quantitative importance of N-fixation and other sources of N for primary productivity book January 1994
Prodigal: prokaryotic gene recognition and translation initiation site identification journal March 2010
The COG database: an updated version includes eukaryotes journal January 2003
Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary journal April 2005
Search and clustering orders of magnitude faster than BLAST journal August 2010
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea journal December 2009
Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis journal January 2012
Hydrogen production in photosynthetic microbial mats in the Elkhorn Slough estuary, Monterey Bay journal October 2011
Determination of Nitrogen-Fixing Phylotypes in Lyngbya sp. and Microcoleus chthonoplastes Cyanobacterial Mats from Guerrero Negro, Baja California, Mexico journal April 2004
Identification of Desulfobacterales as primary hydrogenotrophs in a complex microbial mat community journal April 2014